RNA–Protein interactions for RNA: ENST00000584063.5

CDK5RAP3-231, Transcript of CDK5 regulatory subunit associated protein 3, humanhuman

TSL 1 (best)

Gene CDK5RAP3, Length 2,759 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3-231ENST00000584063 TAF7LQ5H9L4 462 aa16.37■□□□□ 0.21
CDK5RAP3-231ENST00000584063 CDK13Q14004 1512 aaKnown RBP16.36■□□□□ 0.21
CDK5RAP3-231ENST00000584063 NUP160Q12769 1436 aa16.35■□□□□ 0.21
CDK5RAP3-231ENST00000584063 FGD1P98174 961 aa16.34■□□□□ 0.21
CDK5RAP3-231ENST00000584063 PTPRKQ15262 1439 aa16.34■□□□□ 0.21
CDK5RAP3-231ENST00000584063 CARMIL2Q6F5E8 1435 aa16.34■□□□□ 0.21
CDK5RAP3-231ENST00000584063 LRRIQ1Q96JM4 1722 aa16.33■□□□□ 0.2
CDK5RAP3-231ENST00000584063 UGGT2Q9NYU1 1516 aa16.33■□□□□ 0.2
CDK5RAP3-231ENST00000584063 ZNF777Q9ULD5 760 aaPredicted RBP16.33■□□□□ 0.2
CDK5RAP3-231ENST00000584063 PLB1Q6P1J6 1458 aa16.33■□□□□ 0.2
CDK5RAP3-231ENST00000584063 KIAA0556O60303 1618 aa16.32■□□□□ 0.2
CDK5RAP3-231ENST00000584063 TRIM52Q96A61 297 aa16.32■□□□□ 0.2
CDK5RAP3-231ENST00000584063 CDK11AQ9UQ88 783 aaPredicted RBP16.32■□□□□ 0.2
CDK5RAP3-231ENST00000584063 EPRSP07814 1512 aaKnown RBP16.31■□□□□ 0.2
CDK5RAP3-231ENST00000584063 PRG4Q92954 1404 aaPredicted RBP16.3■□□□□ 0.2
CDK5RAP3-231ENST00000584063 TSHZ2Q9NRE2 1034 aa16.3■□□□□ 0.2
CDK5RAP3-231ENST00000584063 NCOA2Q15596 1464 aa16.3■□□□□ 0.2
CDK5RAP3-231ENST00000584063 CCDC136Q96JN2 1154 aa16.3■□□□□ 0.2
CDK5RAP3-231ENST00000584063 FKBP8Q14318 412 aa16.29■□□□□ 0.2
CDK5RAP3-231ENST00000584063 FGD6Q6ZV73 1430 aa16.29■□□□□ 0.2
CDK5RAP3-231ENST00000584063 RRP7BPQ9NSQ0 103 aa16.28■□□□□ 0.2
CDK5RAP3-231ENST00000584063 ERCC6L2Q5T890 1561 aa16.26■□□□□ 0.19
CDK5RAP3-231ENST00000584063 ZNF644Q9H582 1327 aaPredicted RBP16.26■□□□□ 0.19
CDK5RAP3-231ENST00000584063 MAGI3Q5TCQ9 1506 aa16.26■□□□□ 0.19
CDK5RAP3-231ENST00000584063 PLEKHD1A6NEE1 506 aa16.25■□□□□ 0.19
CDK5RAP3-231ENST00000584063 PTPRGP23470 1445 aa16.24■□□□□ 0.19
CDK5RAP3-231ENST00000584063 BRD2P25440 801 aaKnown RBP16.24■□□□□ 0.19
CDK5RAP3-231ENST00000584063 HECW1Q76N89 1606 aa16.24■□□□□ 0.19
CDK5RAP3-231ENST00000584063 NUP153P49790 1475 aaKnown RBP16.24■□□□□ 0.19
CDK5RAP3-231ENST00000584063 CCDC18Q5T9S5 1454 aa16.24■□□□□ 0.19
CDK5RAP3-231ENST00000584063 MYOM3Q5VTT5 1437 aa16.23■□□□□ 0.19
CDK5RAP3-231ENST00000584063 A0A0U1RQG5 324 aaPredicted RBP16.22■□□□□ 0.19
CDK5RAP3-231ENST00000584063 TMEM132AQ24JP5 1023 aa16.22■□□□□ 0.19
CDK5RAP3-231ENST00000584063 FBXO3Q9UK99 471 aa16.22■□□□□ 0.19
CDK5RAP3-231ENST00000584063 PPP1R15AO75807 674 aaPredicted RBP16.21■□□□□ 0.19
CDK5RAP3-231ENST00000584063 CFDP1Q9UEE9 299 aaPredicted RBP16.21■□□□□ 0.18
CDK5RAP3-231ENST00000584063 SALL2Q9Y467 1007 aaPredicted RBP16.2■□□□□ 0.18
CDK5RAP3-231ENST00000584063 EHBP1L1Q8N3D4 1523 aa16.18■□□□□ 0.18
CDK5RAP3-231ENST00000584063 RAPGEF6Q8TEU7 1601 aa16.18■□□□□ 0.18
CDK5RAP3-231ENST00000584063 FOXD1Q16676 465 aa16.17■□□□□ 0.18
CDK5RAP3-231ENST00000584063 SUPT6HQ7KZ85 1726 aaKnown RBP16.16■□□□□ 0.18
CDK5RAP3-231ENST00000584063 IRX6P78412 446 aaPredicted RBP16.15■□□□□ 0.18
CDK5RAP3-231ENST00000584063 NAIPQ13075 1403 aa16.15■□□□□ 0.18
CDK5RAP3-231ENST00000584063 TONSLQ96HA7 1378 aa16.14■□□□□ 0.17
CDK5RAP3-231ENST00000584063 PLCB2Q00722 1185 aa16.14■□□□□ 0.17
CDK5RAP3-231ENST00000584063 PTPN23Q9H3S7 1636 aa16.13■□□□□ 0.17
CDK5RAP3-231ENST00000584063 HFM1A2PYH4 1435 aa16.12■□□□□ 0.17
CDK5RAP3-231ENST00000584063 OSCARQ8IYS5 282 aa16.11■□□□□ 0.17
CDK5RAP3-231ENST00000584063 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.11■□□□□ 0.17
CDK5RAP3-231ENST00000584063 CNGB1Q14028 1251 aaPredicted RBP16.1■□□□□ 0.17
CDK5RAP3-231ENST00000584063 ATP10BO94823 1461 aa16.09■□□□□ 0.17
CDK5RAP3-231ENST00000584063 KDM6BO15054 1643 aa16.09■□□□□ 0.17
CDK5RAP3-231ENST00000584063 TROQ12816 1431 aaPredicted RBP16.09■□□□□ 0.17
CDK5RAP3-231ENST00000584063 PAXIP1Q6ZW49 1069 aaPredicted RBP16.09■□□□□ 0.17
CDK5RAP3-231ENST00000584063 UACAQ9BZF9 1416 aa16.09■□□□□ 0.17
CDK5RAP3-231ENST00000584063 ANP32CO43423 234 aa16.09■□□□□ 0.17
CDK5RAP3-231ENST00000584063 PPP6R1Q9UPN7 881 aa16.09■□□□□ 0.17
CDK5RAP3-231ENST00000584063 CLASP1Q7Z460 1538 aa16.08■□□□□ 0.16
CDK5RAP3-231ENST00000584063 CNKSR2Q8WXI2 1034 aa16.07■□□□□ 0.16
CDK5RAP3-231ENST00000584063 CDK11BP21127 795 aaKnown RBP16.06■□□□□ 0.16
CDK5RAP3-231ENST00000584063 HNRNPMP52272 730 aaKnown RBP eCLIP16.05■□□□□ 0.164e-8■■□□□ 12.7
CDK5RAP3-231ENST00000584063 SHROOM2Q13796 1616 aa16.05■□□□□ 0.16
CDK5RAP3-231ENST00000584063 DENND4BO75064 1496 aaPredicted RBP16.05■□□□□ 0.16
CDK5RAP3-231ENST00000584063 ABCA8O94911 1581 aa16.05■□□□□ 0.16
CDK5RAP3-231ENST00000584063 KIF14Q15058 1648 aa16.03■□□□□ 0.16
CDK5RAP3-231ENST00000584063 ARHGEF11O15085 1522 aa16.02■□□□□ 0.16
CDK5RAP3-231ENST00000584063 SENP3-EIF4A1A0A087X0R7 540 aa16.02■□□□□ 0.15
CDK5RAP3-231ENST00000584063 KDM5BQ9UGL1 1544 aa16.01■□□□□ 0.15
CDK5RAP3-231ENST00000584063 MIA2Q96PC5 1412 aa16.01■□□□□ 0.15
CDK5RAP3-231ENST00000584063 HNRNPUQ00839 825 aaKnown RBP eCLIP15.99■□□□□ 0.15
CDK5RAP3-231ENST00000584063 AAMPQ13685 434 aa15.99■□□□□ 0.15
CDK5RAP3-231ENST00000584063 GPATCH8Q9UKJ3 1502 aaKnown RBP15.99■□□□□ 0.15
CDK5RAP3-231ENST00000584063 TSPY4P0CV99 314 aa15.99■□□□□ 0.15
CDK5RAP3-231ENST00000584063 TSPY10P0CW01 314 aa15.99■□□□□ 0.15
CDK5RAP3-231ENST00000584063 IGSF3O75054 1194 aa15.98■□□□□ 0.15
CDK5RAP3-231ENST00000584063 HSPA5P11021 654 aaKnown RBP15.98■□□□□ 0.15
CDK5RAP3-231ENST00000584063 CFAP44Q96MT7 982 aa15.98■□□□□ 0.15
CDK5RAP3-231ENST00000584063 MPHOSPH9Q99550 1183 aa15.98■□□□□ 0.15
CDK5RAP3-231ENST00000584063 RBM19Q9Y4C8 960 aaKnown RBP15.98■□□□□ 0.15
CDK5RAP3-231ENST00000584063 ABCC5O15440 1437 aa15.96■□□□□ 0.15
CDK5RAP3-231ENST00000584063 DAPK1P53355 1430 aa15.96■□□□□ 0.15
CDK5RAP3-231ENST00000584063 L3MBTL2Q969R5 705 aa15.96■□□□□ 0.15
CDK5RAP3-231ENST00000584063 SLC4A1APQ9BWU0 796 aaKnown RBP15.95■□□□□ 0.14
CDK5RAP3-231ENST00000584063 C11orf95C9JLR9 678 aaPredicted RBP15.94■□□□□ 0.14
CDK5RAP3-231ENST00000584063 WASHC2AQ641Q2 1341 aa15.94■□□□□ 0.14
CDK5RAP3-231ENST00000584063 CAMSAP2Q08AD1 1489 aa15.94■□□□□ 0.14
CDK5RAP3-231ENST00000584063 TCOF1Q13428 1488 aaKnown RBP15.94■□□□□ 0.14
CDK5RAP3-231ENST00000584063 MYT1LQ9UL68 1186 aa15.93■□□□□ 0.14
CDK5RAP3-231ENST00000584063 CCDC184Q52MB2 194 aa15.92■□□□□ 0.14
CDK5RAP3-231ENST00000584063 ABCC2Q92887 1545 aa15.91■□□□□ 0.14
CDK5RAP3-231ENST00000584063 NPM1P06748 294 aaKnown RBP eCLIP15.91■□□□□ 0.14
CDK5RAP3-231ENST00000584063 NBPF8Q3BBV2 869 aa15.91■□□□□ 0.14
CDK5RAP3-231ENST00000584063 CYB5RLQ6IPT4 315 aa15.91■□□□□ 0.14
CDK5RAP3-231ENST00000584063 DHX30Q7L2E3 1194 aaKnown RBP eCLIP15.9■□□□□ 0.14
CDK5RAP3-231ENST00000584063 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.89■□□□□ 0.132e-7■■□□□ 13.2
CDK5RAP3-231ENST00000584063 FAM9BQ8IZU0 186 aa15.88■□□□□ 0.13
CDK5RAP3-231ENST00000584063 CCER2I3L3R5 266 aa15.87■□□□□ 0.13
CDK5RAP3-231ENST00000584063 ZCCHC11Q5TAX3 1644 aaKnown RBP15.87■□□□□ 0.13
CDK5RAP3-231ENST00000584063 POLR3GLQ9BT43 218 aa15.87■□□□□ 0.13
CDK5RAP3-231ENST00000584063 GCC2Q8IWJ2 1684 aa15.86■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms