RNA–Protein interactions for RNA: ENST00000572369.5

SMG6-211, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 3

Gene SMG6, Length 689 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-211ENST00000572369 NISCHQ9Y2I1 1504 aa18.7■□□□□ 0.58
SMG6-211ENST00000572369 ABCC9O60706 1549 aa17.67■□□□□ 0.42
SMG6-211ENST00000572369 DNAJC5BQ9UF47 199 aa17.56■□□□□ 0.4
SMG6-211ENST00000572369 DNAJC5Q9H3Z4 198 aa16.97■□□□□ 0.31
SMG6-211ENST00000572369 CCDC180Q9P1Z9 1646 aa16.67■□□□□ 0.26
SMG6-211ENST00000572369 RB1CC1Q8TDY2 1594 aa16.34■□□□□ 0.21
SMG6-211ENST00000572369 PABPN1Q86U42 306 aaKnown RBP eCLIP16.24■□□□□ 0.19
SMG6-211ENST00000572369 CECR2Q9BXF3 1484 aa16.05■□□□□ 0.16
SMG6-211ENST00000572369 UNC13AQ9UPW8 1703 aa15.95■□□□□ 0.14
SMG6-211ENST00000572369 NACADO15069 1562 aa15.94■□□□□ 0.14
SMG6-211ENST00000572369 CC2D2AQ9P2K1 1620 aa15.92■□□□□ 0.14
SMG6-211ENST00000572369 BICRAQ9NZM4 1560 aa15.92■□□□□ 0.14
SMG6-211ENST00000572369 DCAF8L2P0C7V8 631 aa15.76■□□□□ 0.11
SMG6-211ENST00000572369 TRIM41Q8WV44 630 aa15.75■□□□□ 0.11
SMG6-211ENST00000572369 CUX2O14529 1486 aa15.72■□□□□ 0.11
SMG6-211ENST00000572369 EIF4G1Q04637 1599 aaKnown RBP15.62■□□□□ 0.09
SMG6-211ENST00000572369 SHROOM4Q9ULL8 1493 aa15.61■□□□□ 0.09
SMG6-211ENST00000572369 ZCCHC6Q5VYS8 1495 aaKnown RBP15.58■□□□□ 0.08
SMG6-211ENST00000572369 MYO15BQ96JP2 1530 aa15.5■□□□□ 0.07
SMG6-211ENST00000572369 DCAF1Q9Y4B6 1507 aa15.45■□□□□ 0.06
SMG6-211ENST00000572369 ERCC6Q03468 1493 aa15.35■□□□□ 0.05
SMG6-211ENST00000572369 SCRIBQ14160 1630 aa15.25■□□□□ 0.03
SMG6-211ENST00000572369 AEBP2Q6ZN18 517 aaPredicted RBP15.12■□□□□ 0.01
SMG6-211ENST00000572369 THOC2Q8NI27 1593 aaKnown RBP14.98□□□□□ -0.01
SMG6-211ENST00000572369 NESP48681 1621 aa14.86□□□□□ -0.03
SMG6-211ENST00000572369 BAZ1AQ9NRL2 1556 aaPredicted RBP14.81□□□□□ -0.04
SMG6-211ENST00000572369 OSCARQ8IYS5 282 aa14.76□□□□□ -0.05
SMG6-211ENST00000572369 SMARCA2P51531 1590 aa14.76□□□□□ -0.05
SMG6-211ENST00000572369 RIMBP3CA6NJZ7 1639 aa14.75□□□□□ -0.05
SMG6-211ENST00000572369 RIMBP3BA6NNM3 1639 aa14.75□□□□□ -0.05
SMG6-211ENST00000572369 RIMBP3Q9UFD9 1639 aa14.75□□□□□ -0.05
SMG6-211ENST00000572369 NCAPD3P42695 1498 aa14.72□□□□□ -0.05
SMG6-211ENST00000572369 ILDR1Q86SU0 546 aaPredicted RBP14.72□□□□□ -0.05
SMG6-211ENST00000572369 TRHP20396 242 aaPredicted RBP14.7□□□□□ -0.06
SMG6-211ENST00000572369 KIF21AQ7Z4S6 1674 aa14.65□□□□□ -0.06
SMG6-211ENST00000572369 LAMC3Q9Y6N6 1575 aa14.59□□□□□ -0.07
SMG6-211ENST00000572369 ARHGEF11O15085 1522 aa14.58□□□□□ -0.08
SMG6-211ENST00000572369 SMARCA4P51532 1647 aa14.55□□□□□ -0.08
SMG6-211ENST00000572369 HMGXB3Q12766 1538 aa14.54□□□□□ -0.08
SMG6-211ENST00000572369 ATAD2BQ9ULI0 1458 aa14.52□□□□□ -0.08
SMG6-211ENST00000572369 PDS5BQ9NTI5 1447 aa14.52□□□□□ -0.08
SMG6-211ENST00000572369 WDR62O43379 1518 aa14.51□□□□□ -0.09
SMG6-211ENST00000572369 CYB5RLQ6IPT4 315 aa14.49□□□□□ -0.09
SMG6-211ENST00000572369 MRC2Q9UBG0 1479 aa14.49□□□□□ -0.09
SMG6-211ENST00000572369 MROH2BQ7Z745 1585 aa14.43□□□□□ -0.1
SMG6-211ENST00000572369 ARAP1Q96P48 1450 aa14.37□□□□□ -0.11
SMG6-211ENST00000572369 BAZ1BQ9UIG0 1483 aaKnown RBP14.37□□□□□ -0.11
SMG6-211ENST00000572369 PEG3Q9GZU2 1588 aa14.35□□□□□ -0.11
SMG6-211ENST00000572369 WIZO95785 1651 aa14.31□□□□□ -0.12
SMG6-211ENST00000572369 RSF1Q96T23 1441 aaPredicted RBP14.24□□□□□ -0.13
SMG6-211ENST00000572369 CADPSQ9ULU8 1353 aa14.22□□□□□ -0.13
SMG6-211ENST00000572369 CEP164Q9UPV0 1460 aa14.19□□□□□ -0.14
SMG6-211ENST00000572369 TOP2AP11388 1531 aaKnown RBP14.13□□□□□ -0.15
SMG6-211ENST00000572369 FANCD2Q9BXW9 1451 aa14.06□□□□□ -0.16
SMG6-211ENST00000572369 ZNF608Q9ULD9 1512 aaPredicted RBP14.05□□□□□ -0.16
SMG6-211ENST00000572369 URB2Q14146 1524 aaKnown RBP14.04□□□□□ -0.16
SMG6-211ENST00000572369 CHD1O14646 1710 aa14.02□□□□□ -0.16
SMG6-211ENST00000572369 SUPT5HO00267 1087 aaKnown RBP13.99□□□□□ -0.17
SMG6-211ENST00000572369 KDM4FA0A1W2PPD8 638 aa13.98□□□□□ -0.17
SMG6-211ENST00000572369 CCDC88BA6NC98 1476 aa13.95□□□□□ -0.18
SMG6-211ENST00000572369 IFT140Q96RY7 1462 aa13.95□□□□□ -0.18
SMG6-211ENST00000572369 LMTK3Q96Q04 1460 aa13.94□□□□□ -0.18
SMG6-211ENST00000572369 ERCC6L2Q5T890 1561 aa13.94□□□□□ -0.18
SMG6-211ENST00000572369 EIF4G3O43432 1585 aaKnown RBP13.93□□□□□ -0.18
SMG6-211ENST00000572369 FBXO41Q8TF61 875 aa13.93□□□□□ -0.18
SMG6-211ENST00000572369 PRDM2Q13029 1718 aa13.91□□□□□ -0.18
SMG6-211ENST00000572369 CFTRP13569 1480 aa13.91□□□□□ -0.18
SMG6-211ENST00000572369 SOCS7O14512 581 aa13.86□□□□□ -0.19
SMG6-211ENST00000572369 FBLN2P98095 1184 aa13.86□□□□□ -0.19
SMG6-211ENST00000572369 CLASP1Q7Z460 1538 aa13.85□□□□□ -0.19
SMG6-211ENST00000572369 HECW2Q9P2P5 1572 aa13.83□□□□□ -0.19
SMG6-211ENST00000572369 GAPVD1Q14C86 1478 aa13.78□□□□□ -0.2
SMG6-211ENST00000572369 KIF13AQ9H1H9 1805 aa13.76□□□□□ -0.21
SMG6-211ENST00000572369 AQRO60306 1485 aaKnown RBP eCLIP13.75□□□□□ -0.21
SMG6-211ENST00000572369 ILDR2Q71H61 639 aa13.73□□□□□ -0.21
SMG6-211ENST00000572369 SYNJ1O43426 1573 aa13.73□□□□□ -0.21
SMG6-211ENST00000572369 TOPBP1Q92547 1522 aa13.68□□□□□ -0.22
SMG6-211ENST00000572369 ABCC8Q09428 1581 aa13.66□□□□□ -0.22
SMG6-211ENST00000572369 KDM6BO15054 1643 aa13.66□□□□□ -0.22
SMG6-211ENST00000572369 TARBP1Q13395 1621 aaKnown RBP13.65□□□□□ -0.22
SMG6-211ENST00000572369 ADGRL1O94910 1474 aa13.65□□□□□ -0.22
SMG6-211ENST00000572369 DNMBPQ6XZF7 1577 aa13.64□□□□□ -0.23
SMG6-211ENST00000572369 SYNJ2O15056 1496 aa13.64□□□□□ -0.23
SMG6-211ENST00000572369 SNAPC4Q5SXM2 1469 aa13.61□□□□□ -0.23
SMG6-211ENST00000572369 DISP3Q9P2K9 1392 aa13.6□□□□□ -0.23
SMG6-211ENST00000572369 CHMP7Q8WUX9 453 aaPredicted RBP13.58□□□□□ -0.24
SMG6-211ENST00000572369 ABCC10Q5T3U5 1492 aa13.54□□□□□ -0.24
SMG6-211ENST00000572369 FAM69CQ0P6D2 419 aa13.53□□□□□ -0.24
SMG6-211ENST00000572369 CUX1P39880 1505 aa13.53□□□□□ -0.24
SMG6-211ENST00000572369 POLA1P09884 1462 aaPredicted RBP13.52□□□□□ -0.25
SMG6-211ENST00000572369 MAGI1Q96QZ7 1491 aaPredicted RBP13.52□□□□□ -0.25
SMG6-211ENST00000572369 FGD5Q6ZNL6 1462 aa13.51□□□□□ -0.25
SMG6-211ENST00000572369 DIP2BQ9P265 1576 aa13.49□□□□□ -0.25
SMG6-211ENST00000572369 SOGA1O94964 1423 aa13.48□□□□□ -0.25
SMG6-211ENST00000572369 TDRD9Q8NDG6 1382 aaKnown RBP13.48□□□□□ -0.25
SMG6-211ENST00000572369 RAD54L2Q9Y4B4 1467 aa13.48□□□□□ -0.25
SMG6-211ENST00000572369 WRNQ14191 1432 aaPredicted RBP eCLIP13.47□□□□□ -0.25
SMG6-211ENST00000572369 WDR97A6NE52 1622 aa13.45□□□□□ -0.26
SMG6-211ENST00000572369 BIVM-ERCC5R4GMW8 1640 aa13.45□□□□□ -0.26
SMG6-211ENST00000572369 TOP2BQ02880 1626 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms