RNA–Protein interactions for RNA: ENST00000559397.5

TPM1-219, Transcript of tropomyosin 1, humanhuman

TSL 2 BASIC

Gene TPM1, Length 1,655 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-219ENST00000559397 MYOM3Q5VTT5 1437 aa25.41■■□□□ 1.66
TPM1-219ENST00000559397 PPRC1Q5VV67 1664 aaKnown RBP25.41■■□□□ 1.66
TPM1-219ENST00000559397 TSPOAP1O95153 1857 aa25.39■■□□□ 1.66
TPM1-219ENST00000559397 ARHGAP5Q13017 1502 aa25.37■■□□□ 1.65
TPM1-219ENST00000559397 CFDP1Q9UEE9 299 aaPredicted RBP25.36■■□□□ 1.65
TPM1-219ENST00000559397 MIA2Q96PC5 1412 aa25.35■■□□□ 1.65
TPM1-219ENST00000559397 FGD6Q6ZV73 1430 aa25.34■■□□□ 1.65
TPM1-219ENST00000559397 FANCAO15360 1455 aa25.33■■□□□ 1.65
TPM1-219ENST00000559397 EFCAB2Q5VUJ9 269 aa25.32■■□□□ 1.64
TPM1-219ENST00000559397 TEX14Q8IWB6 1497 aa25.31■■□□□ 1.64
TPM1-219ENST00000559397 CFAP74Q9C0B2 1584 aa25.3■■□□□ 1.64
TPM1-219ENST00000559397 SAMD9LQ8IVG5 1584 aa25.3■■□□□ 1.64
TPM1-219ENST00000559397 NEO1Q92859 1461 aa25.29■■□□□ 1.64
TPM1-219ENST00000559397 PTPN23Q9H3S7 1636 aa25.28■■□□□ 1.64
TPM1-219ENST00000559397 RRBP1Q9P2E9 1410 aaKnown RBP25.27■■□□□ 1.64
TPM1-219ENST00000559397 ZNF777Q9ULD5 760 aaPredicted RBP25.27■■□□□ 1.64
TPM1-219ENST00000559397 ZNF644Q9H582 1327 aaPredicted RBP25.27■■□□□ 1.64
TPM1-219ENST00000559397 AKNAQ7Z591 1439 aa25.27■■□□□ 1.64
TPM1-219ENST00000559397 TCOF1Q13428 1488 aaKnown RBP25.27■■□□□ 1.64
TPM1-219ENST00000559397 CAMSAP2Q08AD1 1489 aa25.25■■□□□ 1.63
TPM1-219ENST00000559397 ABCC1P33527 1531 aa25.23■■□□□ 1.63
TPM1-219ENST00000559397 ADGRL1O94910 1474 aa25.21■■□□□ 1.63
TPM1-219ENST00000559397 PLEKHH2Q8IVE3 1493 aa25.21■■□□□ 1.63
TPM1-219ENST00000559397 KIAA1107Q9UPP5 1409 aa25.21■■□□□ 1.63
TPM1-219ENST00000559397 ARHGEF12Q9NZN5 1544 aa25.2■■□□□ 1.62
TPM1-219ENST00000559397 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP25.18■■□□□ 1.621e-7■■□□□ 13.6
TPM1-219ENST00000559397 SYCP2Q9BX26 1530 aa25.18■■□□□ 1.62
TPM1-219ENST00000559397 MBD5Q9P267 1494 aa25.17■■□□□ 1.62
TPM1-219ENST00000559397 SCAPERQ9BY12 1400 aa25.17■■□□□ 1.62
TPM1-219ENST00000559397 FAM50AQ14320 339 aaKnown RBP25.17■■□□□ 1.62
TPM1-219ENST00000559397 HNRNPMP52272 730 aaKnown RBP eCLIP25.16■■□□□ 1.62
TPM1-219ENST00000559397 ARHGEF5Q12774 1597 aa25.14■■□□□ 1.61
TPM1-219ENST00000559397 COL17A1Q9UMD9 1497 aaPredicted RBP25.13■■□□□ 1.61
TPM1-219ENST00000559397 TRAPPC8Q9Y2L5 1435 aa25.12■■□□□ 1.61
TPM1-219ENST00000559397 DENND4BO75064 1496 aaPredicted RBP25.12■■□□□ 1.61
TPM1-219ENST00000559397 POGZQ7Z3K3 1410 aa25.1■■□□□ 1.61
TPM1-219ENST00000559397 RICTORQ6R327 1708 aa25.09■■□□□ 1.61
TPM1-219ENST00000559397 DNMT1P26358 1616 aaKnown RBP25.09■■□□□ 1.61
TPM1-219ENST00000559397 RSPH4AQ5TD94 716 aa25.09■■□□□ 1.61
TPM1-219ENST00000559397 ABCC5O15440 1437 aa25.08■■□□□ 1.61
TPM1-219ENST00000559397 CCDC141Q6ZP82 1450 aa25.08■■□□□ 1.61
TPM1-219ENST00000559397 RAPGEF3O95398 923 aa25.07■■□□□ 1.6
TPM1-219ENST00000559397 FRMPD1Q5SYB0 1578 aa25.07■■□□□ 1.6
TPM1-219ENST00000559397 DAPK1P53355 1430 aa25.07■■□□□ 1.6
TPM1-219ENST00000559397 AFAP1Q8N556 730 aa25.07■■□□□ 1.6
TPM1-219ENST00000559397 ZNF518AQ6AHZ1 1483 aa25.06■■□□□ 1.6
TPM1-219ENST00000559397 KDM5CP41229 1560 aa25.05■■□□□ 1.6
TPM1-219ENST00000559397 KDM6BO15054 1643 aa25.05■■□□□ 1.6
TPM1-219ENST00000559397 CROCC2H7BZ55 1655 aa25.04■■□□□ 1.6
TPM1-219ENST00000559397 PTPRKQ15262 1439 aa25.03■■□□□ 1.6
TPM1-219ENST00000559397 SHANK2Q9UPX8 1470 aa25■■□□□ 1.59
TPM1-219ENST00000559397 MAST1Q9Y2H9 1570 aa24.99■■□□□ 1.59
TPM1-219ENST00000559397 ZMYM4Q5VZL5 1548 aa24.99■■□□□ 1.59
TPM1-219ENST00000559397 ITGAEP38570 1179 aa24.99■■□□□ 1.59
TPM1-219ENST00000559397 TSPY4P0CV99 314 aa24.98■■□□□ 1.59
TPM1-219ENST00000559397 TSPY10P0CW01 314 aa24.98■■□□□ 1.59
TPM1-219ENST00000559397 C9orf84Q5VXU9 1444 aa24.97■■□□□ 1.59
TPM1-219ENST00000559397 MLH3Q9UHC1 1453 aa24.97■■□□□ 1.59
TPM1-219ENST00000559397 SPAG9O60271 1321 aaKnown RBP24.97■■□□□ 1.59
TPM1-219ENST00000559397 INO80Q9ULG1 1556 aaPredicted RBP24.96■■□□□ 1.59
TPM1-219ENST00000559397 HECW2Q9P2P5 1572 aa24.96■■□□□ 1.59
TPM1-219ENST00000559397 RTEL1-TNFRSF6BF6WH68 1400 aa24.95■■□□□ 1.59
TPM1-219ENST00000559397 ZFYVE16Q7Z3T8 1539 aa24.95■■□□□ 1.59
TPM1-219ENST00000559397 KIDINS220Q9ULH0 1771 aa24.94■■□□□ 1.58
TPM1-219ENST00000559397 ATP7AQ04656 1500 aa24.93■■□□□ 1.58
TPM1-219ENST00000559397 CHIC2Q9UKJ5 165 aa24.93■■□□□ 1.58
TPM1-219ENST00000559397 MAGI2Q86UL8 1455 aa24.92■■□□□ 1.58
TPM1-219ENST00000559397 ADGRL2O95490 1459 aa24.92■■□□□ 1.58
TPM1-219ENST00000559397 ADGBQ8N7X0 1667 aa24.91■■□□□ 1.58
TPM1-219ENST00000559397 ROCK1Q13464 1354 aa24.89■■□□□ 1.57
TPM1-219ENST00000559397 NCOA1Q15788 1441 aa24.89■■□□□ 1.57
TPM1-219ENST00000559397 HRCP23327 699 aa24.88■■□□□ 1.57
TPM1-219ENST00000559397 YEATS2Q9ULM3 1422 aa24.88■■□□□ 1.57
TPM1-219ENST00000559397 PLXNC1O60486 1568 aa24.88■■□□□ 1.57
TPM1-219ENST00000559397 MYT1LQ9UL68 1186 aa24.87■■□□□ 1.57
TPM1-219ENST00000559397 ABCA6Q8N139 1617 aa24.86■■□□□ 1.57
TPM1-219ENST00000559397 ANKRD30AQ9BXX3 1397 aa24.86■■□□□ 1.57
TPM1-219ENST00000559397 DIP2CQ9Y2E4 1556 aa24.85■■□□□ 1.57
TPM1-219ENST00000559397 ARHGEF40Q8TER5 1519 aa24.83■■□□□ 1.57
TPM1-219ENST00000559397 RRP7BPQ9NSQ0 103 aa24.82■■□□□ 1.56
TPM1-219ENST00000559397 KIF15Q9NS87 1388 aa24.82■■□□□ 1.56
TPM1-219ENST00000559397 ATP10AO60312 1499 aa24.79■■□□□ 1.56
TPM1-219ENST00000559397 HFM1A2PYH4 1435 aa24.78■■□□□ 1.56
TPM1-219ENST00000559397 NAIPQ13075 1403 aa24.78■■□□□ 1.56
TPM1-219ENST00000559397 DUOX2Q9NRD8 1548 aa24.77■■□□□ 1.56
TPM1-219ENST00000559397 A2MP01023 1474 aa24.77■■□□□ 1.56
TPM1-219ENST00000559397 DHX29Q7Z478 1369 aaKnown RBP24.76■■□□□ 1.55
TPM1-219ENST00000559397 REREQ9P2R6 1566 aa24.76■■□□□ 1.55
TPM1-219ENST00000559397 GCC2Q8IWJ2 1684 aa24.76■■□□□ 1.55
TPM1-219ENST00000559397 SIGLEC1Q9BZZ2 1709 aa24.72■■□□□ 1.55
TPM1-219ENST00000559397 ERBINQ96RT1 1412 aa24.71■■□□□ 1.55
TPM1-219ENST00000559397 ANKRD50Q9ULJ7 1429 aa24.71■■□□□ 1.55
TPM1-219ENST00000559397 SETD5Q9C0A6 1442 aa24.69■■□□□ 1.54
TPM1-219ENST00000559397 EIF2AK4Q9P2K8 1649 aaKnown RBP24.67■■□□□ 1.54
TPM1-219ENST00000559397 AGLP35573 1532 aa24.67■■□□□ 1.54
TPM1-219ENST00000559397 BCORL1Q5H9F3 1711 aa24.66■■□□□ 1.54
TPM1-219ENST00000559397 RAB3GAP2Q9H2M9 1393 aa24.62■■□□□ 1.53
TPM1-219ENST00000559397 KIF3BO15066 747 aa24.61■■□□□ 1.53
TPM1-219ENST00000559397 ZEB1P37275 1124 aaPredicted RBP24.6■■□□□ 1.53
TPM1-219ENST00000559397 RNF17Q9BXT8 1623 aaKnown RBP24.59■■□□□ 1.53
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms