RNA–Protein interactions for RNA: ENST00000568539.1

SF3B3-212, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-212ENST00000568539 HOXD11P31277 338 aaPredicted RBP13.13□□□□□ -0.31
SF3B3-212ENST00000568539 KIF14Q15058 1648 aa13.13□□□□□ -0.31
SF3B3-212ENST00000568539 NCOA2Q15596 1464 aa13.12□□□□□ -0.31
SF3B3-212ENST00000568539 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.11□□□□□ -0.31
SF3B3-212ENST00000568539 GLI2P10070 1586 aa13.11□□□□□ -0.31
SF3B3-212ENST00000568539 DIP2BQ9P265 1576 aa13.11□□□□□ -0.31
SF3B3-212ENST00000568539 FAM69CQ0P6D2 419 aa13.09□□□□□ -0.31
SF3B3-212ENST00000568539 SUPT6HQ7KZ85 1726 aaKnown RBP13.09□□□□□ -0.31
SF3B3-212ENST00000568539 ABCA9Q8IUA7 1624 aa13.09□□□□□ -0.31
SF3B3-212ENST00000568539 TTC37Q6PGP7 1564 aa13.08□□□□□ -0.32
SF3B3-212ENST00000568539 KDM6BO15054 1643 aa13.08□□□□□ -0.32
SF3B3-212ENST00000568539 PHLDB1Q86UU1 1377 aa13.07□□□□□ -0.32
SF3B3-212ENST00000568539 CCNB3Q8WWL7 1395 aa13.07□□□□□ -0.32
SF3B3-212ENST00000568539 GPATCH8Q9UKJ3 1502 aaKnown RBP13.07□□□□□ -0.32
SF3B3-212ENST00000568539 PLCH2O75038 1416 aa13.05□□□□□ -0.32
SF3B3-212ENST00000568539 CD109Q6YHK3 1445 aa13.05□□□□□ -0.32
SF3B3-212ENST00000568539 MYOM3Q5VTT5 1437 aa13.05□□□□□ -0.32
SF3B3-212ENST00000568539 MAP3K4Q9Y6R4 1608 aa13.04□□□□□ -0.32
SF3B3-212ENST00000568539 FOXD4L1Q9NU39 408 aa13.04□□□□□ -0.32
SF3B3-212ENST00000568539 HECW2Q9P2P5 1572 aa13.03□□□□□ -0.32
SF3B3-212ENST00000568539 TSPOAP1O95153 1857 aa13.03□□□□□ -0.32
SF3B3-212ENST00000568539 ARAP3Q8WWN8 1544 aa13.03□□□□□ -0.32
SF3B3-212ENST00000568539 MIA2Q96PC5 1412 aa13.02□□□□□ -0.33
SF3B3-212ENST00000568539 CFDP1Q9UEE9 299 aaPredicted RBP13.01□□□□□ -0.33
SF3B3-212ENST00000568539 FGD6Q6ZV73 1430 aa13.01□□□□□ -0.33
SF3B3-212ENST00000568539 PREX2Q70Z35 1606 aa13.01□□□□□ -0.33
SF3B3-212ENST00000568539 ARHGAP5Q13017 1502 aa13□□□□□ -0.33
SF3B3-212ENST00000568539 FANCAO15360 1455 aa12.99□□□□□ -0.33
SF3B3-212ENST00000568539 EFCAB2Q5VUJ9 269 aa12.99□□□□□ -0.33
SF3B3-212ENST00000568539 CDC42BPAQ5VT25 1732 aa12.99□□□□□ -0.33
SF3B3-212ENST00000568539 MYO5CQ9NQX4 1742 aa12.99□□□□□ -0.33
SF3B3-212ENST00000568539 ITSN2Q9NZM3 1697 aa12.99□□□□□ -0.33
SF3B3-212ENST00000568539 ADGRL1O94910 1474 aa12.98□□□□□ -0.33
SF3B3-212ENST00000568539 RRBP1Q9P2E9 1410 aaKnown RBP12.97□□□□□ -0.33
SF3B3-212ENST00000568539 ZNF644Q9H582 1327 aaPredicted RBP12.97□□□□□ -0.33
SF3B3-212ENST00000568539 TEX14Q8IWB6 1497 aa12.97□□□□□ -0.33
SF3B3-212ENST00000568539 NEO1Q92859 1461 aa12.97□□□□□ -0.33
SF3B3-212ENST00000568539 ZNF777Q9ULD5 760 aaPredicted RBP12.96□□□□□ -0.33
SF3B3-212ENST00000568539 TCOF1Q13428 1488 aaKnown RBP12.96□□□□□ -0.34
SF3B3-212ENST00000568539 CDC42BPBQ9Y5S2 1711 aa12.96□□□□□ -0.34
SF3B3-212ENST00000568539 PPRC1Q5VV67 1664 aaKnown RBP12.96□□□□□ -0.34
SF3B3-212ENST00000568539 CAMSAP2Q08AD1 1489 aa12.95□□□□□ -0.34
SF3B3-212ENST00000568539 AKNAQ7Z591 1439 aa12.95□□□□□ -0.34
SF3B3-212ENST00000568539 SAMD9LQ8IVG5 1584 aa12.94□□□□□ -0.34
SF3B3-212ENST00000568539 PTPN23Q9H3S7 1636 aa12.94□□□□□ -0.34
SF3B3-212ENST00000568539 KIAA1107Q9UPP5 1409 aa12.94□□□□□ -0.34
SF3B3-212ENST00000568539 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.94□□□□□ -0.34
SF3B3-212ENST00000568539 PLEKHH2Q8IVE3 1493 aa12.93□□□□□ -0.34
SF3B3-212ENST00000568539 CFAP74Q9C0B2 1584 aa12.93□□□□□ -0.34
SF3B3-212ENST00000568539 ABCC1P33527 1531 aa12.93□□□□□ -0.34
SF3B3-212ENST00000568539 ARHGEF12Q9NZN5 1544 aa12.92□□□□□ -0.34
SF3B3-212ENST00000568539 MBD5Q9P267 1494 aa12.91□□□□□ -0.34
SF3B3-212ENST00000568539 SCAPERQ9BY12 1400 aa12.91□□□□□ -0.34
SF3B3-212ENST00000568539 HNRNPMP52272 730 aaKnown RBP eCLIP12.91□□□□□ -0.34
SF3B3-212ENST00000568539 FAM50AQ14320 339 aaKnown RBP12.91□□□□□ -0.34
SF3B3-212ENST00000568539 SYCP2Q9BX26 1530 aa12.9□□□□□ -0.34
SF3B3-212ENST00000568539 TRAPPC8Q9Y2L5 1435 aa12.88□□□□□ -0.35
SF3B3-212ENST00000568539 DENND4BO75064 1496 aaPredicted RBP12.88□□□□□ -0.35
SF3B3-212ENST00000568539 POGZQ7Z3K3 1410 aa12.88□□□□□ -0.35
SF3B3-212ENST00000568539 ARHGEF5Q12774 1597 aa12.87□□□□□ -0.35
SF3B3-212ENST00000568539 COL17A1Q9UMD9 1497 aaPredicted RBP12.87□□□□□ -0.35
SF3B3-212ENST00000568539 RSPH4AQ5TD94 716 aa12.87□□□□□ -0.35
SF3B3-212ENST00000568539 ABCC5O15440 1437 aa12.87□□□□□ -0.35
SF3B3-212ENST00000568539 DAPK1P53355 1430 aa12.87□□□□□ -0.35
SF3B3-212ENST00000568539 CCDC141Q6ZP82 1450 aa12.86□□□□□ -0.35
SF3B3-212ENST00000568539 TRIM26Q12899 539 aaPredicted RBP12.86□□□□□ -0.35
SF3B3-212ENST00000568539 AFAP1Q8N556 730 aa12.86□□□□□ -0.35
SF3B3-212ENST00000568539 ZNF518AQ6AHZ1 1483 aa12.85□□□□□ -0.35
SF3B3-212ENST00000568539 RAPGEF3O95398 923 aa12.85□□□□□ -0.35
SF3B3-212ENST00000568539 SLC4A2P04920 1241 aa12.85□□□□□ -0.35
SF3B3-212ENST00000568539 DNMT1P26358 1616 aaKnown RBP12.84□□□□□ -0.35
SF3B3-212ENST00000568539 PTPRKQ15262 1439 aa12.84□□□□□ -0.35
SF3B3-212ENST00000568539 FRMPD1Q5SYB0 1578 aa12.83□□□□□ -0.36
SF3B3-212ENST00000568539 ITGAEP38570 1179 aa12.83□□□□□ -0.36
SF3B3-212ENST00000568539 SHANK2Q9UPX8 1470 aa12.83□□□□□ -0.36
SF3B3-212ENST00000568539 KDM5CP41229 1560 aa12.82□□□□□ -0.36
SF3B3-212ENST00000568539 TSPY4P0CV99 314 aa12.82□□□□□ -0.36
SF3B3-212ENST00000568539 TSPY10P0CW01 314 aa12.82□□□□□ -0.36
SF3B3-212ENST00000568539 C9orf84Q5VXU9 1444 aa12.81□□□□□ -0.36
SF3B3-212ENST00000568539 SPAG9O60271 1321 aaKnown RBP12.81□□□□□ -0.36
SF3B3-212ENST00000568539 RTEL1-TNFRSF6BF6WH68 1400 aa12.8□□□□□ -0.36
SF3B3-212ENST00000568539 MLH3Q9UHC1 1453 aa12.8□□□□□ -0.36
SF3B3-212ENST00000568539 ZMYM4Q5VZL5 1548 aa12.8□□□□□ -0.36
SF3B3-212ENST00000568539 MAST1Q9Y2H9 1570 aa12.8□□□□□ -0.36
SF3B3-212ENST00000568539 RICTORQ6R327 1708 aa12.79□□□□□ -0.36
SF3B3-212ENST00000568539 CHIC2Q9UKJ5 165 aa12.79□□□□□ -0.36
SF3B3-212ENST00000568539 ADGRL2O95490 1459 aa12.78□□□□□ -0.36
SF3B3-212ENST00000568539 ZFYVE16Q7Z3T8 1539 aa12.78□□□□□ -0.36
SF3B3-212ENST00000568539 INO80Q9ULG1 1556 aaPredicted RBP12.78□□□□□ -0.36
SF3B3-212ENST00000568539 CROCC2H7BZ55 1655 aa12.78□□□□□ -0.36
SF3B3-212ENST00000568539 ROCK1Q13464 1354 aa12.78□□□□□ -0.36
SF3B3-212ENST00000568539 MAGI2Q86UL8 1455 aa12.78□□□□□ -0.36
SF3B3-212ENST00000568539 ATP7AQ04656 1500 aa12.78□□□□□ -0.36
SF3B3-212ENST00000568539 NCOA1Q15788 1441 aa12.77□□□□□ -0.37
SF3B3-212ENST00000568539 FBXO41Q8TF61 875 aa12.76□□□□□ -0.37
SF3B3-212ENST00000568539 ANKRD30AQ9BXX3 1397 aa12.76□□□□□ -0.37
SF3B3-212ENST00000568539 YEATS2Q9ULM3 1422 aa12.76□□□□□ -0.37
SF3B3-212ENST00000568539 PLXNC1O60486 1568 aa12.74□□□□□ -0.37
SF3B3-212ENST00000568539 RRP7BPQ9NSQ0 103 aa12.74□□□□□ -0.37
SF3B3-212ENST00000568539 MYT1LQ9UL68 1186 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 8.4 ms