RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 CC2D1BQ5T0F9 858 aaKnown RBP15.09■□□□□ 0.01
LDLR-208ENST00000558518 CDCA7LQ96GN5 454 aa15.09■□□□□ 0.01
LDLR-208ENST00000558518 BRPF3Q9ULD4 1205 aa15.09■□□□□ 0.01
LDLR-208ENST00000558518 RGL3Q3MIN7 710 aa15.09■□□□□ 0.01
LDLR-208ENST00000558518 CASKIN1Q8WXD9 1431 aa15.08■□□□□ 0
LDLR-208ENST00000558518 RCAN3Q9UKA8 241 aa15.08■□□□□ 0
LDLR-208ENST00000558518 MYOM3Q5VTT5 1437 aa15.07■□□□□ 0
LDLR-208ENST00000558518 RGS3P49796 1198 aa15.06■□□□□ 0
LDLR-208ENST00000558518 PTPN23Q9H3S7 1636 aa15.06■□□□□ 0
LDLR-208ENST00000558518 CADPSQ9ULU8 1353 aa15.06■□□□□ 0
LDLR-208ENST00000558518 PKD2Q13563 968 aa15.05■□□□□ -0
LDLR-208ENST00000558518 RRP1P56182 461 aaKnown RBP15.04■□□□□ -0
LDLR-208ENST00000558518 FYCO1Q9BQS8 1478 aa15.04■□□□□ -0
LDLR-208ENST00000558518 ST20-MTHFSA0A0A6YYL1 179 aa15.03■□□□□ -0
LDLR-208ENST00000558518 MAP3K1Q13233 1512 aa15.03■□□□□ -0
LDLR-208ENST00000558518 DCAF11Q8TEB1 546 aa15.03■□□□□ -0
LDLR-208ENST00000558518 PNISRQ8TF01 805 aaKnown RBP15.02□□□□□ -0.01
LDLR-208ENST00000558518 USP47Q96K76 1375 aa15.02□□□□□ -0.01
LDLR-208ENST00000558518 NCOA1Q15788 1441 aa15.01□□□□□ -0.01
LDLR-208ENST00000558518 NCAPD3P42695 1498 aa15.01□□□□□ -0.01
LDLR-208ENST00000558518 FBLN2P98095 1184 aa15□□□□□ -0.01
LDLR-208ENST00000558518 CRBNQ96SW2 442 aa14.99□□□□□ -0.01
LDLR-208ENST00000558518 SMG6Q86US8 1419 aaKnown RBP14.99□□□□□ -0.01
LDLR-208ENST00000558518 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.98□□□□□ -0.017e-10■■□□□ 13.2
LDLR-208ENST00000558518 TCERG1O14776 1098 aaKnown RBP14.98□□□□□ -0.01
LDLR-208ENST00000558518 CFDP1Q9UEE9 299 aaPredicted RBP14.97□□□□□ -0.01
LDLR-208ENST00000558518 FANCD2Q9BXW9 1451 aa14.96□□□□□ -0.02
LDLR-208ENST00000558518 PPM1GO15355 546 aaPredicted RBP14.95□□□□□ -0.02
LDLR-208ENST00000558518 BACH2Q9BYV9 841 aa14.94□□□□□ -0.02
LDLR-208ENST00000558518 CFAP43Q8NDM7 1665 aa14.94□□□□□ -0.02
LDLR-208ENST00000558518 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP14.94□□□□□ -0.02
LDLR-208ENST00000558518 KDM6BO15054 1643 aa14.94□□□□□ -0.02
LDLR-208ENST00000558518 C20orf194Q5TEA3 1177 aa14.94□□□□□ -0.02
LDLR-208ENST00000558518 NESP48681 1621 aa14.93□□□□□ -0.02
LDLR-208ENST00000558518 NFKBIBQ15653 356 aa14.92□□□□□ -0.02
LDLR-208ENST00000558518 FRAT1Q92837 279 aaPredicted RBP14.92□□□□□ -0.02
LDLR-208ENST00000558518 KDM5BQ9UGL1 1544 aa14.91□□□□□ -0.02
LDLR-208ENST00000558518 ANKRD30BQ9BXX2 1392 aa14.9□□□□□ -0.02
LDLR-208ENST00000558518 GSE1Q14687 1217 aa14.9□□□□□ -0.02
LDLR-208ENST00000558518 CDK13Q14004 1512 aaKnown RBP14.9□□□□□ -0.02
LDLR-208ENST00000558518 SPRYD3Q8NCJ5 442 aa14.89□□□□□ -0.03
LDLR-208ENST00000558518 POLA1P09884 1462 aaPredicted RBP14.88□□□□□ -0.03
LDLR-208ENST00000558518 SLKQ9H2G2 1235 aaPredicted RBP14.88□□□□□ -0.03
LDLR-208ENST00000558518 MYBBP1AQ9BQG0 1328 aaKnown RBP14.88□□□□□ -0.03
LDLR-208ENST00000558518 FRAT2O75474 233 aaPredicted RBP14.88□□□□□ -0.03
LDLR-208ENST00000558518 DENND4BO75064 1496 aaPredicted RBP14.88□□□□□ -0.03
LDLR-208ENST00000558518 DHX29Q7Z478 1369 aaKnown RBP14.88□□□□□ -0.03
LDLR-208ENST00000558518 DDRGK1Q96HY6 314 aa14.87□□□□□ -0.03
LDLR-208ENST00000558518 HMGXB3Q12766 1538 aa14.87□□□□□ -0.03
LDLR-208ENST00000558518 SNAPC4Q5SXM2 1469 aa14.86□□□□□ -0.03
LDLR-208ENST00000558518 CCDC146Q8IYE0 955 aa14.85□□□□□ -0.03
LDLR-208ENST00000558518 NUP155O75694 1391 aa14.85□□□□□ -0.03
LDLR-208ENST00000558518 CANXP27824 592 aaKnown RBP14.85□□□□□ -0.03
LDLR-208ENST00000558518 KIF15Q9NS87 1388 aa14.84□□□□□ -0.03
LDLR-208ENST00000558518 NBPF1Q3BBV0 1214 aa14.84□□□□□ -0.03
LDLR-208ENST00000558518 NLRP13Q86W25 1043 aa14.84□□□□□ -0.03
LDLR-208ENST00000558518 WDR43Q15061 677 aaKnown RBP eCLIP14.83□□□□□ -0.04
LDLR-208ENST00000558518 SUPT6HQ7KZ85 1726 aaKnown RBP14.83□□□□□ -0.04
LDLR-208ENST00000558518 ROCK2O75116 1388 aaKnown RBP14.83□□□□□ -0.04
LDLR-208ENST00000558518 NEUROD2Q15784 382 aa14.83□□□□□ -0.04
LDLR-208ENST00000558518 EFCAB5A4FU69 1503 aa14.83□□□□□ -0.04
LDLR-208ENST00000558518 DNAJC5BQ9UF47 199 aa14.82□□□□□ -0.04
LDLR-208ENST00000558518 RALBP1Q15311 655 aa14.82□□□□□ -0.04
LDLR-208ENST00000558518 MAGI3Q5TCQ9 1506 aa14.82□□□□□ -0.04
LDLR-208ENST00000558518 KTN1Q86UP2 1357 aaKnown RBP14.82□□□□□ -0.04
LDLR-208ENST00000558518 RPRD2Q5VT52 1461 aaKnown RBP14.82□□□□□ -0.04
LDLR-208ENST00000558518 PANK3Q9H999 370 aa14.81□□□□□ -0.04
LDLR-208ENST00000558518 RNF123Q5XPI4 1314 aa14.81□□□□□ -0.04
LDLR-208ENST00000558518 USP35Q9P2H5 1018 aa14.81□□□□□ -0.04
LDLR-208ENST00000558518 TSPY4P0CV99 314 aa14.8□□□□□ -0.04
LDLR-208ENST00000558518 TSPY10P0CW01 314 aa14.8□□□□□ -0.04
LDLR-208ENST00000558518 TOPBP1Q92547 1522 aa14.79□□□□□ -0.04
LDLR-208ENST00000558518 PDS5BQ9NTI5 1447 aa14.79□□□□□ -0.04
LDLR-208ENST00000558518 GZF1Q9H116 711 aaPredicted RBP14.79□□□□□ -0.04
LDLR-208ENST00000558518 ADAMTS8Q9UP79 889 aa14.79□□□□□ -0.04
LDLR-208ENST00000558518 HNRNPMP52272 730 aaKnown RBP eCLIP14.78□□□□□ -0.04
LDLR-208ENST00000558518 EHBP1L1Q8N3D4 1523 aa14.78□□□□□ -0.04
LDLR-208ENST00000558518 GAPVD1Q14C86 1478 aa14.78□□□□□ -0.04
LDLR-208ENST00000558518 MS4A1P11836 297 aa14.78□□□□□ -0.04
LDLR-208ENST00000558518 SENP3Q9H4L4 574 aaPredicted RBP14.78□□□□□ -0.04
LDLR-208ENST00000558518 SPATA31E1Q6ZUB1 1445 aa14.77□□□□□ -0.04
LDLR-208ENST00000558518 ARID4BQ4LE39 1312 aaPredicted RBP14.77□□□□□ -0.05
LDLR-208ENST00000558518 DAPK1P53355 1430 aa14.77□□□□□ -0.05
LDLR-208ENST00000558518 GRIN2BQ13224 1484 aa14.76□□□□□ -0.05
LDLR-208ENST00000558518 TNNT2P45379 298 aaPredicted RBP14.76□□□□□ -0.05
LDLR-208ENST00000558518 ABCC5O15440 1437 aa14.75□□□□□ -0.05
LDLR-208ENST00000558518 TEX14Q8IWB6 1497 aa14.75□□□□□ -0.05
LDLR-208ENST00000558518 UGGT2Q9NYU1 1516 aa14.75□□□□□ -0.05
LDLR-208ENST00000558518 BRD4O60885 1362 aaPredicted RBP14.74□□□□□ -0.05
LDLR-208ENST00000558518 EPRSP07814 1512 aaKnown RBP14.74□□□□□ -0.05
LDLR-208ENST00000558518 ABCA10Q8WWZ4 1543 aa14.74□□□□□ -0.05
LDLR-208ENST00000558518 FAM161AQ3B820 660 aa14.73□□□□□ -0.05
LDLR-208ENST00000558518 THOC2Q8NI27 1593 aaKnown RBP14.72□□□□□ -0.05
LDLR-208ENST00000558518 KNSTRNQ9Y448 316 aa14.72□□□□□ -0.05
LDLR-208ENST00000558518 POGKQ9P215 609 aa14.72□□□□□ -0.05
LDLR-208ENST00000558518 BCAR3O75815 825 aa14.72□□□□□ -0.05
LDLR-208ENST00000558518 PDE3BQ13370 1112 aa14.71□□□□□ -0.05
LDLR-208ENST00000558518 PRG4Q92954 1404 aaPredicted RBP14.71□□□□□ -0.05
LDLR-208ENST00000558518 BCL2L13Q9BXK5 485 aa14.71□□□□□ -0.05
LDLR-208ENST00000558518 PRDM2Q13029 1718 aa14.71□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 90.4 ms