RNA–Protein interactions for RNA: ENST00000527823.5

USP48-212, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 554 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-212ENST00000527823 TTBK1Q5TCY1 1321 aaPredicted RBP14.44□□□□□ -0.1
USP48-212ENST00000527823 UGGT2Q9NYU1 1516 aa14.44□□□□□ -0.1
USP48-212ENST00000527823 PITPNM1O00562 1244 aa14.43□□□□□ -0.1
USP48-212ENST00000527823 CARMIL1Q5VZK9 1371 aa14.43□□□□□ -0.1
USP48-212ENST00000527823 CFAP43Q8NDM7 1665 aa14.42□□□□□ -0.1
USP48-212ENST00000527823 WDR7Q9Y4E6 1490 aa14.41□□□□□ -0.1
USP48-212ENST00000527823 IFNLR1Q8IU57 520 aaPredicted RBP14.39□□□□□ -0.11
USP48-212ENST00000527823 MIER1Q8N108 512 aa14.39□□□□□ -0.11
USP48-212ENST00000527823 CTTNBP2Q8WZ74 1663 aa14.39□□□□□ -0.11
USP48-212ENST00000527823 PLCD3Q8N3E9 789 aa14.38□□□□□ -0.11
USP48-212ENST00000527823 PRR29P0C7W0 189 aa14.37□□□□□ -0.11
USP48-212ENST00000527823 MAGI3Q5TCQ9 1506 aa14.36□□□□□ -0.11
USP48-212ENST00000527823 ABCA8O94911 1581 aa14.34□□□□□ -0.11
USP48-212ENST00000527823 ADAMTSL3P82987 1691 aa14.32□□□□□ -0.12
USP48-212ENST00000527823 RAPGEF2Q9Y4G8 1499 aa14.31□□□□□ -0.12
USP48-212ENST00000527823 KLHL34Q8N239 644 aa14.29□□□□□ -0.12
USP48-212ENST00000527823 RTN4Q9NQC3 1192 aaKnown RBP14.29□□□□□ -0.12
USP48-212ENST00000527823 CD109Q6YHK3 1445 aa14.28□□□□□ -0.12
USP48-212ENST00000527823 BCORL1Q5H9F3 1711 aa14.25□□□□□ -0.13
USP48-212ENST00000527823 PLEKHG5O94827 1062 aa14.25□□□□□ -0.13
USP48-212ENST00000527823 AMER1Q5JTC6 1135 aaPredicted RBP14.25□□□□□ -0.13
USP48-212ENST00000527823 MADDQ8WXG6 1647 aa14.25□□□□□ -0.13
USP48-212ENST00000527823 FRMPD1Q5SYB0 1578 aa14.25□□□□□ -0.13
USP48-212ENST00000527823 ARAP3Q8WWN8 1544 aa14.25□□□□□ -0.13
USP48-212ENST00000527823 ABCA9Q8IUA7 1624 aa14.24□□□□□ -0.13
USP48-212ENST00000527823 PCF11O94913 1555 aaKnown RBP14.24□□□□□ -0.13
USP48-212ENST00000527823 PTPRMP28827 1452 aa14.24□□□□□ -0.13
USP48-212ENST00000527823 FBXO41Q8TF61 875 aa14.23□□□□□ -0.13
USP48-212ENST00000527823 CREBZFQ9NS37 354 aa14.22□□□□□ -0.13
USP48-212ENST00000527823 GOLGA3Q08378 1498 aa14.2□□□□□ -0.14
USP48-212ENST00000527823 LMTK3Q96Q04 1460 aa14.2□□□□□ -0.14
USP48-212ENST00000527823 CHRDL2Q6WN34 429 aa14.19□□□□□ -0.14
USP48-212ENST00000527823 ARHGEF40Q8TER5 1519 aa14.19□□□□□ -0.14
USP48-212ENST00000527823 RIMS1Q86UR5 1692 aaKnown RBP14.18□□□□□ -0.14
USP48-212ENST00000527823 SPOCK2Q92563 424 aa14.16□□□□□ -0.14
USP48-212ENST00000527823 RICTORQ6R327 1708 aa14.15□□□□□ -0.14
USP48-212ENST00000527823 SIGLEC1Q9BZZ2 1709 aa14.15□□□□□ -0.14
USP48-212ENST00000527823 CHADLQ6NUI6 762 aa14.14□□□□□ -0.15
USP48-212ENST00000527823 ZBTB47Q9UFB7 747 aaPredicted RBP14.14□□□□□ -0.15
USP48-212ENST00000527823 KCNH8Q96L42 1107 aa14.13□□□□□ -0.15
USP48-212ENST00000527823 SAMD9Q5K651 1589 aa14.13□□□□□ -0.15
USP48-212ENST00000527823 ATP10BO94823 1461 aa14.12□□□□□ -0.15
USP48-212ENST00000527823 NEO1Q92859 1461 aa14.12□□□□□ -0.15
USP48-212ENST00000527823 RAPGEF6Q8TEU7 1601 aa14.12□□□□□ -0.15
USP48-212ENST00000527823 FXR2P51116 673 aaKnown RBP eCLIP14.1□□□□□ -0.15
USP48-212ENST00000527823 PRXQ9BXM0 1461 aa14.1□□□□□ -0.15
USP48-212ENST00000527823 MNX1P50219 401 aaPredicted RBP14.09□□□□□ -0.15
USP48-212ENST00000527823 PRKAR2AP13861 404 aaKnown RBP14.08□□□□□ -0.16
USP48-212ENST00000527823 PHLDB1Q86UU1 1377 aa14.07□□□□□ -0.16
USP48-212ENST00000527823 FER1L4A9Z1Z3 1794 aa14.06□□□□□ -0.16
USP48-212ENST00000527823 ZMYM4Q5VZL5 1548 aa14.06□□□□□ -0.16
USP48-212ENST00000527823 PIP4P2Q8N4L2 257 aa14.06□□□□□ -0.16
USP48-212ENST00000527823 CFAP74Q9C0B2 1584 aa14.05□□□□□ -0.16
USP48-212ENST00000527823 ARID3CA6NKF2 412 aa14.05□□□□□ -0.16
USP48-212ENST00000527823 RAPGEF3O95398 923 aa14.05□□□□□ -0.16
USP48-212ENST00000527823 TTC37Q6PGP7 1564 aa14.04□□□□□ -0.16
USP48-212ENST00000527823 NUP153P49790 1475 aaKnown RBP14.03□□□□□ -0.16
USP48-212ENST00000527823 ZFYVE16Q7Z3T8 1539 aa14□□□□□ -0.17
USP48-212ENST00000527823 PREX1Q8TCU6 1659 aa14□□□□□ -0.17
USP48-212ENST00000527823 EFCAB5A4FU69 1503 aa14□□□□□ -0.17
USP48-212ENST00000527823 FANCAO15360 1455 aa13.99□□□□□ -0.17
USP48-212ENST00000527823 DENND4BO75064 1496 aaPredicted RBP13.99□□□□□ -0.17
USP48-212ENST00000527823 FHOD3Q2V2M9 1422 aa13.98□□□□□ -0.17
USP48-212ENST00000527823 NUBP1P53384 320 aa13.98□□□□□ -0.17
USP48-212ENST00000527823 HSPA2P54652 639 aa13.98□□□□□ -0.17
USP48-212ENST00000527823 FARP1Q9Y4F1 1045 aaPredicted RBP13.98□□□□□ -0.17
USP48-212ENST00000527823 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.98□□□□□ -0.17
USP48-212ENST00000527823 ARID4BQ4LE39 1312 aaPredicted RBP13.97□□□□□ -0.17
USP48-212ENST00000527823 PKD2Q13563 968 aa13.97□□□□□ -0.17
USP48-212ENST00000527823 YEATS2Q9ULM3 1422 aa13.97□□□□□ -0.17
USP48-212ENST00000527823 CIZ1Q9ULV3 898 aaPredicted RBP13.96□□□□□ -0.17
USP48-212ENST00000527823 HECW1Q76N89 1606 aa13.96□□□□□ -0.17
USP48-212ENST00000527823 STRCQ7RTU9 1775 aa13.94□□□□□ -0.18
USP48-212ENST00000527823 SPATA31D1Q6ZQQ2 1576 aa13.94□□□□□ -0.18
USP48-212ENST00000527823 AKNAQ7Z591 1439 aa13.94□□□□□ -0.18
USP48-212ENST00000527823 P3H3Q8IVL6 736 aa13.94□□□□□ -0.18
USP48-212ENST00000527823 ARHGEF12Q9NZN5 1544 aa13.94□□□□□ -0.18
USP48-212ENST00000527823 POGZQ7Z3K3 1410 aa13.92□□□□□ -0.18
USP48-212ENST00000527823 RASEFQ8IZ41 740 aa13.91□□□□□ -0.18
USP48-212ENST00000527823 CERKQ8TCT0 537 aa13.9□□□□□ -0.18
USP48-212ENST00000527823 MAGI2Q86UL8 1455 aa13.9□□□□□ -0.18
USP48-212ENST00000527823 DCAF8Q5TAQ9 597 aa13.89□□□□□ -0.19
USP48-212ENST00000527823 MYO5CQ9NQX4 1742 aa13.89□□□□□ -0.19
USP48-212ENST00000527823 CDK13Q14004 1512 aaKnown RBP13.87□□□□□ -0.19
USP48-212ENST00000527823 ILDR2Q71H61 639 aa13.87□□□□□ -0.19
USP48-212ENST00000527823 DISP3Q9P2K9 1392 aa13.85□□□□□ -0.19
USP48-212ENST00000527823 C9orf84Q5VXU9 1444 aa13.85□□□□□ -0.19
USP48-212ENST00000527823 ECM2O94769 699 aaPredicted RBP13.85□□□□□ -0.19
USP48-212ENST00000527823 FAM212AQ96EL1 285 aa13.85□□□□□ -0.19
USP48-212ENST00000527823 KDM5CP41229 1560 aa13.84□□□□□ -0.19
USP48-212ENST00000527823 GSE1Q14687 1217 aa13.84□□□□□ -0.19
USP48-212ENST00000527823 C3P01024 1663 aa13.84□□□□□ -0.19
USP48-212ENST00000527823 DIP2CQ9Y2E4 1556 aa13.83□□□□□ -0.2
USP48-212ENST00000527823 KIF14Q15058 1648 aa13.82□□□□□ -0.2
USP48-212ENST00000527823 ABCA6Q8N139 1617 aa13.82□□□□□ -0.2
USP48-212ENST00000527823 REREQ9P2R6 1566 aa13.81□□□□□ -0.2
USP48-212ENST00000527823 TSPYL2Q9H2G4 693 aaPredicted RBP13.81□□□□□ -0.2
USP48-212ENST00000527823 SCAPERQ9BY12 1400 aa13.81□□□□□ -0.2
USP48-212ENST00000527823 ATP10AO60312 1499 aa13.8□□□□□ -0.2
USP48-212ENST00000527823 SOCS7O14512 581 aa13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms