RNA–Protein interactions for RNA: ENST00000559397.5

TPM1-219, Transcript of tropomyosin 1, humanhuman

TSL 2 BASIC

Gene TPM1, Length 1,655 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-219ENST00000559397 NISCHQ9Y2I1 1504 aa39.01■■■■□ 3.83
TPM1-219ENST00000559397 CCDC180Q9P1Z9 1646 aa34.4■■■■□ 3.1
TPM1-219ENST00000559397 ABCC9O60706 1549 aa33.11■■■□□ 2.89
TPM1-219ENST00000559397 ZCCHC6Q5VYS8 1495 aaKnown RBP32.62■■■□□ 2.81
TPM1-219ENST00000559397 DCAF8L2P0C7V8 631 aa32.31■■■□□ 2.76
TPM1-219ENST00000559397 DCAF1Q9Y4B6 1507 aa32.3■■■□□ 2.76
TPM1-219ENST00000559397 MYO15BQ96JP2 1530 aa32.22■■■□□ 2.75
TPM1-219ENST00000559397 NACADO15069 1562 aa32.21■■■□□ 2.75
TPM1-219ENST00000559397 RB1CC1Q8TDY2 1594 aa32.09■■■□□ 2.73
TPM1-219ENST00000559397 SCRIBQ14160 1630 aa31.44■■■□□ 2.62
TPM1-219ENST00000559397 UNC13AQ9UPW8 1703 aa31.43■■■□□ 2.62
TPM1-219ENST00000559397 BICRAQ9NZM4 1560 aa31.16■■■□□ 2.58
TPM1-219ENST00000559397 SHROOM4Q9ULL8 1493 aa31.14■■■□□ 2.58
TPM1-219ENST00000559397 PABPN1Q86U42 306 aaKnown RBP eCLIP31.06■■■□□ 2.561e-13■■■□□ 18.2
TPM1-219ENST00000559397 CECR2Q9BXF3 1484 aa30.34■■■□□ 2.45
TPM1-219ENST00000559397 EIF4G1Q04637 1599 aaKnown RBP30.26■■■□□ 2.43
TPM1-219ENST00000559397 BAZ1AQ9NRL2 1556 aaPredicted RBP30.17■■■□□ 2.42
TPM1-219ENST00000559397 SMARCA4P51532 1647 aa30.14■■■□□ 2.42
TPM1-219ENST00000559397 MROH2BQ7Z745 1585 aa30.08■■■□□ 2.41
TPM1-219ENST00000559397 CC2D2AQ9P2K1 1620 aa29.99■■■□□ 2.39
TPM1-219ENST00000559397 RSF1Q96T23 1441 aaPredicted RBP29.94■■■□□ 2.38
TPM1-219ENST00000559397 DNAJC5BQ9UF47 199 aa29.91■■■□□ 2.38
TPM1-219ENST00000559397 PEG3Q9GZU2 1588 aa29.85■■■□□ 2.37
TPM1-219ENST00000559397 ATAD2BQ9ULI0 1458 aa29.83■■■□□ 2.37
TPM1-219ENST00000559397 SMARCA2P51531 1590 aa29.8■■■□□ 2.36
TPM1-219ENST00000559397 WIZO95785 1651 aa29.79■■■□□ 2.36
TPM1-219ENST00000559397 NCAPD3P42695 1498 aa29.73■■■□□ 2.35
TPM1-219ENST00000559397 HMGXB3Q12766 1538 aa29.62■■■□□ 2.33
TPM1-219ENST00000559397 BAZ1BQ9UIG0 1483 aaKnown RBP29.59■■■□□ 2.33
TPM1-219ENST00000559397 SUPT5HO00267 1087 aaKnown RBP29.58■■■□□ 2.33
TPM1-219ENST00000559397 TOP2AP11388 1531 aaKnown RBP29.48■■■□□ 2.31
TPM1-219ENST00000559397 CCDC88BA6NC98 1476 aa29.16■■■□□ 2.26
TPM1-219ENST00000559397 CADPSQ9ULU8 1353 aa28.88■■■□□ 2.21
TPM1-219ENST00000559397 NESP48681 1621 aa28.85■■■□□ 2.21
TPM1-219ENST00000559397 CFTRP13569 1480 aa28.85■■■□□ 2.21
TPM1-219ENST00000559397 LAMC3Q9Y6N6 1575 aa28.84■■■□□ 2.21
TPM1-219ENST00000559397 PRDM2Q13029 1718 aa28.67■■■□□ 2.18
TPM1-219ENST00000559397 PDS5BQ9NTI5 1447 aa28.61■■■□□ 2.17
TPM1-219ENST00000559397 FANCD2Q9BXW9 1451 aa28.55■■■□□ 2.16
TPM1-219ENST00000559397 KIF21AQ7Z4S6 1674 aa28.52■■■□□ 2.16
TPM1-219ENST00000559397 ERCC6Q03468 1493 aa28.46■■■□□ 2.15
TPM1-219ENST00000559397 CEP164Q9UPV0 1460 aa28.44■■■□□ 2.14
TPM1-219ENST00000559397 MRC2Q9UBG0 1479 aa28.29■■■□□ 2.12
TPM1-219ENST00000559397 THOC2Q8NI27 1593 aaKnown RBP28.28■■■□□ 2.12
TPM1-219ENST00000559397 ABCC8Q09428 1581 aa28.27■■■□□ 2.12
TPM1-219ENST00000559397 URB2Q14146 1524 aaKnown RBP28.24■■■□□ 2.11
TPM1-219ENST00000559397 WDR62O43379 1518 aa28.2■■■□□ 2.1
TPM1-219ENST00000559397 WRNQ14191 1432 aaPredicted RBP eCLIP28.19■■■□□ 2.1
TPM1-219ENST00000559397 CUX1P39880 1505 aa28.18■■■□□ 2.1
TPM1-219ENST00000559397 DNMBPQ6XZF7 1577 aa28.17■■■□□ 2.1
TPM1-219ENST00000559397 TOPBP1Q92547 1522 aa28.17■■■□□ 2.1
TPM1-219ENST00000559397 SYNJ1O43426 1573 aa28.12■■■□□ 2.09
TPM1-219ENST00000559397 TOP2BQ02880 1626 aa28.08■■■□□ 2.09
TPM1-219ENST00000559397 BIVM-ERCC5R4GMW8 1640 aa28.08■■■□□ 2.09
TPM1-219ENST00000559397 CHIC1Q5VXU3 224 aa27.98■■■□□ 2.07
TPM1-219ENST00000559397 FGD5Q6ZNL6 1462 aa27.98■■■□□ 2.07
TPM1-219ENST00000559397 CUX2O14529 1486 aa27.97■■■□□ 2.07
TPM1-219ENST00000559397 POLA1P09884 1462 aaPredicted RBP27.97■■■□□ 2.07
TPM1-219ENST00000559397 TRIM41Q8WV44 630 aa27.91■■■□□ 2.06
TPM1-219ENST00000559397 SOGA1O94964 1423 aa27.86■■■□□ 2.05
TPM1-219ENST00000559397 RAD54L2Q9Y4B4 1467 aa27.85■■■□□ 2.05
TPM1-219ENST00000559397 IFT140Q96RY7 1462 aa27.83■■■□□ 2.05
TPM1-219ENST00000559397 TARBP1Q13395 1621 aaKnown RBP27.83■■■□□ 2.05
TPM1-219ENST00000559397 WDR97A6NE52 1622 aa27.74■■■□□ 2.03
TPM1-219ENST00000559397 ABCA10Q8WWZ4 1543 aa27.74■■■□□ 2.03
TPM1-219ENST00000559397 ZNF608Q9ULD9 1512 aaPredicted RBP27.68■■■□□ 2.02
TPM1-219ENST00000559397 TDRD9Q8NDG6 1382 aaKnown RBP27.63■■■□□ 2.01
TPM1-219ENST00000559397 AQRO60306 1485 aaKnown RBP eCLIP27.6■■■□□ 2.012e-12■■■■□ 23
TPM1-219ENST00000559397 ABCA5Q8WWZ7 1642 aa27.59■■■□□ 2.01
TPM1-219ENST00000559397 EIF4G3O43432 1585 aaKnown RBP27.58■■■□□ 2.01
TPM1-219ENST00000559397 KIF27Q86VH2 1401 aa27.55■■■□□ 2
TPM1-219ENST00000559397 GAPVD1Q14C86 1478 aa27.54■■■□□ 2
TPM1-219ENST00000559397 RUSC2Q8N2Y8 1516 aa27.53■■■□□ 2
TPM1-219ENST00000559397 PBRM1Q86U86 1689 aa27.46■■□□□ 1.99
TPM1-219ENST00000559397 GRIN2BQ13224 1484 aa27.45■■□□□ 1.99
TPM1-219ENST00000559397 ERICH3Q5RHP9 1530 aa27.41■■□□□ 1.98
TPM1-219ENST00000559397 IGF1RP08069 1367 aa27.4■■□□□ 1.98
TPM1-219ENST00000559397 EEA1Q15075 1411 aa27.4■■□□□ 1.98
TPM1-219ENST00000559397 SNAPC4Q5SXM2 1469 aa27.35■■□□□ 1.97
TPM1-219ENST00000559397 FAM9AQ8IZU1 332 aaPredicted RBP27.33■■□□□ 1.97
TPM1-219ENST00000559397 MAGI1Q96QZ7 1491 aaPredicted RBP27.32■■□□□ 1.96
TPM1-219ENST00000559397 CSRNP3Q8WYN3 585 aa27.3■■□□□ 1.96
TPM1-219ENST00000559397 ADAMTS12P58397 1594 aa27.27■■□□□ 1.96
TPM1-219ENST00000559397 CUL7Q14999 1698 aa27.27■■□□□ 1.96
TPM1-219ENST00000559397 FHAD1B1AJZ9 1412 aa27.24■■□□□ 1.95
TPM1-219ENST00000559397 CARMIL1Q5VZK9 1371 aa27.23■■□□□ 1.95
TPM1-219ENST00000559397 SYNJ2O15056 1496 aa27.21■■□□□ 1.95
TPM1-219ENST00000559397 PRXQ9BXM0 1461 aa27.2■■□□□ 1.94
TPM1-219ENST00000559397 CHD1O14646 1710 aa27.13■■□□□ 1.93
TPM1-219ENST00000559397 CHMP7Q8WUX9 453 aaPredicted RBP27.13■■□□□ 1.93
TPM1-219ENST00000559397 RAPGEF2Q9Y4G8 1499 aa27.13■■□□□ 1.93
TPM1-219ENST00000559397 GRIN2AQ12879 1464 aa27.11■■□□□ 1.93
TPM1-219ENST00000559397 FBLN2P98095 1184 aa27.1■■□□□ 1.93
TPM1-219ENST00000559397 KIF21BO75037 1637 aa27.1■■□□□ 1.93
TPM1-219ENST00000559397 NUP160Q12769 1436 aa26.98■■□□□ 1.91
TPM1-219ENST00000559397 CEP170Q5SW79 1584 aa26.97■■□□□ 1.91
TPM1-219ENST00000559397 GOLGA3Q08378 1498 aa26.96■■□□□ 1.91
TPM1-219ENST00000559397 OSCARQ8IYS5 282 aa26.92■■□□□ 1.9
TPM1-219ENST00000559397 EHMT2Q96KQ7 1210 aa26.92■■□□□ 1.9
TPM1-219ENST00000559397 CLASP1Q7Z460 1538 aa26.86■■□□□ 1.89
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms