RNA–Protein interactions for RNA: ENST00000591126.5

SMAD4-212, Transcript of SMAD family member 4, humanhuman

TSL 1 (best)

Gene SMAD4, Length 4,970 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-212ENST00000591126 CLSPNQ9HAW4 1339 aa8.43□□□□□ -1.06
SMAD4-212ENST00000591126 MYOM3Q5VTT5 1437 aa8.42□□□□□ -1.06
SMAD4-212ENST00000591126 WASHC2AQ641Q2 1341 aa8.42□□□□□ -1.06
SMAD4-212ENST00000591126 WDR43Q15061 677 aaKnown RBP eCLIP8.42□□□□□ -1.06
SMAD4-212ENST00000591126 GRIN2AQ12879 1464 aa8.42□□□□□ -1.06
SMAD4-212ENST00000591126 ANKLE2Q86XL3 938 aa8.42□□□□□ -1.06
SMAD4-212ENST00000591126 TMC1Q8TDI8 760 aa8.42□□□□□ -1.06
SMAD4-212ENST00000591126 NPHP1O15259 732 aa8.42□□□□□ -1.06
SMAD4-212ENST00000591126 ANO8Q9HCE9 1232 aaPredicted RBP8.41□□□□□ -1.06
SMAD4-212ENST00000591126 TOP2BQ02880 1626 aa8.41□□□□□ -1.06
SMAD4-212ENST00000591126 SF3B2Q13435 895 aaKnown RBP8.41□□□□□ -1.06
SMAD4-212ENST00000591126 FHOD3Q2V2M9 1422 aa8.4□□□□□ -1.06
SMAD4-212ENST00000591126 EIF5BO60841 1220 aaKnown RBP8.4□□□□□ -1.06
SMAD4-212ENST00000591126 TMF1P82094 1093 aa8.4□□□□□ -1.06
SMAD4-212ENST00000591126 CCDC9Q9Y3X0 531 aaKnown RBP8.4□□□□□ -1.06
SMAD4-212ENST00000591126 CD109Q6YHK3 1445 aa8.4□□□□□ -1.06
SMAD4-212ENST00000591126 KNSTRNQ9Y448 316 aa8.4□□□□□ -1.07
SMAD4-212ENST00000591126 NUP155O75694 1391 aa8.4□□□□□ -1.07
SMAD4-212ENST00000591126 PSME1Q06323 249 aa8.4□□□□□ -1.07
SMAD4-212ENST00000591126 RGL3Q3MIN7 710 aa8.4□□□□□ -1.07
SMAD4-212ENST00000591126 CHMP4BQ9H444 224 aaKnown RBP8.39□□□□□ -1.07
SMAD4-212ENST00000591126 TERF2IPQ9NYB0 399 aa8.39□□□□□ -1.07
SMAD4-212ENST00000591126 HNRNPMP52272 730 aaKnown RBP eCLIP8.39□□□□□ -1.07
SMAD4-212ENST00000591126 GOLGA6L2Q8N9W4 650 aaPredicted RBP8.38□□□□□ -1.07
SMAD4-212ENST00000591126 SLC52A1Q9NWF4 448 aa8.38□□□□□ -1.07
SMAD4-212ENST00000591126 ARHGAP5Q13017 1502 aa8.38□□□□□ -1.07
SMAD4-212ENST00000591126 CSB-PGBD3P0DP91 1061 aa8.38□□□□□ -1.07
SMAD4-212ENST00000591126 WDR62O43379 1518 aa8.38□□□□□ -1.07
SMAD4-212ENST00000591126 SRPK2P78362 688 aaKnown RBP8.38□□□□□ -1.07
SMAD4-212ENST00000591126 UNC13AQ9UPW8 1703 aa8.37□□□□□ -1.07
SMAD4-212ENST00000591126 ERICH6Q7L0X2 663 aa8.37□□□□□ -1.07
SMAD4-212ENST00000591126 CARD11Q9BXL7 1154 aa8.37□□□□□ -1.07
SMAD4-212ENST00000591126 DNAJC5Q9H3Z4 198 aa8.37□□□□□ -1.07
SMAD4-212ENST00000591126 KIF21BO75037 1637 aa8.36□□□□□ -1.07
SMAD4-212ENST00000591126 NGDNQ8NEJ9 315 aaKnown RBP8.36□□□□□ -1.07
SMAD4-212ENST00000591126 CASKIN1Q8WXD9 1431 aa8.36□□□□□ -1.07
SMAD4-212ENST00000591126 IQGAP2Q13576 1575 aa8.35□□□□□ -1.07
SMAD4-212ENST00000591126 HDAC5Q9UQL6 1122 aa8.35□□□□□ -1.07
SMAD4-212ENST00000591126 HECW1Q76N89 1606 aa8.35□□□□□ -1.07
SMAD4-212ENST00000591126 DENND4BO75064 1496 aaPredicted RBP8.35□□□□□ -1.07
SMAD4-212ENST00000591126 CALD1Q05682 793 aaKnown RBP8.34□□□□□ -1.07
SMAD4-212ENST00000591126 CNGB1Q14028 1251 aaPredicted RBP8.34□□□□□ -1.07
SMAD4-212ENST00000591126 HRCP23327 699 aa8.34□□□□□ -1.07
SMAD4-212ENST00000591126 TROQ12816 1431 aaPredicted RBP8.34□□□□□ -1.07
SMAD4-212ENST00000591126 URB2Q14146 1524 aaKnown RBP8.34□□□□□ -1.07
SMAD4-212ENST00000591126 FYCO1Q9BQS8 1478 aa8.34□□□□□ -1.07
SMAD4-212ENST00000591126 MAPK8IP3Q9UPT6 1336 aa8.34□□□□□ -1.07
SMAD4-212ENST00000591126 PRDM2Q13029 1718 aa8.33□□□□□ -1.08
SMAD4-212ENST00000591126 EVA1CP58658 441 aa8.33□□□□□ -1.08
SMAD4-212ENST00000591126 PKD2Q13563 968 aa8.33□□□□□ -1.08
SMAD4-212ENST00000591126 MYH16Q9H6N6 1097 aa8.32□□□□□ -1.08
SMAD4-212ENST00000591126 RPGRIP1LQ68CZ1 1315 aa8.32□□□□□ -1.08
SMAD4-212ENST00000591126 TOM1O60784 492 aa8.32□□□□□ -1.08
SMAD4-212ENST00000591126 PAK3O75914 559 aaPredicted RBP8.32□□□□□ -1.08
SMAD4-212ENST00000591126 PROSER2Q86WR7 435 aaPredicted RBP8.32□□□□□ -1.08
SMAD4-212ENST00000591126 DHX57Q6P158 1386 aaKnown RBP8.31□□□□□ -1.08
SMAD4-212ENST00000591126 CCDC144AA2RUR9 1427 aa8.31□□□□□ -1.08
SMAD4-212ENST00000591126 SCAPERQ9BY12 1400 aa8.31□□□□□ -1.08
SMAD4-212ENST00000591126 ZNF316A6NFI3 1004 aaPredicted RBP8.3□□□□□ -1.08
SMAD4-212ENST00000591126 MIA2Q96PC5 1412 aa8.3□□□□□ -1.08
SMAD4-212ENST00000591126 CNTLNQ9NXG0 1405 aa8.3□□□□□ -1.08
SMAD4-212ENST00000591126 MS4A1P11836 297 aa8.3□□□□□ -1.08
SMAD4-212ENST00000591126 GPRASP1Q5JY77 1395 aa8.3□□□□□ -1.08
SMAD4-212ENST00000591126 DCAF11Q8TEB1 546 aa8.3□□□□□ -1.08
SMAD4-212ENST00000591126 TXNDC2Q86VQ3 553 aa8.29□□□□□ -1.08
SMAD4-212ENST00000591126 RTF1Q92541 710 aaKnown RBP8.29□□□□□ -1.08
SMAD4-212ENST00000591126 FANCAO15360 1455 aa8.29□□□□□ -1.08
SMAD4-212ENST00000591126 LRPPRCP42704 1394 aaKnown RBP8.29□□□□□ -1.08
SMAD4-212ENST00000591126 EHBP1L1Q8N3D4 1523 aa8.28□□□□□ -1.08
SMAD4-212ENST00000591126 NCOA2Q15596 1464 aa8.27□□□□□ -1.08
SMAD4-212ENST00000591126 EVC2Q86UK5 1308 aa8.27□□□□□ -1.08
SMAD4-212ENST00000591126 KIF15Q9NS87 1388 aa8.27□□□□□ -1.09
SMAD4-212ENST00000591126 STK26Q9P289 416 aa8.26□□□□□ -1.09
SMAD4-212ENST00000591126 RRBP1Q9P2E9 1410 aaKnown RBP8.26□□□□□ -1.09
SMAD4-212ENST00000591126 LMOD3Q0VAK6 560 aa8.26□□□□□ -1.09
SMAD4-212ENST00000591126 ARXQ96QS3 562 aa8.25□□□□□ -1.09
SMAD4-212ENST00000591126 ADGRL1O94910 1474 aa8.25□□□□□ -1.09
SMAD4-212ENST00000591126 MPHOSPH9Q99550 1183 aa8.25□□□□□ -1.09
SMAD4-212ENST00000591126 HFM1A2PYH4 1435 aa8.25□□□□□ -1.09
SMAD4-212ENST00000591126 EPRSP07814 1512 aaKnown RBP8.24□□□□□ -1.09
SMAD4-212ENST00000591126 RTN4Q9NQC3 1192 aaKnown RBP8.24□□□□□ -1.09
SMAD4-212ENST00000591126 PLEKHG5O94827 1062 aa8.23□□□□□ -1.09
SMAD4-212ENST00000591126 HSP90B1P14625 803 aaKnown RBP8.23□□□□□ -1.09
SMAD4-212ENST00000591126 PRXQ9BXM0 1461 aa8.23□□□□□ -1.09
SMAD4-212ENST00000591126 KIF14Q15058 1648 aa8.23□□□□□ -1.09
SMAD4-212ENST00000591126 PPM1GO15355 546 aaPredicted RBP8.23□□□□□ -1.09
SMAD4-212ENST00000591126 AMPHP49418 695 aa8.23□□□□□ -1.09
SMAD4-212ENST00000591126 MORC1Q86VD1 984 aa8.23□□□□□ -1.09
SMAD4-212ENST00000591126 GOLGA2Q08379 1002 aa8.22□□□□□ -1.09
SMAD4-212ENST00000591126 WDR7Q9Y4E6 1490 aa8.22□□□□□ -1.09
SMAD4-212ENST00000591126 ROCK1Q13464 1354 aa8.22□□□□□ -1.09
SMAD4-212ENST00000591126 ROCK2O75116 1388 aaKnown RBP8.22□□□□□ -1.09
SMAD4-212ENST00000591126 ASXL2Q76L83 1435 aa8.22□□□□□ -1.09
SMAD4-212ENST00000591126 WWC1Q8IX03 1113 aa8.21□□□□□ -1.09
SMAD4-212ENST00000591126 ZNF608Q9ULD9 1512 aaPredicted RBP8.21□□□□□ -1.1
SMAD4-212ENST00000591126 COG3Q96JB2 828 aa8.2□□□□□ -1.1
SMAD4-212ENST00000591126 DAPK1P53355 1430 aa8.2□□□□□ -1.1
SMAD4-212ENST00000591126 ANKRD50Q9ULJ7 1429 aa8.2□□□□□ -1.1
SMAD4-212ENST00000591126 C11orf95C9JLR9 678 aaPredicted RBP8.2□□□□□ -1.1
SMAD4-212ENST00000591126 BIVM-ERCC5R4GMW8 1640 aa8.2□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms