RNA–Protein interactions for RNA: ENST00000567935.1

COMMD4-221, Transcript of COMM domain containing 4, humanhuman

TSL 3

Gene COMMD4, Length 502 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-221ENST00000567935 RICTORQ6R327 1708 aa22.35■■□□□ 1.17
COMMD4-221ENST00000567935 TTC37Q6PGP7 1564 aa22.35■■□□□ 1.17
COMMD4-221ENST00000567935 STRCQ7RTU9 1775 aa22.35■■□□□ 1.17
COMMD4-221ENST00000567935 FHOD3Q2V2M9 1422 aa22.34■■□□□ 1.17
COMMD4-221ENST00000567935 DENND4BO75064 1496 aaPredicted RBP22.34■■□□□ 1.17
COMMD4-221ENST00000567935 CASKIN1Q8WXD9 1431 aa22.33■■□□□ 1.17
COMMD4-221ENST00000567935 FER1L4A9Z1Z3 1794 aa22.33■■□□□ 1.16
COMMD4-221ENST00000567935 AKNAQ7Z591 1439 aa22.32■■□□□ 1.16
COMMD4-221ENST00000567935 MLECQ14165 292 aa22.32■■□□□ 1.16
COMMD4-221ENST00000567935 PREX1Q8TCU6 1659 aa22.31■■□□□ 1.16
COMMD4-221ENST00000567935 TIAM1Q13009 1591 aa22.31■■□□□ 1.16
COMMD4-221ENST00000567935 HRCP23327 699 aa22.28■■□□□ 1.16
COMMD4-221ENST00000567935 DMRT2Q9Y5R5 561 aa22.28■■□□□ 1.16
COMMD4-221ENST00000567935 ZFYVE16Q7Z3T8 1539 aa22.27■■□□□ 1.16
COMMD4-221ENST00000567935 ZMYM4Q5VZL5 1548 aa22.26■■□□□ 1.15
COMMD4-221ENST00000567935 CEBPAP49715 358 aaPredicted RBP22.24■■□□□ 1.15
COMMD4-221ENST00000567935 P3H3Q8IVL6 736 aa22.24■■□□□ 1.15
COMMD4-221ENST00000567935 LTBP4Q8N2S1 1624 aa22.23■■□□□ 1.15
COMMD4-221ENST00000567935 ARHGEF12Q9NZN5 1544 aa22.22■■□□□ 1.15
COMMD4-221ENST00000567935 LRRC9Q6ZRR7 1453 aa22.2■■□□□ 1.14
COMMD4-221ENST00000567935 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.19■■□□□ 1.14
COMMD4-221ENST00000567935 HNRNPUL2Q1KMD3 747 aaKnown RBP22.19■■□□□ 1.14
COMMD4-221ENST00000567935 KANK4Q5T7N3 995 aaPredicted RBP22.19■■□□□ 1.14
COMMD4-221ENST00000567935 PTPRTO14522 1441 aa22.19■■□□□ 1.14
COMMD4-221ENST00000567935 HECW1Q76N89 1606 aa22.17■■□□□ 1.14
COMMD4-221ENST00000567935 UHRF1BP1Q6BDS2 1440 aa22.17■■□□□ 1.14
COMMD4-221ENST00000567935 RAPGEF6Q8TEU7 1601 aa22.17■■□□□ 1.14
COMMD4-221ENST00000567935 IQSEC2Q5JU85 1478 aa22.16■■□□□ 1.14
COMMD4-221ENST00000567935 MAGI2Q86UL8 1455 aa22.16■■□□□ 1.14
COMMD4-221ENST00000567935 CFAP74Q9C0B2 1584 aa22.16■■□□□ 1.14
COMMD4-221ENST00000567935 CCDC18Q5T9S5 1454 aa22.15■■□□□ 1.14
COMMD4-221ENST00000567935 RRBP1Q9P2E9 1410 aaKnown RBP22.14■■□□□ 1.13
COMMD4-221ENST00000567935 ZEB1P37275 1124 aaPredicted RBP22.12■■□□□ 1.13
COMMD4-221ENST00000567935 NUP153P49790 1475 aaKnown RBP22.11■■□□□ 1.13
COMMD4-221ENST00000567935 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP22.1■■□□□ 1.13
COMMD4-221ENST00000567935 ATP10AO60312 1499 aa22.08■■□□□ 1.12
COMMD4-221ENST00000567935 C9orf84Q5VXU9 1444 aa22.07■■□□□ 1.12
COMMD4-221ENST00000567935 ATP1B4Q9UN42 357 aaPredicted RBP22.06■■□□□ 1.12
COMMD4-221ENST00000567935 SCAPERQ9BY12 1400 aa22.04■■□□□ 1.12
COMMD4-221ENST00000567935 CCNB3Q8WWL7 1395 aa22.03■■□□□ 1.12
COMMD4-221ENST00000567935 EHBP1L1Q8N3D4 1523 aa22.03■■□□□ 1.12
COMMD4-221ENST00000567935 SETD1BQ9UPS6 1966 aaKnown RBP22.03■■□□□ 1.12
COMMD4-221ENST00000567935 MTUS2Q5JR59 1369 aa22.01■■□□□ 1.11
COMMD4-221ENST00000567935 LRRIQ1Q96JM4 1722 aa22.01■■□□□ 1.11
COMMD4-221ENST00000567935 PLEKHD1A6NEE1 506 aa22.01■■□□□ 1.11
COMMD4-221ENST00000567935 UBAP1LF5GYI3 381 aa22.01■■□□□ 1.11
COMMD4-221ENST00000567935 NCOA1Q15788 1441 aa22■■□□□ 1.11
COMMD4-221ENST00000567935 MED1Q15648 1581 aaPredicted RBP21.99■■□□□ 1.11
COMMD4-221ENST00000567935 C3P01024 1663 aa21.97■■□□□ 1.11
COMMD4-221ENST00000567935 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.97■■□□□ 1.11
COMMD4-221ENST00000567935 SUPT6HQ7KZ85 1726 aaKnown RBP21.96■■□□□ 1.11
COMMD4-221ENST00000567935 ZNF335Q9H4Z2 1342 aaPredicted RBP21.95■■□□□ 1.1
COMMD4-221ENST00000567935 PLCH2O75038 1416 aa21.91■■□□□ 1.1
COMMD4-221ENST00000567935 TRAPPC8Q9Y2L5 1435 aa21.9■■□□□ 1.1
COMMD4-221ENST00000567935 CAMSAP1Q5T5Y3 1602 aa21.89■■□□□ 1.09
COMMD4-221ENST00000567935 HSPA1LP34931 641 aa21.88■■□□□ 1.09
COMMD4-221ENST00000567935 NCOA2Q15596 1464 aa21.88■■□□□ 1.09
COMMD4-221ENST00000567935 CDK11AQ9UQ88 783 aaPredicted RBP21.87■■□□□ 1.09
COMMD4-221ENST00000567935 CCER1Q8TC90 406 aaPredicted RBP21.86■■□□□ 1.09
COMMD4-221ENST00000567935 DIP2CQ9Y2E4 1556 aa21.86■■□□□ 1.09
COMMD4-221ENST00000567935 NCKAP5LQ9HCH0 1330 aa21.85■■□□□ 1.09
COMMD4-221ENST00000567935 CDK13Q14004 1512 aaKnown RBP21.85■■□□□ 1.09
COMMD4-221ENST00000567935 MYOM3Q5VTT5 1437 aa21.84■■□□□ 1.09
COMMD4-221ENST00000567935 FGD6Q6ZV73 1430 aa21.84■■□□□ 1.09
COMMD4-221ENST00000567935 ZNF518AQ6AHZ1 1483 aa21.83■■□□□ 1.09
COMMD4-221ENST00000567935 KDM5CP41229 1560 aa21.83■■□□□ 1.09
COMMD4-221ENST00000567935 REREQ9P2R6 1566 aa21.82■■□□□ 1.08
COMMD4-221ENST00000567935 AFAP1Q8N556 730 aa21.81■■□□□ 1.08
COMMD4-221ENST00000567935 EFCAB2Q5VUJ9 269 aa21.8■■□□□ 1.08
COMMD4-221ENST00000567935 ABCA6Q8N139 1617 aa21.8■■□□□ 1.08
COMMD4-221ENST00000567935 SCAF1Q9H7N4 1312 aaKnown RBP21.8■■□□□ 1.08
COMMD4-221ENST00000567935 PIP4K2BP78356 416 aa21.78■■□□□ 1.08
COMMD4-221ENST00000567935 ESF1Q9H501 851 aaKnown RBP21.78■■□□□ 1.08
COMMD4-221ENST00000567935 AGLP35573 1532 aa21.77■■□□□ 1.08
COMMD4-221ENST00000567935 PHF23Q9BUL5 403 aaPredicted RBP21.77■■□□□ 1.08
COMMD4-221ENST00000567935 MYT1LQ9UL68 1186 aa21.77■■□□□ 1.08
COMMD4-221ENST00000567935 MIA2Q96PC5 1412 aa21.77■■□□□ 1.08
COMMD4-221ENST00000567935 MYO5CQ9NQX4 1742 aa21.77■■□□□ 1.08
COMMD4-221ENST00000567935 TROQ12816 1431 aaPredicted RBP21.76■■□□□ 1.07
COMMD4-221ENST00000567935 FAM50AQ14320 339 aaKnown RBP21.74■■□□□ 1.07
COMMD4-221ENST00000567935 NPATQ14207 1427 aa21.73■■□□□ 1.07
COMMD4-221ENST00000567935 TCOF1Q13428 1488 aaKnown RBP21.73■■□□□ 1.07
COMMD4-221ENST00000567935 CNTLNQ9NXG0 1405 aa21.72■■□□□ 1.07
COMMD4-221ENST00000567935 PLA2R1Q13018 1463 aa21.71■■□□□ 1.07
COMMD4-221ENST00000567935 PTPN23Q9H3S7 1636 aa21.71■■□□□ 1.07
COMMD4-221ENST00000567935 CLSPNQ9HAW4 1339 aa21.71■■□□□ 1.07
COMMD4-221ENST00000567935 MLH3Q9UHC1 1453 aa21.7■■□□□ 1.06
COMMD4-221ENST00000567935 PKD2Q13563 968 aa21.69■■□□□ 1.06
COMMD4-221ENST00000567935 ARHGAP5Q13017 1502 aa21.69■■□□□ 1.06
COMMD4-221ENST00000567935 KIF14Q15058 1648 aa21.68■■□□□ 1.06
COMMD4-221ENST00000567935 PPP6R1Q9UPN7 881 aa21.67■■□□□ 1.06
COMMD4-221ENST00000567935 ZNF142P52746 1687 aaPredicted RBP21.66■■□□□ 1.06
COMMD4-221ENST00000567935 MROH2AA6NES4 1674 aa21.66■■□□□ 1.06
COMMD4-221ENST00000567935 MYO3AQ8NEV4 1616 aa21.66■■□□□ 1.06
COMMD4-221ENST00000567935 SETD5Q9C0A6 1442 aa21.65■■□□□ 1.06
COMMD4-221ENST00000567935 TOM1O60784 492 aa21.65■■□□□ 1.06
COMMD4-221ENST00000567935 ITSN2Q9NZM3 1697 aa21.65■■□□□ 1.06
COMMD4-221ENST00000567935 ZMYM3Q14202 1370 aa21.64■■□□□ 1.06
COMMD4-221ENST00000567935 CEP170BQ9Y4F5 1589 aaPredicted RBP21.63■■□□□ 1.05
COMMD4-221ENST00000567935 ITGAEP38570 1179 aa21.62■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms