RNA–Protein interactions for RNA: ENST00000572369.5

SMG6-211, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 3

Gene SMG6, Length 689 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-211ENST00000572369 KCNH8Q96L42 1107 aa12.53□□□□□ -0.4
SMG6-211ENST00000572369 PHLDB1Q86UU1 1377 aa12.53□□□□□ -0.4
SMG6-211ENST00000572369 FER1L4A9Z1Z3 1794 aa12.53□□□□□ -0.4
SMG6-211ENST00000572369 CLIP1P30622 1438 aa12.52□□□□□ -0.41
SMG6-211ENST00000572369 ATP10BO94823 1461 aa12.52□□□□□ -0.41
SMG6-211ENST00000572369 FANCAO15360 1455 aa12.51□□□□□ -0.41
SMG6-211ENST00000572369 NUP153P49790 1475 aaKnown RBP12.51□□□□□ -0.41
SMG6-211ENST00000572369 HECW1Q76N89 1606 aa12.51□□□□□ -0.41
SMG6-211ENST00000572369 UHRF1BP1Q6BDS2 1440 aa12.5□□□□□ -0.41
SMG6-211ENST00000572369 LOC105371045A0A1W2PR82 267 aa12.49□□□□□ -0.41
SMG6-211ENST00000572369 SRCAPQ6ZRS2 3230 aa12.47□□□□□ -0.41
SMG6-211ENST00000572369 SIGLEC1Q9BZZ2 1709 aa12.46□□□□□ -0.41
SMG6-211ENST00000572369 PLEKHD1A6NEE1 506 aa12.46□□□□□ -0.41
SMG6-211ENST00000572369 SCAF1Q9H7N4 1312 aaKnown RBP12.45□□□□□ -0.42
SMG6-211ENST00000572369 CDK13Q14004 1512 aaKnown RBP12.45□□□□□ -0.42
SMG6-211ENST00000572369 CEP162Q5TB80 1403 aa12.45□□□□□ -0.42
SMG6-211ENST00000572369 NEO1Q92859 1461 aa12.44□□□□□ -0.42
SMG6-211ENST00000572369 LRRIQ1Q96JM4 1722 aa12.42□□□□□ -0.42
SMG6-211ENST00000572369 MLECQ14165 292 aa12.42□□□□□ -0.42
SMG6-211ENST00000572369 CDK11AQ9UQ88 783 aaPredicted RBP12.42□□□□□ -0.42
SMG6-211ENST00000572369 AKNAQ7Z591 1439 aa12.42□□□□□ -0.42
SMG6-211ENST00000572369 ZNF335Q9H4Z2 1342 aaPredicted RBP12.41□□□□□ -0.42
SMG6-211ENST00000572369 PIP4K2BP78356 416 aa12.41□□□□□ -0.42
SMG6-211ENST00000572369 NCOA1Q15788 1441 aa12.41□□□□□ -0.42
SMG6-211ENST00000572369 CASKIN1Q8WXD9 1431 aa12.41□□□□□ -0.42
SMG6-211ENST00000572369 RGS17Q9UGC6 210 aaPredicted RBP12.41□□□□□ -0.42
SMG6-211ENST00000572369 ABCA9Q8IUA7 1624 aa12.4□□□□□ -0.42
SMG6-211ENST00000572369 CEBPAP49715 358 aaPredicted RBP12.4□□□□□ -0.42
SMG6-211ENST00000572369 ARHGEF12Q9NZN5 1544 aa12.4□□□□□ -0.42
SMG6-211ENST00000572369 CCDC18Q5T9S5 1454 aa12.4□□□□□ -0.43
SMG6-211ENST00000572369 FYCO1Q9BQS8 1478 aa12.4□□□□□ -0.43
SMG6-211ENST00000572369 RICTORQ6R327 1708 aa12.37□□□□□ -0.43
SMG6-211ENST00000572369 KIF14Q15058 1648 aa12.36□□□□□ -0.43
SMG6-211ENST00000572369 ZFYVE16Q7Z3T8 1539 aa12.36□□□□□ -0.43
SMG6-211ENST00000572369 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.35□□□□□ -0.43
SMG6-211ENST00000572369 SETD1AO15047 1707 aaKnown RBP12.34□□□□□ -0.43
SMG6-211ENST00000572369 ZMYM4Q5VZL5 1548 aa12.34□□□□□ -0.43
SMG6-211ENST00000572369 TROQ12816 1431 aaPredicted RBP12.34□□□□□ -0.43
SMG6-211ENST00000572369 SETD1BQ9UPS6 1966 aaKnown RBP12.34□□□□□ -0.43
SMG6-211ENST00000572369 DENND4BO75064 1496 aaPredicted RBP12.34□□□□□ -0.43
SMG6-211ENST00000572369 TOM1O60784 492 aa12.33□□□□□ -0.44
SMG6-211ENST00000572369 MYO5CQ9NQX4 1742 aa12.33□□□□□ -0.44
SMG6-211ENST00000572369 CFAP74Q9C0B2 1584 aa12.32□□□□□ -0.44
SMG6-211ENST00000572369 CAMSAP1Q5T5Y3 1602 aa12.29□□□□□ -0.44
SMG6-211ENST00000572369 VPS8Q8N3P4 1428 aa12.29□□□□□ -0.44
SMG6-211ENST00000572369 POTEAQ6S8J7 498 aa12.29□□□□□ -0.44
SMG6-211ENST00000572369 MTUS2Q5JR59 1369 aa12.29□□□□□ -0.44
SMG6-211ENST00000572369 MAGI2Q86UL8 1455 aa12.28□□□□□ -0.44
SMG6-211ENST00000572369 PLCH2O75038 1416 aa12.27□□□□□ -0.45
SMG6-211ENST00000572369 ARHGAP5Q13017 1502 aa12.27□□□□□ -0.45
SMG6-211ENST00000572369 APLP2Q06481 763 aa12.26□□□□□ -0.45
SMG6-211ENST00000572369 C3P01024 1663 aa12.26□□□□□ -0.45
SMG6-211ENST00000572369 EFCAB2Q5VUJ9 269 aa12.25□□□□□ -0.45
SMG6-211ENST00000572369 CDC42BPBQ9Y5S2 1711 aa12.25□□□□□ -0.45
SMG6-211ENST00000572369 TIAM1Q13009 1591 aa12.24□□□□□ -0.45
SMG6-211ENST00000572369 CDC42BPAQ5VT25 1732 aa12.24□□□□□ -0.45
SMG6-211ENST00000572369 PREX2Q70Z35 1606 aa12.24□□□□□ -0.45
SMG6-211ENST00000572369 EHBP1L1Q8N3D4 1523 aa12.24□□□□□ -0.45
SMG6-211ENST00000572369 NCKAP5LQ9HCH0 1330 aa12.24□□□□□ -0.45
SMG6-211ENST00000572369 ALKQ9UM73 1620 aa12.23□□□□□ -0.45
SMG6-211ENST00000572369 TRAPPC8Q9Y2L5 1435 aa12.23□□□□□ -0.45
SMG6-211ENST00000572369 UPF1Q92900 1129 aaKnown RBP eCLIP12.23□□□□□ -0.45
SMG6-211ENST00000572369 SUPT6HQ7KZ85 1726 aaKnown RBP12.22□□□□□ -0.45
SMG6-211ENST00000572369 CPS1P31327 1500 aa12.21□□□□□ -0.45
SMG6-211ENST00000572369 PTPRKQ15262 1439 aa12.21□□□□□ -0.45
SMG6-211ENST00000572369 C9orf84Q5VXU9 1444 aa12.21□□□□□ -0.45
SMG6-211ENST00000572369 CCNB3Q8WWL7 1395 aa12.21□□□□□ -0.45
SMG6-211ENST00000572369 SENP3Q9H4L4 574 aaPredicted RBP12.21□□□□□ -0.45
SMG6-211ENST00000572369 ZNF777Q9ULD5 760 aaPredicted RBP12.21□□□□□ -0.45
SMG6-211ENST00000572369 ATP10AO60312 1499 aa12.21□□□□□ -0.46
SMG6-211ENST00000572369 SCAPERQ9BY12 1400 aa12.2□□□□□ -0.46
SMG6-211ENST00000572369 ITSN2Q9NZM3 1697 aa12.2□□□□□ -0.46
SMG6-211ENST00000572369 MYT1LQ9UL68 1186 aa12.19□□□□□ -0.46
SMG6-211ENST00000572369 PKD2Q13563 968 aa12.18□□□□□ -0.46
SMG6-211ENST00000572369 PLA2R1Q13018 1463 aa12.18□□□□□ -0.46
SMG6-211ENST00000572369 TCOF1Q13428 1488 aaKnown RBP12.17□□□□□ -0.46
SMG6-211ENST00000572369 CFDP1Q9UEE9 299 aaPredicted RBP12.17□□□□□ -0.46
SMG6-211ENST00000572369 PPP6R1Q9UPN7 881 aa12.17□□□□□ -0.46
SMG6-211ENST00000572369 MAP3K1Q13233 1512 aa12.16□□□□□ -0.46
SMG6-211ENST00000572369 GPATCH8Q9UKJ3 1502 aaKnown RBP12.16□□□□□ -0.46
SMG6-211ENST00000572369 LRRC9Q6ZRR7 1453 aa12.16□□□□□ -0.46
SMG6-211ENST00000572369 NCOA2Q15596 1464 aa12.15□□□□□ -0.46
SMG6-211ENST00000572369 ZNF518AQ6AHZ1 1483 aa12.14□□□□□ -0.47
SMG6-211ENST00000572369 ABCC1P33527 1531 aa12.14□□□□□ -0.47
SMG6-211ENST00000572369 SAMD9LQ8IVG5 1584 aa12.13□□□□□ -0.47
SMG6-211ENST00000572369 KANK4Q5T7N3 995 aaPredicted RBP12.13□□□□□ -0.47
SMG6-211ENST00000572369 AFAP1Q8N556 730 aa12.12□□□□□ -0.47
SMG6-211ENST00000572369 PLEKHH2Q8IVE3 1493 aa12.12□□□□□ -0.47
SMG6-211ENST00000572369 SHANK2Q9UPX8 1470 aa12.12□□□□□ -0.47
SMG6-211ENST00000572369 SYCP2Q9BX26 1530 aa12.11□□□□□ -0.47
SMG6-211ENST00000572369 HNRNPMP52272 730 aaKnown RBP eCLIP12.11□□□□□ -0.47
SMG6-211ENST00000572369 ZNF142P52746 1687 aaPredicted RBP12.1□□□□□ -0.47
SMG6-211ENST00000572369 IFFO2Q5TF58 517 aa12.1□□□□□ -0.47
SMG6-211ENST00000572369 NPATQ14207 1427 aa12.1□□□□□ -0.47
SMG6-211ENST00000572369 KDM5CP41229 1560 aa12.09□□□□□ -0.47
SMG6-211ENST00000572369 ESF1Q9H501 851 aaKnown RBP12.08□□□□□ -0.48
SMG6-211ENST00000572369 ZNF644Q9H582 1327 aaPredicted RBP12.08□□□□□ -0.48
SMG6-211ENST00000572369 KIAA1107Q9UPP5 1409 aa12.07□□□□□ -0.48
SMG6-211ENST00000572369 MYO3AQ8NEV4 1616 aa12.07□□□□□ -0.48
SMG6-211ENST00000572369 CAMSAP2Q08AD1 1489 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms