RNA–Protein interactions for RNA: ENST00000540021.5

MSH6-210, Transcript of mutS homolog 6, humanhuman

TSL 2 BASIC

Gene MSH6, Length 3,930 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-210ENST00000540021 NISCHQ9Y2I1 1504 aa23.83■■□□□ 1.4
MSH6-210ENST00000540021 SUPT5HO00267 1087 aaKnown RBP22.17■■□□□ 1.14
MSH6-210ENST00000540021 SHROOM4Q9ULL8 1493 aa22.16■■□□□ 1.14
MSH6-210ENST00000540021 DCAF8L2P0C7V8 631 aa21.89■■□□□ 1.09
MSH6-210ENST00000540021 PCGF6Q9BYE7 350 aa21.42■■□□□ 1.02
MSH6-210ENST00000540021 HRCP23327 699 aa21.1■□□□□ 0.97
MSH6-210ENST00000540021 PPARGC1BQ86YN6 1023 aaKnown RBP21.01■□□□□ 0.95
MSH6-210ENST00000540021 EHMT2Q96KQ7 1210 aa21■□□□□ 0.95
MSH6-210ENST00000540021 CHIC1Q5VXU3 224 aa20.91■□□□□ 0.94
MSH6-210ENST00000540021 LOC105371045A0A1W2PR82 267 aa20.77■□□□□ 0.92
MSH6-210ENST00000540021 FAM9AQ8IZU1 332 aaPredicted RBP20.72■□□□□ 0.91
MSH6-210ENST00000540021 MYO15BQ96JP2 1530 aa20.45■□□□□ 0.86
MSH6-210ENST00000540021 TRIM26Q12899 539 aaPredicted RBP20.44■□□□□ 0.86
MSH6-210ENST00000540021 TTBK1Q5TCY1 1321 aaPredicted RBP20.36■□□□□ 0.85
MSH6-210ENST00000540021 TRIM41Q8WV44 630 aa20.34■□□□□ 0.85
MSH6-210ENST00000540021 ZEB1P37275 1124 aaPredicted RBP20.27■□□□□ 0.83
MSH6-210ENST00000540021 CCER1Q8TC90 406 aaPredicted RBP20.13■□□□□ 0.81
MSH6-210ENST00000540021 PELP1Q8IZL8 1130 aaKnown RBP20.11■□□□□ 0.81
MSH6-210ENST00000540021 ZCCHC6Q5VYS8 1495 aaKnown RBP20.05■□□□□ 0.8
MSH6-210ENST00000540021 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.94■□□□□ 0.78
MSH6-210ENST00000540021 DCAF1Q9Y4B6 1507 aa19.92■□□□□ 0.78
MSH6-210ENST00000540021 CENPBP07199 599 aaPredicted RBP19.88■□□□□ 0.77
MSH6-210ENST00000540021 YTHDC1Q96MU7 727 aaKnown RBP19.88■□□□□ 0.77
MSH6-210ENST00000540021 SCAF1Q9H7N4 1312 aaKnown RBP19.79■□□□□ 0.76
MSH6-210ENST00000540021 RANGAP1P46060 587 aaPredicted RBP19.68■□□□□ 0.74
MSH6-210ENST00000540021 DIEXFQ68CQ4 756 aaKnown RBP19.67■□□□□ 0.74
MSH6-210ENST00000540021 GTF3C3Q9Y5Q9 886 aa19.65■□□□□ 0.74
MSH6-210ENST00000540021 UBTFP17480 764 aaKnown RBP19.63■□□□□ 0.73
MSH6-210ENST00000540021 CCDC180Q9P1Z9 1646 aa19.61■□□□□ 0.73
MSH6-210ENST00000540021 ACIN1Q9UKV3 1341 aaKnown RBP19.56■□□□□ 0.72
MSH6-210ENST00000540021 NEUROD1Q13562 356 aa19.54■□□□□ 0.72
MSH6-210ENST00000540021 APLP2Q06481 763 aa19.51■□□□□ 0.71
MSH6-210ENST00000540021 HNRNPUL2Q1KMD3 747 aaKnown RBP19.46■□□□□ 0.71
MSH6-210ENST00000540021 SCRIBQ14160 1630 aa19.29■□□□□ 0.68
MSH6-210ENST00000540021 MYT1Q01538 1121 aa19.27■□□□□ 0.67
MSH6-210ENST00000540021 RSF1Q96T23 1441 aaPredicted RBP19.26■□□□□ 0.67
MSH6-210ENST00000540021 ZNF316A6NFI3 1004 aaPredicted RBP19.22■□□□□ 0.67
MSH6-210ENST00000540021 ABCC9O60706 1549 aa19.1■□□□□ 0.65
MSH6-210ENST00000540021 ITGAEP38570 1179 aa19.08■□□□□ 0.65
MSH6-210ENST00000540021 MIER1Q8N108 512 aa19.04■□□□□ 0.64
MSH6-210ENST00000540021 RB1CC1Q8TDY2 1594 aa19.03■□□□□ 0.64
MSH6-210ENST00000540021 CSRNP3Q8WYN3 585 aa18.98■□□□□ 0.63
MSH6-210ENST00000540021 BCANQ96GW7 911 aa18.91■□□□□ 0.62
MSH6-210ENST00000540021 ATP1B4Q9UN42 357 aaPredicted RBP18.91■□□□□ 0.62
MSH6-210ENST00000540021 CECR2Q9BXF3 1484 aa18.9■□□□□ 0.62
MSH6-210ENST00000540021 PABPN1Q86U42 306 aaKnown RBP eCLIP18.84■□□□□ 0.61
MSH6-210ENST00000540021 CEP162Q5TB80 1403 aa18.84■□□□□ 0.61
MSH6-210ENST00000540021 NEFLP07196 543 aa18.79■□□□□ 0.6
MSH6-210ENST00000540021 MROH2BQ7Z745 1585 aa18.7■□□□□ 0.58
MSH6-210ENST00000540021 SOGA1O94964 1423 aa18.68■□□□□ 0.58
MSH6-210ENST00000540021 ERICH6Q7L0X2 663 aa18.66■□□□□ 0.58
MSH6-210ENST00000540021 ABCC8Q09428 1581 aa18.63■□□□□ 0.57
MSH6-210ENST00000540021 CCDC88BA6NC98 1476 aa18.62■□□□□ 0.57
MSH6-210ENST00000540021 TNIKQ9UKE5 1360 aa18.6■□□□□ 0.57
MSH6-210ENST00000540021 WIZO95785 1651 aa18.56■□□□□ 0.56
MSH6-210ENST00000540021 CLIP1P30622 1438 aa18.55■□□□□ 0.56
MSH6-210ENST00000540021 FAM50AQ14320 339 aaKnown RBP18.55■□□□□ 0.56
MSH6-210ENST00000540021 FKBP8Q14318 412 aa18.53■□□□□ 0.56
MSH6-210ENST00000540021 SUPT16HQ9Y5B9 1047 aaKnown RBP18.5■□□□□ 0.55
MSH6-210ENST00000540021 DDX10Q13206 875 aaKnown RBP18.49■□□□□ 0.55
MSH6-210ENST00000540021 GOLGA3Q08378 1498 aa18.48■□□□□ 0.55
MSH6-210ENST00000540021 HIRIP3Q9BW71 556 aaPredicted RBP18.47■□□□□ 0.55
MSH6-210ENST00000540021 CNGB1Q14028 1251 aaPredicted RBP18.47■□□□□ 0.55
MSH6-210ENST00000540021 RUSC2Q8N2Y8 1516 aa18.45■□□□□ 0.54
MSH6-210ENST00000540021 TRIM52Q96A61 297 aa18.43■□□□□ 0.54
MSH6-210ENST00000540021 P3H3Q8IVL6 736 aa18.39■□□□□ 0.53
MSH6-210ENST00000540021 WRNQ14191 1432 aaPredicted RBP eCLIP18.38■□□□□ 0.53
MSH6-210ENST00000540021 EEA1Q15075 1411 aa18.37■□□□□ 0.53
MSH6-210ENST00000540021 ANP32CO43423 234 aa18.36■□□□□ 0.53
MSH6-210ENST00000540021 BAZ1AQ9NRL2 1556 aaPredicted RBP18.34■□□□□ 0.53
MSH6-210ENST00000540021 CLSPNQ9HAW4 1339 aa18.34■□□□□ 0.53
MSH6-210ENST00000540021 NACADO15069 1562 aa18.32■□□□□ 0.52
MSH6-210ENST00000540021 KCNH8Q96L42 1107 aa18.3■□□□□ 0.52
MSH6-210ENST00000540021 ANP32EQ9BTT0 268 aa18.29■□□□□ 0.52
MSH6-210ENST00000540021 CEP164Q9UPV0 1460 aa18.29■□□□□ 0.52
MSH6-210ENST00000540021 POLR3GLQ9BT43 218 aa18.27■□□□□ 0.52
MSH6-210ENST00000540021 IRX6P78412 446 aaPredicted RBP18.27■□□□□ 0.52
MSH6-210ENST00000540021 KANK4Q5T7N3 995 aaPredicted RBP18.27■□□□□ 0.52
MSH6-210ENST00000540021 TSHZ2Q9NRE2 1034 aa18.27■□□□□ 0.51
MSH6-210ENST00000540021 VPS8Q8N3P4 1428 aa18.23■□□□□ 0.51
MSH6-210ENST00000540021 SIN3AQ96ST3 1273 aa18.22■□□□□ 0.51
MSH6-210ENST00000540021 CDK11AQ9UQ88 783 aaPredicted RBP18.18■□□□□ 0.5
MSH6-210ENST00000540021 HNRNPUQ00839 825 aaKnown RBP eCLIP18.17■□□□□ 0.51e-6■□□□□ 11
MSH6-210ENST00000540021 TOP2AP11388 1531 aaKnown RBP18.13■□□□□ 0.49
MSH6-210ENST00000540021 DHX57Q6P158 1386 aaKnown RBP18.12■□□□□ 0.49
MSH6-210ENST00000540021 RAPGEF2Q9Y4G8 1499 aa18.11■□□□□ 0.49
MSH6-210ENST00000540021 TONSLQ96HA7 1378 aa18.05■□□□□ 0.48
MSH6-210ENST00000540021 BCL11AQ9H165 835 aa18.05■□□□□ 0.48
MSH6-210ENST00000540021 CCNB3Q8WWL7 1395 aa18.04■□□□□ 0.48
MSH6-210ENST00000540021 RBM19Q9Y4C8 960 aaKnown RBP18.04■□□□□ 0.48
MSH6-210ENST00000540021 FAM9BQ8IZU0 186 aa18.02■□□□□ 0.48
MSH6-210ENST00000540021 SMARCA2P51531 1590 aa18.02■□□□□ 0.48
MSH6-210ENST00000540021 ARID3CA6NKF2 412 aa18.01■□□□□ 0.47
MSH6-210ENST00000540021 SENP3-EIF4A1A0A087X0R7 540 aa17.99■□□□□ 0.47
MSH6-210ENST00000540021 RAB3GAP2Q9H2M9 1393 aa17.96■□□□□ 0.47
MSH6-210ENST00000540021 SMARCA4P51532 1647 aa17.96■□□□□ 0.47
MSH6-210ENST00000540021 ZNF326Q5BKZ1 582 aaKnown RBP17.95■□□□□ 0.46
MSH6-210ENST00000540021 BAZ1BQ9UIG0 1483 aaKnown RBP17.95■□□□□ 0.46
MSH6-210ENST00000540021 CHIC2Q9UKJ5 165 aa17.95■□□□□ 0.46
MSH6-210ENST00000540021 NBR1Q14596 966 aa17.92■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms