RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 AEBP2Q6ZN18 517 aaPredicted RBP33.98■■■■□ 3.03
VPS29-208ENST00000550267 CHIC1Q5VXU3 224 aa32.18■■■□□ 2.74
VPS29-208ENST00000550267 SENP3Q9H4L4 574 aaPredicted RBP29.06■■■□□ 2.24
VPS29-208ENST00000550267 PHF23Q9BUL5 403 aaPredicted RBP28.64■■■□□ 2.18
VPS29-208ENST00000550267 FOXD1Q16676 465 aa27.07■■□□□ 1.92
VPS29-208ENST00000550267 NISCHQ9Y2I1 1504 aa26.79■■□□□ 1.88
VPS29-208ENST00000550267 PLPPR3Q6T4P5 718 aa25.66■■□□□ 1.7
VPS29-208ENST00000550267 MSH5O43196 834 aa25.42■■□□□ 1.66
VPS29-208ENST00000550267 PIAS4Q8N2W9 510 aaPredicted RBP25.25■■□□□ 1.63
VPS29-208ENST00000550267 PPP6R1Q9UPN7 881 aa25.2■■□□□ 1.62
VPS29-208ENST00000550267 ADRA2BP18089 450 aa25.1■■□□□ 1.61
VPS29-208ENST00000550267 POTEDQ86YR6 584 aa25■■□□□ 1.59
VPS29-208ENST00000550267 ABCC9O60706 1549 aa24.56■■□□□ 1.52
VPS29-208ENST00000550267 CCDC180Q9P1Z9 1646 aa24.16■■□□□ 1.46
VPS29-208ENST00000550267 DNAJC5BQ9UF47 199 aa23.36■■□□□ 1.33
VPS29-208ENST00000550267 RB1CC1Q8TDY2 1594 aa23.18■■□□□ 1.3
VPS29-208ENST00000550267 MAPK8IP2Q13387 824 aaPredicted RBP23.08■■□□□ 1.29
VPS29-208ENST00000550267 SCAF1Q9H7N4 1312 aaKnown RBP23.03■■□□□ 1.28
VPS29-208ENST00000550267 DMRT2Q9Y5R5 561 aa23.02■■□□□ 1.28
VPS29-208ENST00000550267 NACADO15069 1562 aa22.93■■□□□ 1.26
VPS29-208ENST00000550267 PABPN1Q86U42 306 aaKnown RBP eCLIP22.82■■□□□ 1.24
VPS29-208ENST00000550267 DCAF8L2P0C7V8 631 aa22.79■■□□□ 1.24
VPS29-208ENST00000550267 UNC13AQ9UPW8 1703 aa22.64■■□□□ 1.21
VPS29-208ENST00000550267 BICRAQ9NZM4 1560 aa22.55■■□□□ 1.2
VPS29-208ENST00000550267 MYO15BQ96JP2 1530 aa22.48■■□□□ 1.19
VPS29-208ENST00000550267 PPP4R3CPQ6ZMV5 832 aa22.46■■□□□ 1.19
VPS29-208ENST00000550267 SHROOM4Q9ULL8 1493 aa22.15■■□□□ 1.14
VPS29-208ENST00000550267 CC2D2AQ9P2K1 1620 aa22.14■■□□□ 1.14
VPS29-208ENST00000550267 CECR2Q9BXF3 1484 aa22.14■■□□□ 1.13
VPS29-208ENST00000550267 HOXD11P31277 338 aaPredicted RBP22.13■■□□□ 1.13
VPS29-208ENST00000550267 ZCCHC6Q5VYS8 1495 aaKnown RBP22.13■■□□□ 1.13
VPS29-208ENST00000550267 CNKSR2Q8WXI2 1034 aa22.09■■□□□ 1.13
VPS29-208ENST00000550267 DCAF1Q9Y4B6 1507 aa22.08■■□□□ 1.13
VPS29-208ENST00000550267 SCRIBQ14160 1630 aa22.04■■□□□ 1.12
VPS29-208ENST00000550267 EIF4G1Q04637 1599 aaKnown RBP22.01■■□□□ 1.11
VPS29-208ENST00000550267 DCAF8L1A6NGE4 600 aa22.01■■□□□ 1.11
VPS29-208ENST00000550267 RNF216Q9NWF9 866 aaPredicted RBP21.93■■□□□ 1.1
VPS29-208ENST00000550267 CACNB1Q02641 598 aaPredicted RBP21.85■■□□□ 1.09
VPS29-208ENST00000550267 RNF39Q9H2S5 420 aa21.67■■□□□ 1.06
VPS29-208ENST00000550267 DNAJC5Q9H3Z4 198 aa21.67■■□□□ 1.06
VPS29-208ENST00000550267 NCBP3Q53F19 620 aaKnown RBP21.59■■□□□ 1.05
VPS29-208ENST00000550267 C1QBPQ07021 282 aaKnown RBP21.37■■□□□ 1.01
VPS29-208ENST00000550267 CUX2O14529 1486 aa21.26■□□□□ 0.99
VPS29-208ENST00000550267 NPM3O75607 178 aaKnown RBP21.24■□□□□ 0.99
VPS29-208ENST00000550267 ERCC6Q03468 1493 aa21.2■□□□□ 0.98
VPS29-208ENST00000550267 NCAPD3P42695 1498 aa21.19■□□□□ 0.98
VPS29-208ENST00000550267 ATAD2BQ9ULI0 1458 aa21.08■□□□□ 0.97
VPS29-208ENST00000550267 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.05■□□□□ 0.96
VPS29-208ENST00000550267 NESP48681 1621 aa21■□□□□ 0.95
VPS29-208ENST00000550267 HMGXB3Q12766 1538 aa20.99■□□□□ 0.95
VPS29-208ENST00000550267 SMARCA2P51531 1590 aa20.98■□□□□ 0.95
VPS29-208ENST00000550267 SMARCA4P51532 1647 aa20.96■□□□□ 0.95
VPS29-208ENST00000550267 BAZ1BQ9UIG0 1483 aaKnown RBP20.86■□□□□ 0.93
VPS29-208ENST00000550267 THOC2Q8NI27 1593 aaKnown RBP20.84■□□□□ 0.93
VPS29-208ENST00000550267 BAZ1AQ9NRL2 1556 aaPredicted RBP20.8■□□□□ 0.92
VPS29-208ENST00000550267 LAMC3Q9Y6N6 1575 aa20.76■□□□□ 0.91
VPS29-208ENST00000550267 PEG3Q9GZU2 1588 aa20.75■□□□□ 0.91
VPS29-208ENST00000550267 KCNA4P22459 653 aa20.69■□□□□ 0.9
VPS29-208ENST00000550267 KIF21AQ7Z4S6 1674 aa20.69■□□□□ 0.9
VPS29-208ENST00000550267 MROH2BQ7Z745 1585 aa20.66■□□□□ 0.9
VPS29-208ENST00000550267 PDS5BQ9NTI5 1447 aa20.65■□□□□ 0.9
VPS29-208ENST00000550267 TRIM41Q8WV44 630 aa20.62■□□□□ 0.89
VPS29-208ENST00000550267 U3KPZ7 1027 aaPredicted RBP20.59■□□□□ 0.89
VPS29-208ENST00000550267 CADPSQ9ULU8 1353 aa20.53■□□□□ 0.88
VPS29-208ENST00000550267 MRC2Q9UBG0 1479 aa20.51■□□□□ 0.87
VPS29-208ENST00000550267 WDR62O43379 1518 aa20.47■□□□□ 0.87
VPS29-208ENST00000550267 WIZO95785 1651 aa20.38■□□□□ 0.85
VPS29-208ENST00000550267 CEP164Q9UPV0 1460 aa20.36■□□□□ 0.85
VPS29-208ENST00000550267 SLC4A2P04920 1241 aa20.32■□□□□ 0.84
VPS29-208ENST00000550267 SPINK5Q9NQ38 1064 aaPredicted RBP20.32■□□□□ 0.84
VPS29-208ENST00000550267 FANCD2Q9BXW9 1451 aa20.3■□□□□ 0.84
VPS29-208ENST00000550267 CAPN15O75808 1086 aa20.3■□□□□ 0.84
VPS29-208ENST00000550267 DSG3P32926 999 aa20.24■□□□□ 0.83
VPS29-208ENST00000550267 OSCARQ8IYS5 282 aa20.24■□□□□ 0.83
VPS29-208ENST00000550267 CFTRP13569 1480 aa20.22■□□□□ 0.83
VPS29-208ENST00000550267 URB2Q14146 1524 aaKnown RBP20.17■□□□□ 0.82
VPS29-208ENST00000550267 TOP2AP11388 1531 aaKnown RBP20.1■□□□□ 0.81
VPS29-208ENST00000550267 RSF1Q96T23 1441 aaPredicted RBP20.1■□□□□ 0.81
VPS29-208ENST00000550267 APLP2Q06481 763 aa20.06■□□□□ 0.8
VPS29-208ENST00000550267 RIMBP3CA6NJZ7 1639 aa20.04■□□□□ 0.8
VPS29-208ENST00000550267 RIMBP3BA6NNM3 1639 aa20.04■□□□□ 0.8
VPS29-208ENST00000550267 RIMBP3Q9UFD9 1639 aa20.04■□□□□ 0.8
VPS29-208ENST00000550267 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.01■□□□□ 0.79
VPS29-208ENST00000550267 HNRNPUL2Q1KMD3 747 aaKnown RBP20.01■□□□□ 0.79
VPS29-208ENST00000550267 ZNF608Q9ULD9 1512 aaPredicted RBP19.99■□□□□ 0.79
VPS29-208ENST00000550267 IFT140Q96RY7 1462 aa19.96■□□□□ 0.79
VPS29-208ENST00000550267 PRDM2Q13029 1718 aa19.95■□□□□ 0.78
VPS29-208ENST00000550267 ARHGEF11O15085 1522 aa19.94■□□□□ 0.78
VPS29-208ENST00000550267 ZNF219Q9P2Y4 722 aaPredicted RBP19.94■□□□□ 0.78
VPS29-208ENST00000550267 TRHP20396 242 aaPredicted RBP19.92■□□□□ 0.78
VPS29-208ENST00000550267 TOPBP1Q92547 1522 aa19.88■□□□□ 0.77
VPS29-208ENST00000550267 CCDC88BA6NC98 1476 aa19.88■□□□□ 0.77
VPS29-208ENST00000550267 SAMD1Q6SPF0 538 aaPredicted RBP19.88■□□□□ 0.77
VPS29-208ENST00000550267 EIF4G3O43432 1585 aaKnown RBP19.85■□□□□ 0.77
VPS29-208ENST00000550267 CYB5RLQ6IPT4 315 aa19.82■□□□□ 0.76
VPS29-208ENST00000550267 ABCC8Q09428 1581 aa19.78■□□□□ 0.76
VPS29-208ENST00000550267 ABCB7O75027 752 aa19.78■□□□□ 0.76
VPS29-208ENST00000550267 DNMBPQ6XZF7 1577 aa19.77■□□□□ 0.76
VPS29-208ENST00000550267 AQRO60306 1485 aaKnown RBP eCLIP19.76■□□□□ 0.752e-9■■■■■ 38.2
VPS29-208ENST00000550267 CHD1O14646 1710 aa19.75■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms