RNA–Protein interactions for RNA: ENST00000540021.5

MSH6-210, Transcript of mutS homolog 6, humanhuman

TSL 2 BASIC

Gene MSH6, Length 3,930 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-210ENST00000540021 MYOM3Q5VTT5 1437 aa17.11■□□□□ 0.33
MSH6-210ENST00000540021 CASKIN1Q8WXD9 1431 aa17.1■□□□□ 0.33
MSH6-210ENST00000540021 CFTRP13569 1480 aa17.1■□□□□ 0.33
MSH6-210ENST00000540021 PPM1GO15355 546 aaPredicted RBP17.1■□□□□ 0.33
MSH6-210ENST00000540021 WDR43Q15061 677 aaKnown RBP eCLIP17.1■□□□□ 0.332e-9■□□□□ 9.3
MSH6-210ENST00000540021 PCF11O94913 1555 aaKnown RBP17.1■□□□□ 0.33
MSH6-210ENST00000540021 NCOA2Q15596 1464 aa17.1■□□□□ 0.33
MSH6-210ENST00000540021 HFM1A2PYH4 1435 aa17.09■□□□□ 0.33
MSH6-210ENST00000540021 NAIPQ13075 1403 aa17.08■□□□□ 0.33
MSH6-210ENST00000540021 PDE4AP27815 886 aa17.08■□□□□ 0.32
MSH6-210ENST00000540021 ST20-MTHFSA0A0A6YYL1 179 aa17.08■□□□□ 0.32
MSH6-210ENST00000540021 NCAPD3P42695 1498 aa17.07■□□□□ 0.32
MSH6-210ENST00000540021 DDRGK1Q96HY6 314 aa17.07■□□□□ 0.32
MSH6-210ENST00000540021 IL27Q8NEV9 243 aa17.06■□□□□ 0.32
MSH6-210ENST00000540021 TCERG1O14776 1098 aaKnown RBP17.06■□□□□ 0.32
MSH6-210ENST00000540021 PTPRKQ15262 1439 aa17.05■□□□□ 0.32
MSH6-210ENST00000540021 USP47Q96K76 1375 aa17.05■□□□□ 0.32
MSH6-210ENST00000540021 BIVM-ERCC5R4GMW8 1640 aa17.05■□□□□ 0.32
MSH6-210ENST00000540021 ANO8Q9HCE9 1232 aaPredicted RBP17.05■□□□□ 0.32
MSH6-210ENST00000540021 FYCO1Q9BQS8 1478 aa17.05■□□□□ 0.32
MSH6-210ENST00000540021 RRP1P56182 461 aaKnown RBP17.04■□□□□ 0.32
MSH6-210ENST00000540021 FANCD2Q9BXW9 1451 aa17.04■□□□□ 0.32
MSH6-210ENST00000540021 AQRO60306 1485 aaKnown RBP eCLIP17.02■□□□□ 0.328e-7■■■■□ 22.6
MSH6-210ENST00000540021 SKAP1Q86WV1 359 aa17.02■□□□□ 0.31
MSH6-210ENST00000540021 GOLGA6L2Q8N9W4 650 aaPredicted RBP17■□□□□ 0.31
MSH6-210ENST00000540021 CDCA7LQ96GN5 454 aa16.99■□□□□ 0.31
MSH6-210ENST00000540021 NUP155O75694 1391 aa16.99■□□□□ 0.31
MSH6-210ENST00000540021 CHMP7Q8WUX9 453 aaPredicted RBP16.98■□□□□ 0.31
MSH6-210ENST00000540021 PLEKHD1A6NEE1 506 aa16.97■□□□□ 0.31
MSH6-210ENST00000540021 CRBNQ96SW2 442 aa16.97■□□□□ 0.31
MSH6-210ENST00000540021 MAP3K1Q13233 1512 aa16.97■□□□□ 0.31
MSH6-210ENST00000540021 NEUROD2Q15784 382 aa16.96■□□□□ 0.31
MSH6-210ENST00000540021 RALBP1Q15311 655 aa16.96■□□□□ 0.31
MSH6-210ENST00000540021 KTN1Q86UP2 1357 aaKnown RBP16.96■□□□□ 0.3
MSH6-210ENST00000540021 MYBBP1AQ9BQG0 1328 aaKnown RBP16.95■□□□□ 0.3
MSH6-210ENST00000540021 NLRP13Q86W25 1043 aa16.95■□□□□ 0.3
MSH6-210ENST00000540021 PNISRQ8TF01 805 aaKnown RBP16.95■□□□□ 0.3
MSH6-210ENST00000540021 KNSTRNQ9Y448 316 aa16.95■□□□□ 0.3
MSH6-210ENST00000540021 ROCK2O75116 1388 aaKnown RBP16.95■□□□□ 0.3
MSH6-210ENST00000540021 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.94■□□□□ 0.34e-9■■■□□ 16.4
MSH6-210ENST00000540021 KIF15Q9NS87 1388 aa16.92■□□□□ 0.3
MSH6-210ENST00000540021 FRAT1Q92837 279 aaPredicted RBP16.91■□□□□ 0.3
MSH6-210ENST00000540021 SMG6Q86US8 1419 aaKnown RBP16.91■□□□□ 0.3
MSH6-210ENST00000540021 PTPN23Q9H3S7 1636 aa16.91■□□□□ 0.3
MSH6-210ENST00000540021 UPF2Q9HAU5 1272 aaKnown RBP16.9■□□□□ 0.3
MSH6-210ENST00000540021 SPRYD3Q8NCJ5 442 aa16.89■□□□□ 0.29
MSH6-210ENST00000540021 SENP3Q9H4L4 574 aaPredicted RBP16.89■□□□□ 0.29
MSH6-210ENST00000540021 SLKQ9H2G2 1235 aaPredicted RBP16.89■□□□□ 0.29
MSH6-210ENST00000540021 NCOA1Q15788 1441 aa16.88■□□□□ 0.29
MSH6-210ENST00000540021 TNNT2P45379 298 aaPredicted RBP16.88■□□□□ 0.29
MSH6-210ENST00000540021 BRPF3Q9ULD4 1205 aa16.88■□□□□ 0.29
MSH6-210ENST00000540021 CHGAP10645 457 aaKnown RBP16.87■□□□□ 0.29
MSH6-210ENST00000540021 CCDC146Q8IYE0 955 aa16.87■□□□□ 0.29
MSH6-210ENST00000540021 HNRNPMP52272 730 aaKnown RBP eCLIP16.87■□□□□ 0.29
MSH6-210ENST00000540021 NESP48681 1621 aa16.87■□□□□ 0.29
MSH6-210ENST00000540021 PANK3Q9H999 370 aa16.86■□□□□ 0.29
MSH6-210ENST00000540021 POLA1P09884 1462 aaPredicted RBP16.86■□□□□ 0.29
MSH6-210ENST00000540021 HMGXB3Q12766 1538 aa16.85■□□□□ 0.29
MSH6-210ENST00000540021 GAPVD1Q14C86 1478 aa16.85■□□□□ 0.29
MSH6-210ENST00000540021 EFCAB5A4FU69 1503 aa16.85■□□□□ 0.29
MSH6-210ENST00000540021 TMF1P82094 1093 aa16.85■□□□□ 0.29
MSH6-210ENST00000540021 GSE1Q14687 1217 aa16.85■□□□□ 0.29
MSH6-210ENST00000540021 ANKRD30AQ9BXX3 1397 aa16.84■□□□□ 0.29
MSH6-210ENST00000540021 BACH2Q9BYV9 841 aa16.84■□□□□ 0.29
MSH6-210ENST00000540021 PDE3BQ13370 1112 aa16.84■□□□□ 0.29
MSH6-210ENST00000540021 USP35Q9P2H5 1018 aa16.83■□□□□ 0.29
MSH6-210ENST00000540021 NFKBIBQ15653 356 aa16.82■□□□□ 0.28
MSH6-210ENST00000540021 ANKRD30BQ9BXX2 1392 aa16.82■□□□□ 0.28
MSH6-210ENST00000540021 BECN1Q14457 450 aa16.81■□□□□ 0.28
MSH6-210ENST00000540021 MS4A1P11836 297 aa16.8■□□□□ 0.28
MSH6-210ENST00000540021 CDK13Q14004 1512 aaKnown RBP16.8■□□□□ 0.28
MSH6-210ENST00000540021 EHBP1L1Q8N3D4 1523 aa16.78■□□□□ 0.28
MSH6-210ENST00000540021 TOPBP1Q92547 1522 aa16.78■□□□□ 0.28
MSH6-210ENST00000540021 PDS5BQ9NTI5 1447 aa16.78■□□□□ 0.28
MSH6-210ENST00000540021 SUPT6HQ7KZ85 1726 aaKnown RBP16.78■□□□□ 0.28
MSH6-210ENST00000540021 HSP90AA1P07900 732 aaKnown RBP16.77■□□□□ 0.28
MSH6-210ENST00000540021 PRKCSHP14314 528 aaPredicted RBP16.77■□□□□ 0.28
MSH6-210ENST00000540021 NBPF1Q3BBV0 1214 aa16.77■□□□□ 0.28
MSH6-210ENST00000540021 GZF1Q9H116 711 aaPredicted RBP16.77■□□□□ 0.28
MSH6-210ENST00000540021 GOLGA2Q08379 1002 aa16.77■□□□□ 0.28
MSH6-210ENST00000540021 FAM161AQ3B820 660 aa16.76■□□□□ 0.27
MSH6-210ENST00000540021 C20orf194Q5TEA3 1177 aa16.76■□□□□ 0.27
MSH6-210ENST00000540021 BRD4O60885 1362 aaPredicted RBP16.75■□□□□ 0.27
MSH6-210ENST00000540021 ADAMTS8Q9UP79 889 aa16.75■□□□□ 0.27
MSH6-210ENST00000540021 FRAT2O75474 233 aaPredicted RBP16.74■□□□□ 0.27
MSH6-210ENST00000540021 CENPQQ7L2Z9 268 aaPredicted RBP16.73■□□□□ 0.27
MSH6-210ENST00000540021 DAPK1P53355 1430 aa16.73■□□□□ 0.27
MSH6-210ENST00000540021 CFAP43Q8NDM7 1665 aa16.73■□□□□ 0.27
MSH6-210ENST00000540021 CLUAP1Q96AJ1 413 aa16.72■□□□□ 0.27
MSH6-210ENST00000540021 RPRD2Q5VT52 1461 aaKnown RBP16.72■□□□□ 0.27
MSH6-210ENST00000540021 NAP1L5Q96NT1 182 aaPredicted RBP16.71■□□□□ 0.27
MSH6-210ENST00000540021 ABCA10Q8WWZ4 1543 aa16.7■□□□□ 0.26
MSH6-210ENST00000540021 ANKRD50Q9ULJ7 1429 aa16.7■□□□□ 0.26
MSH6-210ENST00000540021 APAF1O14727 1248 aa16.7■□□□□ 0.26
MSH6-210ENST00000540021 BCL2L13Q9BXK5 485 aa16.7■□□□□ 0.26
MSH6-210ENST00000540021 ARID4BQ4LE39 1312 aaPredicted RBP16.69■□□□□ 0.26
MSH6-210ENST00000540021 EPRSP07814 1512 aaKnown RBP16.69■□□□□ 0.26
MSH6-210ENST00000540021 PRDM2Q13029 1718 aa16.68■□□□□ 0.26
MSH6-210ENST00000540021 RRP7AQ9Y3A4 280 aaKnown RBP16.68■□□□□ 0.26
MSH6-210ENST00000540021 MIA2Q96PC5 1412 aa16.68■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms