RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 KCNH8Q96L42 1107 aa18.22■□□□□ 0.51
VPS29-208ENST00000550267 CFAP43Q8NDM7 1665 aa18.21■□□□□ 0.51
VPS29-208ENST00000550267 ABCA8O94911 1581 aa18.2■□□□□ 0.5
VPS29-208ENST00000550267 CTTNBP2Q8WZ74 1663 aa18.18■□□□□ 0.5
VPS29-208ENST00000550267 KIF21BO75037 1637 aa18.17■□□□□ 0.5
VPS29-208ENST00000550267 GOLGA3Q08378 1498 aa18.17■□□□□ 0.5
VPS29-208ENST00000550267 ZNF692Q9BU19 519 aaPredicted RBP18.15■□□□□ 0.5
VPS29-208ENST00000550267 HAX1O00165 279 aa18.14■□□□□ 0.49
VPS29-208ENST00000550267 SSUH2Q9Y2M2 353 aa18.14■□□□□ 0.49
VPS29-208ENST00000550267 SPDYE1Q8NFV5 336 aaPredicted RBP18.13■□□□□ 0.49
VPS29-208ENST00000550267 ARAP3Q8WWN8 1544 aa18.09■□□□□ 0.49
VPS29-208ENST00000550267 ARID3CA6NKF2 412 aa18.09■□□□□ 0.49
VPS29-208ENST00000550267 FBXO41Q8TF61 875 aa18.07■□□□□ 0.48
VPS29-208ENST00000550267 CLEC11AQ9Y240 323 aa18.05■□□□□ 0.48
VPS29-208ENST00000550267 ATP10BO94823 1461 aa18.05■□□□□ 0.48
VPS29-208ENST00000550267 PRXQ9BXM0 1461 aa18.05■□□□□ 0.48
VPS29-208ENST00000550267 PTPRMP28827 1452 aa18.04■□□□□ 0.48
VPS29-208ENST00000550267 P3H3Q8IVL6 736 aa18.04■□□□□ 0.48
VPS29-208ENST00000550267 CSRNP3Q8WYN3 585 aa18.04■□□□□ 0.48
VPS29-208ENST00000550267 ADAMTSL3P82987 1691 aa18.03■□□□□ 0.48
VPS29-208ENST00000550267 ABCA9Q8IUA7 1624 aa18.01■□□□□ 0.47
VPS29-208ENST00000550267 RAPGEF3O95398 923 aa18.01■□□□□ 0.47
VPS29-208ENST00000550267 PHLDB1Q86UU1 1377 aa18■□□□□ 0.47
VPS29-208ENST00000550267 FAM9AQ8IZU1 332 aaPredicted RBP17.98■□□□□ 0.47
VPS29-208ENST00000550267 PRKAR2AP13861 404 aaKnown RBP17.97■□□□□ 0.47
VPS29-208ENST00000550267 FRMPD1Q5SYB0 1578 aa17.96■□□□□ 0.46
VPS29-208ENST00000550267 NEO1Q92859 1461 aa17.95■□□□□ 0.46
VPS29-208ENST00000550267 BCORL1Q5H9F3 1711 aa17.95■□□□□ 0.46
VPS29-208ENST00000550267 ARID4BQ4LE39 1312 aaPredicted RBP17.95■□□□□ 0.46
VPS29-208ENST00000550267 MADDQ8WXG6 1647 aa17.94■□□□□ 0.46
VPS29-208ENST00000550267 PCF11O94913 1555 aaKnown RBP17.93■□□□□ 0.46
VPS29-208ENST00000550267 RAPGEF6Q8TEU7 1601 aa17.93■□□□□ 0.46
VPS29-208ENST00000550267 SAMD9Q5K651 1589 aa17.91■□□□□ 0.46
VPS29-208ENST00000550267 LMTK3Q96Q04 1460 aa17.91■□□□□ 0.46
VPS29-208ENST00000550267 EVX2Q03828 476 aa17.9■□□□□ 0.46
VPS29-208ENST00000550267 NUP153P49790 1475 aaKnown RBP17.87■□□□□ 0.45
VPS29-208ENST00000550267 ARHGEF40Q8TER5 1519 aa17.87■□□□□ 0.45
VPS29-208ENST00000550267 RIMS1Q86UR5 1692 aaKnown RBP17.87■□□□□ 0.45
VPS29-208ENST00000550267 DENND4BO75064 1496 aaPredicted RBP17.85■□□□□ 0.45
VPS29-208ENST00000550267 HSPA2P54652 639 aa17.83■□□□□ 0.44
VPS29-208ENST00000550267 AKNAQ7Z591 1439 aa17.82■□□□□ 0.44
VPS29-208ENST00000550267 RICTORQ6R327 1708 aa17.82■□□□□ 0.44
VPS29-208ENST00000550267 RANGAP1P46060 587 aaPredicted RBP17.82■□□□□ 0.44
VPS29-208ENST00000550267 FHOD3Q2V2M9 1422 aa17.81■□□□□ 0.44
VPS29-208ENST00000550267 PLEKHD1A6NEE1 506 aa17.79■□□□□ 0.44
VPS29-208ENST00000550267 FANCAO15360 1455 aa17.79■□□□□ 0.44
VPS29-208ENST00000550267 CFAP74Q9C0B2 1584 aa17.78■□□□□ 0.44
VPS29-208ENST00000550267 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.77■□□□□ 0.44
VPS29-208ENST00000550267 PRR29P0C7W0 189 aa17.77■□□□□ 0.44
VPS29-208ENST00000550267 POGZQ7Z3K3 1410 aa17.77■□□□□ 0.44
VPS29-208ENST00000550267 YEATS2Q9ULM3 1422 aa17.77■□□□□ 0.44
VPS29-208ENST00000550267 SIGLEC1Q9BZZ2 1709 aa17.77■□□□□ 0.44
VPS29-208ENST00000550267 ZMYM4Q5VZL5 1548 aa17.77■□□□□ 0.43
VPS29-208ENST00000550267 C19orf67A6NJJ6 358 aa17.76■□□□□ 0.43
VPS29-208ENST00000550267 ZFYVE16Q7Z3T8 1539 aa17.76■□□□□ 0.43
VPS29-208ENST00000550267 TTC37Q6PGP7 1564 aa17.75■□□□□ 0.43
VPS29-208ENST00000550267 EFCAB5A4FU69 1503 aa17.74■□□□□ 0.43
VPS29-208ENST00000550267 MLECQ14165 292 aa17.74■□□□□ 0.43
VPS29-208ENST00000550267 CERKQ8TCT0 537 aa17.72■□□□□ 0.43
VPS29-208ENST00000550267 HECW1Q76N89 1606 aa17.72■□□□□ 0.43
VPS29-208ENST00000550267 CHADLQ6NUI6 762 aa17.71■□□□□ 0.43
VPS29-208ENST00000550267 MAGI2Q86UL8 1455 aa17.7■□□□□ 0.42
VPS29-208ENST00000550267 FER1L4A9Z1Z3 1794 aa17.68■□□□□ 0.42
VPS29-208ENST00000550267 CDK13Q14004 1512 aaKnown RBP17.67■□□□□ 0.42
VPS29-208ENST00000550267 SCAPERQ9BY12 1400 aa17.67■□□□□ 0.42
VPS29-208ENST00000550267 EHMT2Q96KQ7 1210 aa17.66■□□□□ 0.42
VPS29-208ENST00000550267 PLCH2O75038 1416 aa17.64■□□□□ 0.42
VPS29-208ENST00000550267 EEA1Q15075 1411 aa17.64■□□□□ 0.42
VPS29-208ENST00000550267 ARHGEF12Q9NZN5 1544 aa17.64■□□□□ 0.41
VPS29-208ENST00000550267 ATP10AO60312 1499 aa17.63■□□□□ 0.41
VPS29-208ENST00000550267 C9orf84Q5VXU9 1444 aa17.62■□□□□ 0.41
VPS29-208ENST00000550267 CEBPAP49715 358 aaPredicted RBP17.61■□□□□ 0.41
VPS29-208ENST00000550267 PREX1Q8TCU6 1659 aa17.61■□□□□ 0.41
VPS29-208ENST00000550267 EFCAB2Q5VUJ9 269 aa17.58■□□□□ 0.4
VPS29-208ENST00000550267 ATP1B4Q9UN42 357 aaPredicted RBP17.57■□□□□ 0.4
VPS29-208ENST00000550267 MYO5CQ9NQX4 1742 aa17.55■□□□□ 0.4
VPS29-208ENST00000550267 DISP3Q9P2K9 1392 aa17.55■□□□□ 0.4
VPS29-208ENST00000550267 STRCQ7RTU9 1775 aa17.54■□□□□ 0.4
VPS29-208ENST00000550267 ILDR2Q71H61 639 aa17.54■□□□□ 0.4
VPS29-208ENST00000550267 UHRF1BP1Q6BDS2 1440 aa17.54■□□□□ 0.4
VPS29-208ENST00000550267 KIF14Q15058 1648 aa17.54■□□□□ 0.4
VPS29-208ENST00000550267 ZNF518AQ6AHZ1 1483 aa17.53■□□□□ 0.4
VPS29-208ENST00000550267 AFAP1Q8N556 730 aa17.53■□□□□ 0.4
VPS29-208ENST00000550267 GABBR2O75899 941 aa17.51■□□□□ 0.39
VPS29-208ENST00000550267 KDM5CP41229 1560 aa17.51■□□□□ 0.39
VPS29-208ENST00000550267 MYT1LQ9UL68 1186 aa17.51■□□□□ 0.39
VPS29-208ENST00000550267 ARHGAP5Q13017 1502 aa17.51■□□□□ 0.39
VPS29-208ENST00000550267 DIP2CQ9Y2E4 1556 aa17.49■□□□□ 0.39
VPS29-208ENST00000550267 FMN1Q68DA7 1419 aa17.49■□□□□ 0.39
VPS29-208ENST00000550267 CDK11AQ9UQ88 783 aaPredicted RBP17.49■□□□□ 0.39
VPS29-208ENST00000550267 FARP1Q9Y4F1 1045 aaPredicted RBP17.48■□□□□ 0.39
VPS29-208ENST00000550267 TROQ12816 1431 aaPredicted RBP17.47■□□□□ 0.39
VPS29-208ENST00000550267 SOCS7O14512 581 aa17.47■□□□□ 0.39
VPS29-208ENST00000550267 ARHGAP35Q9NRY4 1499 aa17.47■□□□□ 0.39
VPS29-208ENST00000550267 REREQ9P2R6 1566 aa17.46■□□□□ 0.39
VPS29-208ENST00000550267 ABCA6Q8N139 1617 aa17.46■□□□□ 0.39
VPS29-208ENST00000550267 PTPRTO14522 1441 aa17.46■□□□□ 0.39
VPS29-208ENST00000550267 C3P01024 1663 aa17.45■□□□□ 0.38
VPS29-208ENST00000550267 UBTFP17480 764 aaKnown RBP17.44■□□□□ 0.38
VPS29-208ENST00000550267 CLIP1P30622 1438 aa17.44■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms