RNA–Protein interactions for RNA: ENST00000568539.1

SF3B3-212, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-212ENST00000568539 NISCHQ9Y2I1 1504 aa19.99■□□□□ 0.79
SF3B3-212ENST00000568539 AEBP2Q6ZN18 517 aaPredicted RBP19.47■□□□□ 0.71
SF3B3-212ENST00000568539 CHIC1Q5VXU3 224 aa19.45■□□□□ 0.7
SF3B3-212ENST00000568539 CCDC180Q9P1Z9 1646 aa17.58■□□□□ 0.41
SF3B3-212ENST00000568539 PHF23Q9BUL5 403 aaPredicted RBP17.17■□□□□ 0.34
SF3B3-212ENST00000568539 ABCC9O60706 1549 aa17.06■□□□□ 0.32
SF3B3-212ENST00000568539 ZCCHC6Q5VYS8 1495 aaKnown RBP16.72■□□□□ 0.27
SF3B3-212ENST00000568539 DCAF8L2P0C7V8 631 aa16.56■□□□□ 0.24
SF3B3-212ENST00000568539 DCAF1Q9Y4B6 1507 aa16.55■□□□□ 0.24
SF3B3-212ENST00000568539 MYO15BQ96JP2 1530 aa16.51■□□□□ 0.23
SF3B3-212ENST00000568539 DNAJC5BQ9UF47 199 aa16.5■□□□□ 0.23
SF3B3-212ENST00000568539 NACADO15069 1562 aa16.49■□□□□ 0.23
SF3B3-212ENST00000568539 RB1CC1Q8TDY2 1594 aa16.43■□□□□ 0.22
SF3B3-212ENST00000568539 SENP3Q9H4L4 574 aaPredicted RBP16.4■□□□□ 0.22
SF3B3-212ENST00000568539 SCRIBQ14160 1630 aa16.08■□□□□ 0.17
SF3B3-212ENST00000568539 SHROOM4Q9ULL8 1493 aa15.98■□□□□ 0.15
SF3B3-212ENST00000568539 UNC13AQ9UPW8 1703 aa15.97■□□□□ 0.15
SF3B3-212ENST00000568539 PLPPR3Q6T4P5 718 aa15.94■□□□□ 0.14
SF3B3-212ENST00000568539 BICRAQ9NZM4 1560 aa15.93■□□□□ 0.14
SF3B3-212ENST00000568539 PABPN1Q86U42 306 aaKnown RBP eCLIP15.91■□□□□ 0.14
SF3B3-212ENST00000568539 CECR2Q9BXF3 1484 aa15.55■□□□□ 0.08
SF3B3-212ENST00000568539 EIF4G1Q04637 1599 aaKnown RBP15.49■□□□□ 0.07
SF3B3-212ENST00000568539 BAZ1AQ9NRL2 1556 aaPredicted RBP15.46■□□□□ 0.07
SF3B3-212ENST00000568539 DNAJC5Q9H3Z4 198 aa15.44■□□□□ 0.06
SF3B3-212ENST00000568539 SMARCA4P51532 1647 aa15.42■□□□□ 0.06
SF3B3-212ENST00000568539 MROH2BQ7Z745 1585 aa15.41■□□□□ 0.06
SF3B3-212ENST00000568539 CC2D2AQ9P2K1 1620 aa15.37■□□□□ 0.05
SF3B3-212ENST00000568539 RSF1Q96T23 1441 aaPredicted RBP15.36■□□□□ 0.05
SF3B3-212ENST00000568539 ATAD2BQ9ULI0 1458 aa15.29■□□□□ 0.04
SF3B3-212ENST00000568539 PEG3Q9GZU2 1588 aa15.28■□□□□ 0.04
SF3B3-212ENST00000568539 SMARCA2P51531 1590 aa15.26■□□□□ 0.03
SF3B3-212ENST00000568539 NCAPD3P42695 1498 aa15.24■□□□□ 0.03
SF3B3-212ENST00000568539 WIZO95785 1651 aa15.22■□□□□ 0.03
SF3B3-212ENST00000568539 SUPT5HO00267 1087 aaKnown RBP15.18■□□□□ 0.02
SF3B3-212ENST00000568539 HMGXB3Q12766 1538 aa15.17■□□□□ 0.02
SF3B3-212ENST00000568539 BAZ1BQ9UIG0 1483 aaKnown RBP15.17■□□□□ 0.02
SF3B3-212ENST00000568539 FOXD1Q16676 465 aa15.17■□□□□ 0.02
SF3B3-212ENST00000568539 TOP2AP11388 1531 aaKnown RBP15.11■□□□□ 0.01
SF3B3-212ENST00000568539 PPP6R1Q9UPN7 881 aa14.96□□□□□ -0.01
SF3B3-212ENST00000568539 CCDC88BA6NC98 1476 aa14.95□□□□□ -0.02
SF3B3-212ENST00000568539 ADRA2BP18089 450 aa14.93□□□□□ -0.02
SF3B3-212ENST00000568539 CUX2O14529 1486 aa14.82□□□□□ -0.04
SF3B3-212ENST00000568539 CADPSQ9ULU8 1353 aa14.81□□□□□ -0.04
SF3B3-212ENST00000568539 CFTRP13569 1480 aa14.79□□□□□ -0.04
SF3B3-212ENST00000568539 NESP48681 1621 aa14.77□□□□□ -0.05
SF3B3-212ENST00000568539 LAMC3Q9Y6N6 1575 aa14.76□□□□□ -0.05
SF3B3-212ENST00000568539 ERCC6Q03468 1493 aa14.7□□□□□ -0.06
SF3B3-212ENST00000568539 PDS5BQ9NTI5 1447 aa14.66□□□□□ -0.06
SF3B3-212ENST00000568539 TRIM41Q8WV44 630 aa14.64□□□□□ -0.07
SF3B3-212ENST00000568539 FANCD2Q9BXW9 1451 aa14.63□□□□□ -0.07
SF3B3-212ENST00000568539 PRDM2Q13029 1718 aa14.58□□□□□ -0.08
SF3B3-212ENST00000568539 CEP164Q9UPV0 1460 aa14.57□□□□□ -0.08
SF3B3-212ENST00000568539 KIF21AQ7Z4S6 1674 aa14.53□□□□□ -0.08
SF3B3-212ENST00000568539 THOC2Q8NI27 1593 aaKnown RBP14.51□□□□□ -0.09
SF3B3-212ENST00000568539 MRC2Q9UBG0 1479 aa14.5□□□□□ -0.09
SF3B3-212ENST00000568539 ABCC8Q09428 1581 aa14.47□□□□□ -0.09
SF3B3-212ENST00000568539 URB2Q14146 1524 aaKnown RBP14.47□□□□□ -0.09
SF3B3-212ENST00000568539 WRNQ14191 1432 aaPredicted RBP eCLIP14.47□□□□□ -0.09
SF3B3-212ENST00000568539 WDR62O43379 1518 aa14.44□□□□□ -0.1
SF3B3-212ENST00000568539 CUX1P39880 1505 aa14.44□□□□□ -0.1
SF3B3-212ENST00000568539 TOPBP1Q92547 1522 aa14.43□□□□□ -0.1
SF3B3-212ENST00000568539 DNMBPQ6XZF7 1577 aa14.43□□□□□ -0.1
SF3B3-212ENST00000568539 SYNJ1O43426 1573 aa14.4□□□□□ -0.1
SF3B3-212ENST00000568539 TOP2BQ02880 1626 aa14.37□□□□□ -0.11
SF3B3-212ENST00000568539 PIAS4Q8N2W9 510 aaPredicted RBP14.36□□□□□ -0.11
SF3B3-212ENST00000568539 BIVM-ERCC5R4GMW8 1640 aa14.36□□□□□ -0.11
SF3B3-212ENST00000568539 FGD5Q6ZNL6 1462 aa14.34□□□□□ -0.11
SF3B3-212ENST00000568539 POLA1P09884 1462 aaPredicted RBP14.33□□□□□ -0.12
SF3B3-212ENST00000568539 KCNA4P22459 653 aa14.3□□□□□ -0.12
SF3B3-212ENST00000568539 SOGA1O94964 1423 aa14.28□□□□□ -0.12
SF3B3-212ENST00000568539 IFT140Q96RY7 1462 aa14.26□□□□□ -0.13
SF3B3-212ENST00000568539 RAD54L2Q9Y4B4 1467 aa14.26□□□□□ -0.13
SF3B3-212ENST00000568539 TARBP1Q13395 1621 aaKnown RBP14.23□□□□□ -0.13
SF3B3-212ENST00000568539 ABCA10Q8WWZ4 1543 aa14.22□□□□□ -0.13
SF3B3-212ENST00000568539 ZNF608Q9ULD9 1512 aaPredicted RBP14.18□□□□□ -0.14
SF3B3-212ENST00000568539 TDRD9Q8NDG6 1382 aaKnown RBP14.17□□□□□ -0.14
SF3B3-212ENST00000568539 WDR97A6NE52 1622 aa14.16□□□□□ -0.14
SF3B3-212ENST00000568539 AQRO60306 1485 aaKnown RBP eCLIP14.14□□□□□ -0.158e-9■■■■■ 37.9
SF3B3-212ENST00000568539 KIF27Q86VH2 1401 aa14.14□□□□□ -0.15
SF3B3-212ENST00000568539 GAPVD1Q14C86 1478 aa14.12□□□□□ -0.15
SF3B3-212ENST00000568539 ABCA5Q8WWZ7 1642 aa14.12□□□□□ -0.15
SF3B3-212ENST00000568539 RUSC2Q8N2Y8 1516 aa14.11□□□□□ -0.15
SF3B3-212ENST00000568539 EIF4G3O43432 1585 aaKnown RBP14.11□□□□□ -0.15
SF3B3-212ENST00000568539 PPP4R3CPQ6ZMV5 832 aa14.1□□□□□ -0.15
SF3B3-212ENST00000568539 EEA1Q15075 1411 aa14.07□□□□□ -0.16
SF3B3-212ENST00000568539 GRIN2BQ13224 1484 aa14.07□□□□□ -0.16
SF3B3-212ENST00000568539 RIMBP3CA6NJZ7 1639 aa14.07□□□□□ -0.16
SF3B3-212ENST00000568539 RIMBP3BA6NNM3 1639 aa14.07□□□□□ -0.16
SF3B3-212ENST00000568539 RIMBP3Q9UFD9 1639 aa14.07□□□□□ -0.16
SF3B3-212ENST00000568539 IGF1RP08069 1367 aa14.06□□□□□ -0.16
SF3B3-212ENST00000568539 ERICH3Q5RHP9 1530 aa14.05□□□□□ -0.16
SF3B3-212ENST00000568539 FAM9AQ8IZU1 332 aaPredicted RBP14.02□□□□□ -0.17
SF3B3-212ENST00000568539 SNAPC4Q5SXM2 1469 aa14.01□□□□□ -0.17
SF3B3-212ENST00000568539 CSRNP3Q8WYN3 585 aa14.01□□□□□ -0.17
SF3B3-212ENST00000568539 PBRM1Q86U86 1689 aa14□□□□□ -0.17
SF3B3-212ENST00000568539 MAGI1Q96QZ7 1491 aaPredicted RBP13.99□□□□□ -0.17
SF3B3-212ENST00000568539 FHAD1B1AJZ9 1412 aa13.97□□□□□ -0.17
SF3B3-212ENST00000568539 CARMIL1Q5VZK9 1371 aa13.96□□□□□ -0.17
SF3B3-212ENST00000568539 ADAMTS12P58397 1594 aa13.96□□□□□ -0.17
SF3B3-212ENST00000568539 PRXQ9BXM0 1461 aa13.96□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms