RNA–Protein interactions for RNA: ENST00000593912.5

VRK3-204, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 551 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-204ENST00000593912 C3P01024 1663 aa5.89□□□□□ -1.47
VRK3-204ENST00000593912 IFFO2Q5TF58 517 aa5.89□□□□□ -1.47
VRK3-204ENST00000593912 ZFYVE16Q7Z3T8 1539 aa5.89□□□□□ -1.47
VRK3-204ENST00000593912 ABCA9Q8IUA7 1624 aa5.88□□□□□ -1.47
VRK3-204ENST00000593912 TOM1O60784 492 aa5.88□□□□□ -1.47
VRK3-204ENST00000593912 NEO1Q92859 1461 aa5.88□□□□□ -1.47
VRK3-204ENST00000593912 ARID3CA6NKF2 412 aa5.87□□□□□ -1.47
VRK3-204ENST00000593912 PHLDB1Q86UU1 1377 aa5.87□□□□□ -1.47
VRK3-204ENST00000593912 EFCAB5A4FU69 1503 aa5.86□□□□□ -1.47
VRK3-204ENST00000593912 DENND4BO75064 1496 aaPredicted RBP5.86□□□□□ -1.47
VRK3-204ENST00000593912 ZMYM4Q5VZL5 1548 aa5.85□□□□□ -1.47
VRK3-204ENST00000593912 ABCA8O94911 1581 aa5.84□□□□□ -1.47
VRK3-204ENST00000593912 FHOD3Q2V2M9 1422 aa5.84□□□□□ -1.47
VRK3-204ENST00000593912 SUPT6HQ7KZ85 1726 aaKnown RBP5.84□□□□□ -1.47
VRK3-204ENST00000593912 HECW1Q76N89 1606 aa5.84□□□□□ -1.47
VRK3-204ENST00000593912 SETBP1Q9Y6X0 1596 aa5.84□□□□□ -1.48
VRK3-204ENST00000593912 TRIM52Q96A61 297 aa5.83□□□□□ -1.48
VRK3-204ENST00000593912 IGF1RP08069 1367 aa5.82□□□□□ -1.48
VRK3-204ENST00000593912 UGGT2Q9NYU1 1516 aa5.82□□□□□ -1.48
VRK3-204ENST00000593912 TRAPPC8Q9Y2L5 1435 aa5.82□□□□□ -1.48
VRK3-204ENST00000593912 CPS1P31327 1500 aa5.81□□□□□ -1.48
VRK3-204ENST00000593912 CACNB1Q02641 598 aaPredicted RBP5.81□□□□□ -1.48
VRK3-204ENST00000593912 PPP6R1Q9UPN7 881 aa5.81□□□□□ -1.48
VRK3-204ENST00000593912 PTPRKQ15262 1439 aa5.81□□□□□ -1.48
VRK3-204ENST00000593912 TCOF1Q13428 1488 aaKnown RBP5.8□□□□□ -1.48
VRK3-204ENST00000593912 C9orf84Q5VXU9 1444 aa5.8□□□□□ -1.48
VRK3-204ENST00000593912 ATP10AO60312 1499 aa5.79□□□□□ -1.48
VRK3-204ENST00000593912 SHANK2Q9UPX8 1470 aa5.79□□□□□ -1.48
VRK3-204ENST00000593912 RBM33Q96EV2 1170 aaKnown RBP5.79□□□□□ -1.48
VRK3-204ENST00000593912 LRRC7Q96NW7 1537 aa5.79□□□□□ -1.48
VRK3-204ENST00000593912 ZNF142P52746 1687 aaPredicted RBP5.79□□□□□ -1.48
VRK3-204ENST00000593912 ATP10BO94823 1461 aa5.78□□□□□ -1.48
VRK3-204ENST00000593912 MAGI2Q86UL8 1455 aa5.78□□□□□ -1.48
VRK3-204ENST00000593912 CARMIL1Q5VZK9 1371 aa5.78□□□□□ -1.48
VRK3-204ENST00000593912 MYO3AQ8NEV4 1616 aa5.77□□□□□ -1.48
VRK3-204ENST00000593912 PLA2R1Q13018 1463 aa5.77□□□□□ -1.49
VRK3-204ENST00000593912 RAPGEF2Q9Y4G8 1499 aa5.77□□□□□ -1.49
VRK3-204ENST00000593912 CFAP74Q9C0B2 1584 aa5.77□□□□□ -1.49
VRK3-204ENST00000593912 PKD2Q13563 968 aa5.77□□□□□ -1.49
VRK3-204ENST00000593912 STRCP1A6NGW2 1772 aa5.77□□□□□ -1.49
VRK3-204ENST00000593912 RNF17Q9BXT8 1623 aaKnown RBP5.77□□□□□ -1.49
VRK3-204ENST00000593912 VWDEQ8N2E2 1590 aa5.76□□□□□ -1.49
VRK3-204ENST00000593912 NEURL4Q96JN8 1562 aa5.76□□□□□ -1.49
VRK3-204ENST00000593912 POLR1AO95602 1720 aaPredicted RBP5.76□□□□□ -1.49
VRK3-204ENST00000593912 CEP170BQ9Y4F5 1589 aaPredicted RBP5.76□□□□□ -1.49
VRK3-204ENST00000593912 POTEHQ6S545 545 aa5.74□□□□□ -1.49
VRK3-204ENST00000593912 DIP2CQ9Y2E4 1556 aa5.73□□□□□ -1.49
VRK3-204ENST00000593912 ESF1Q9H501 851 aaKnown RBP5.73□□□□□ -1.49
VRK3-204ENST00000593912 ZRANB1Q9UGI0 708 aa5.73□□□□□ -1.49
VRK3-204ENST00000593912 KIF27Q86VH2 1401 aa5.73□□□□□ -1.49
VRK3-204ENST00000593912 SCAPERQ9BY12 1400 aa5.73□□□□□ -1.49
VRK3-204ENST00000593912 ABCA6Q8N139 1617 aa5.72□□□□□ -1.49
VRK3-204ENST00000593912 RAPGEF6Q8TEU7 1601 aa5.72□□□□□ -1.49
VRK3-204ENST00000593912 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP5.72□□□□□ -1.49
VRK3-204ENST00000593912 NPATQ14207 1427 aa5.72□□□□□ -1.49
VRK3-204ENST00000593912 LRP6O75581 1613 aa5.71□□□□□ -1.5
VRK3-204ENST00000593912 MROH2AA6NES4 1674 aa5.71□□□□□ -1.5
VRK3-204ENST00000593912 XIRP1Q702N8 1843 aaKnown RBP5.71□□□□□ -1.5
VRK3-204ENST00000593912 DNMT1P26358 1616 aaKnown RBP5.7□□□□□ -1.5
VRK3-204ENST00000593912 EP400Q96L91 3159 aa5.7□□□□□ -1.5
VRK3-204ENST00000593912 AGLP35573 1532 aa5.7□□□□□ -1.5
VRK3-204ENST00000593912 ROBO1Q9Y6N7 1651 aa5.7□□□□□ -1.5
VRK3-204ENST00000593912 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP5.7□□□□□ -1.5
VRK3-204ENST00000593912 HNRNPUL2Q1KMD3 747 aaKnown RBP5.7□□□□□ -1.5
VRK3-204ENST00000593912 LRP5O75197 1615 aa5.7□□□□□ -1.5
VRK3-204ENST00000593912 CTTNBP2Q8WZ74 1663 aa5.69□□□□□ -1.5
VRK3-204ENST00000593912 SYNMO15061 1565 aa5.69□□□□□ -1.5
VRK3-204ENST00000593912 RGS12O14924 1447 aa5.69□□□□□ -1.5
VRK3-204ENST00000593912 YY1P25490 414 aa5.69□□□□□ -1.5
VRK3-204ENST00000593912 CLTCQ00610 1675 aaKnown RBP5.69□□□□□ -1.5
VRK3-204ENST00000593912 ZMYM3Q14202 1370 aa5.68□□□□□ -1.5
VRK3-204ENST00000593912 REREQ9P2R6 1566 aa5.68□□□□□ -1.5
VRK3-204ENST00000593912 CNTLNQ9NXG0 1405 aa5.68□□□□□ -1.5
VRK3-204ENST00000593912 SENP3-EIF4A1A0A087X0R7 540 aa5.68□□□□□ -1.5
VRK3-204ENST00000593912 RXRBP28702 533 aa5.68□□□□□ -1.5
VRK3-204ENST00000593912 MYT1LQ9UL68 1186 aa5.68□□□□□ -1.5
VRK3-204ENST00000593912 GOLGA3Q08378 1498 aa5.67□□□□□ -1.5
VRK3-204ENST00000593912 CDK12Q9NYV4 1490 aaPredicted RBP5.67□□□□□ -1.5
VRK3-204ENST00000593912 NUTM2BA6NNL0 878 aaPredicted RBP5.67□□□□□ -1.5
VRK3-204ENST00000593912 NUTM2EB1AL46 878 aaPredicted RBP5.67□□□□□ -1.5
VRK3-204ENST00000593912 NUTM2DQ5VT03 806 aaPredicted RBP5.67□□□□□ -1.5
VRK3-204ENST00000593912 ZNF772Q68DY9 489 aaPredicted RBP5.67□□□□□ -1.5
VRK3-204ENST00000593912 NUTM2AQ8IVF1 878 aaPredicted RBP5.67□□□□□ -1.5
VRK3-204ENST00000593912 P3H3Q8IVL6 736 aa5.67□□□□□ -1.5
VRK3-204ENST00000593912 PHLPP1O60346 1717 aa5.67□□□□□ -1.5
VRK3-204ENST00000593912 CEP350Q5VT06 3117 aa5.67□□□□□ -1.5
VRK3-204ENST00000593912 KDM5CP41229 1560 aa5.67□□□□□ -1.5
VRK3-204ENST00000593912 FAM135BQ49AJ0 1406 aa5.66□□□□□ -1.5
VRK3-204ENST00000593912 A2ML1A8K2U0 1454 aa5.66□□□□□ -1.5
VRK3-204ENST00000593912 CDK13Q14004 1512 aaKnown RBP5.66□□□□□ -1.5
VRK3-204ENST00000593912 MEX3CQ5U5Q3 659 aaKnown RBP5.66□□□□□ -1.5
VRK3-204ENST00000593912 AFAP1Q8N556 730 aa5.66□□□□□ -1.5
VRK3-204ENST00000593912 IQGAP1P46940 1657 aa5.66□□□□□ -1.5
VRK3-204ENST00000593912 ITSN2Q9NZM3 1697 aa5.66□□□□□ -1.5
VRK3-204ENST00000593912 PLCH2O75038 1416 aa5.65□□□□□ -1.5
VRK3-204ENST00000593912 NPHP4O75161 1426 aaPredicted RBP5.65□□□□□ -1.51
VRK3-204ENST00000593912 NUP153P49790 1475 aaKnown RBP5.64□□□□□ -1.51
VRK3-204ENST00000593912 ZNF518AQ6AHZ1 1483 aa5.64□□□□□ -1.51
VRK3-204ENST00000593912 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP5.64□□□□□ -1.51
VRK3-204ENST00000593912 JCADQ9P266 1359 aa5.64□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms