RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 NISCHQ9Y2I1 1504 aa21.11■□□□□ 0.97
LDLR-208ENST00000558518 SHROOM4Q9ULL8 1493 aa19.59■□□□□ 0.73
LDLR-208ENST00000558518 SUPT5HO00267 1087 aaKnown RBP19.51■□□□□ 0.71
LDLR-208ENST00000558518 PCGF6Q9BYE7 350 aa19.02■□□□□ 0.63
LDLR-208ENST00000558518 DCAF8L2P0C7V8 631 aa18.98■□□□□ 0.63
LDLR-208ENST00000558518 PPARGC1BQ86YN6 1023 aaKnown RBP18.93■□□□□ 0.62
LDLR-208ENST00000558518 HRCP23327 699 aa18.85■□□□□ 0.61
LDLR-208ENST00000558518 CHIC1Q5VXU3 224 aa18.6■□□□□ 0.57
LDLR-208ENST00000558518 LOC105371045A0A1W2PR82 267 aa18.52■□□□□ 0.56
LDLR-208ENST00000558518 MYO15BQ96JP2 1530 aa18.51■□□□□ 0.55
LDLR-208ENST00000558518 EHMT2Q96KQ7 1210 aa18.49■□□□□ 0.55
LDLR-208ENST00000558518 FAM9AQ8IZU1 332 aaPredicted RBP18.21■□□□□ 0.51
LDLR-208ENST00000558518 TRIM26Q12899 539 aaPredicted RBP18.06■□□□□ 0.48
LDLR-208ENST00000558518 TTBK1Q5TCY1 1321 aaPredicted RBP17.93■□□□□ 0.46
LDLR-208ENST00000558518 SCAF1Q9H7N4 1312 aaKnown RBP17.86■□□□□ 0.45
LDLR-208ENST00000558518 ZCCHC6Q5VYS8 1495 aaKnown RBP17.82■□□□□ 0.44
LDLR-208ENST00000558518 TRIM41Q8WV44 630 aa17.81■□□□□ 0.44
LDLR-208ENST00000558518 DCAF1Q9Y4B6 1507 aa17.75■□□□□ 0.43
LDLR-208ENST00000558518 ZEB1P37275 1124 aaPredicted RBP17.72■□□□□ 0.43
LDLR-208ENST00000558518 PELP1Q8IZL8 1130 aaKnown RBP17.72■□□□□ 0.43
LDLR-208ENST00000558518 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.7■□□□□ 0.42
LDLR-208ENST00000558518 CCER1Q8TC90 406 aaPredicted RBP17.65■□□□□ 0.42
LDLR-208ENST00000558518 YTHDC1Q96MU7 727 aaKnown RBP17.57■□□□□ 0.4
LDLR-208ENST00000558518 NEUROD1Q13562 356 aa17.53■□□□□ 0.4
LDLR-208ENST00000558518 GTF3C3Q9Y5Q9 886 aa17.51■□□□□ 0.39
LDLR-208ENST00000558518 CCDC180Q9P1Z9 1646 aa17.44■□□□□ 0.38
LDLR-208ENST00000558518 ACIN1Q9UKV3 1341 aaKnown RBP17.43■□□□□ 0.38
LDLR-208ENST00000558518 DIEXFQ68CQ4 756 aaKnown RBP17.4■□□□□ 0.38
LDLR-208ENST00000558518 CENPBP07199 599 aaPredicted RBP17.38■□□□□ 0.37
LDLR-208ENST00000558518 RANGAP1P46060 587 aaPredicted RBP17.2■□□□□ 0.34
LDLR-208ENST00000558518 HNRNPUL2Q1KMD3 747 aaKnown RBP17.12■□□□□ 0.33
LDLR-208ENST00000558518 RSF1Q96T23 1441 aaPredicted RBP17.11■□□□□ 0.33
LDLR-208ENST00000558518 UBTFP17480 764 aaKnown RBP17.1■□□□□ 0.33
LDLR-208ENST00000558518 SCRIBQ14160 1630 aa17.08■□□□□ 0.32
LDLR-208ENST00000558518 RB1CC1Q8TDY2 1594 aa17.03■□□□□ 0.32
LDLR-208ENST00000558518 MIER1Q8N108 512 aa16.98■□□□□ 0.31
LDLR-208ENST00000558518 ZNF316A6NFI3 1004 aaPredicted RBP16.97■□□□□ 0.31
LDLR-208ENST00000558518 MYT1Q01538 1121 aa16.87■□□□□ 0.29
LDLR-208ENST00000558518 ABCC9O60706 1549 aa16.87■□□□□ 0.29
LDLR-208ENST00000558518 CECR2Q9BXF3 1484 aa16.83■□□□□ 0.28
LDLR-208ENST00000558518 APLP2Q06481 763 aa16.79■□□□□ 0.28
LDLR-208ENST00000558518 BCANQ96GW7 911 aa16.75■□□□□ 0.27
LDLR-208ENST00000558518 ITGAEP38570 1179 aa16.7■□□□□ 0.26
LDLR-208ENST00000558518 CEP162Q5TB80 1403 aa16.69■□□□□ 0.26
LDLR-208ENST00000558518 MROH2BQ7Z745 1585 aa16.66■□□□□ 0.26
LDLR-208ENST00000558518 CSRNP3Q8WYN3 585 aa16.65■□□□□ 0.26
LDLR-208ENST00000558518 SOGA1O94964 1423 aa16.64■□□□□ 0.25
LDLR-208ENST00000558518 ABCC8Q09428 1581 aa16.63■□□□□ 0.25
LDLR-208ENST00000558518 CCDC88BA6NC98 1476 aa16.6■□□□□ 0.25
LDLR-208ENST00000558518 WIZO95785 1651 aa16.59■□□□□ 0.25
LDLR-208ENST00000558518 RUSC2Q8N2Y8 1516 aa16.53■□□□□ 0.24
LDLR-208ENST00000558518 SUPT16HQ9Y5B9 1047 aaKnown RBP16.52■□□□□ 0.24
LDLR-208ENST00000558518 PABPN1Q86U42 306 aaKnown RBP eCLIP16.47■□□□□ 0.23
LDLR-208ENST00000558518 KCNH8Q96L42 1107 aa16.46■□□□□ 0.23
LDLR-208ENST00000558518 TNIKQ9UKE5 1360 aa16.43■□□□□ 0.22
LDLR-208ENST00000558518 HIRIP3Q9BW71 556 aaPredicted RBP16.41■□□□□ 0.22
LDLR-208ENST00000558518 FKBP8Q14318 412 aa16.39■□□□□ 0.21
LDLR-208ENST00000558518 TSHZ2Q9NRE2 1034 aa16.38■□□□□ 0.21
LDLR-208ENST00000558518 ATP1B4Q9UN42 357 aaPredicted RBP16.37■□□□□ 0.21
LDLR-208ENST00000558518 WRNQ14191 1432 aaPredicted RBP eCLIP16.35■□□□□ 0.21
LDLR-208ENST00000558518 CLIP1P30622 1438 aa16.33■□□□□ 0.2
LDLR-208ENST00000558518 DDX10Q13206 875 aaKnown RBP16.32■□□□□ 0.2
LDLR-208ENST00000558518 TRIM52Q96A61 297 aa16.32■□□□□ 0.2
LDLR-208ENST00000558518 ANP32EQ9BTT0 268 aa16.3■□□□□ 0.2
LDLR-208ENST00000558518 NEFLP07196 543 aa16.28■□□□□ 0.2
LDLR-208ENST00000558518 GOLGA3Q08378 1498 aa16.28■□□□□ 0.2
LDLR-208ENST00000558518 KANK4Q5T7N3 995 aaPredicted RBP16.24■□□□□ 0.19
LDLR-208ENST00000558518 BCL11AQ9H165 835 aa16.23■□□□□ 0.19
LDLR-208ENST00000558518 IRX6P78412 446 aaPredicted RBP16.22■□□□□ 0.19
LDLR-208ENST00000558518 FAM50AQ14320 339 aaKnown RBP16.18■□□□□ 0.18
LDLR-208ENST00000558518 CNGB1Q14028 1251 aaPredicted RBP16.17■□□□□ 0.18
LDLR-208ENST00000558518 BAZ1AQ9NRL2 1556 aaPredicted RBP16.17■□□□□ 0.18
LDLR-208ENST00000558518 ERICH6Q7L0X2 663 aa16.17■□□□□ 0.18
LDLR-208ENST00000558518 SIN3AQ96ST3 1273 aa16.16■□□□□ 0.18
LDLR-208ENST00000558518 DHX57Q6P158 1386 aaKnown RBP16.14■□□□□ 0.17
LDLR-208ENST00000558518 VPS8Q8N3P4 1428 aa16.11■□□□□ 0.17
LDLR-208ENST00000558518 P3H3Q8IVL6 736 aa16.11■□□□□ 0.17
LDLR-208ENST00000558518 RAPGEF2Q9Y4G8 1499 aa16.1■□□□□ 0.17
LDLR-208ENST00000558518 EEA1Q15075 1411 aa16.1■□□□□ 0.17
LDLR-208ENST00000558518 CEP164Q9UPV0 1460 aa16.09■□□□□ 0.17
LDLR-208ENST00000558518 RBM19Q9Y4C8 960 aaKnown RBP16.08■□□□□ 0.17
LDLR-208ENST00000558518 NACADO15069 1562 aa16.07■□□□□ 0.16
LDLR-208ENST00000558518 SMARCA2P51531 1590 aa16.05■□□□□ 0.16
LDLR-208ENST00000558518 TOP2AP11388 1531 aaKnown RBP16.05■□□□□ 0.16
LDLR-208ENST00000558518 CLSPNQ9HAW4 1339 aa16.05■□□□□ 0.16
LDLR-208ENST00000558518 EIF4G1Q04637 1599 aaKnown RBP16.04■□□□□ 0.16
LDLR-208ENST00000558518 ANP32CO43423 234 aa16.02■□□□□ 0.16
LDLR-208ENST00000558518 SENP3-EIF4A1A0A087X0R7 540 aa16■□□□□ 0.15
LDLR-208ENST00000558518 HNRNPUQ00839 825 aaKnown RBP eCLIP15.98■□□□□ 0.15
LDLR-208ENST00000558518 SMARCA4P51532 1647 aa15.93■□□□□ 0.14
LDLR-208ENST00000558518 RAB3GAP2Q9H2M9 1393 aa15.91■□□□□ 0.14
LDLR-208ENST00000558518 KIF21BO75037 1637 aa15.9■□□□□ 0.14
LDLR-208ENST00000558518 CCNB3Q8WWL7 1395 aa15.9■□□□□ 0.14
LDLR-208ENST00000558518 SYNJ1O43426 1573 aa15.9■□□□□ 0.14
LDLR-208ENST00000558518 CDK11AQ9UQ88 783 aaPredicted RBP15.9■□□□□ 0.14
LDLR-208ENST00000558518 POLR3GLQ9BT43 218 aa15.88■□□□□ 0.13
LDLR-208ENST00000558518 NBR1Q14596 966 aa15.87■□□□□ 0.13
LDLR-208ENST00000558518 MSH5O43196 834 aa15.85■□□□□ 0.13
LDLR-208ENST00000558518 FAM9BQ8IZU0 186 aa15.83■□□□□ 0.13
LDLR-208ENST00000558518 B4GALNT3Q6L9W6 998 aa15.79■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms