RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 FANCAO15360 1455 aa23.84■■□□□ 1.41
LSM1-203ENST00000520755 CCNB3Q8WWL7 1395 aa23.83■■□□□ 1.41
LSM1-203ENST00000520755 ARAP3Q8WWN8 1544 aa23.83■■□□□ 1.41
LSM1-203ENST00000520755 NEO1Q92859 1461 aa23.81■■□□□ 1.4
LSM1-203ENST00000520755 GPATCH8Q9UKJ3 1502 aaKnown RBP23.8■■□□□ 1.4
LSM1-203ENST00000520755 PHLDB1Q86UU1 1377 aa23.78■■□□□ 1.4
LSM1-203ENST00000520755 AKNAQ7Z591 1439 aa23.77■■□□□ 1.4
LSM1-203ENST00000520755 EFCAB2Q5VUJ9 269 aa23.77■■□□□ 1.4
LSM1-203ENST00000520755 COL17A1Q9UMD9 1497 aaPredicted RBP23.74■■□□□ 1.39
LSM1-203ENST00000520755 CFDP1Q9UEE9 299 aaPredicted RBP23.73■■□□□ 1.39
LSM1-203ENST00000520755 ADGRL1O94910 1474 aa23.73■■□□□ 1.39
LSM1-203ENST00000520755 ZNF777Q9ULD5 760 aaPredicted RBP23.72■■□□□ 1.39
LSM1-203ENST00000520755 MYOM3Q5VTT5 1437 aa23.72■■□□□ 1.39
LSM1-203ENST00000520755 SAMD9LQ8IVG5 1584 aa23.71■■□□□ 1.39
LSM1-203ENST00000520755 ABCC1P33527 1531 aa23.68■■□□□ 1.38
LSM1-203ENST00000520755 SCAPERQ9BY12 1400 aa23.67■■□□□ 1.38
LSM1-203ENST00000520755 RICTORQ6R327 1708 aa23.67■■□□□ 1.38
LSM1-203ENST00000520755 PTPN23Q9H3S7 1636 aa23.67■■□□□ 1.38
LSM1-203ENST00000520755 DENND4BO75064 1496 aaPredicted RBP23.67■■□□□ 1.38
LSM1-203ENST00000520755 FRMPD1Q5SYB0 1578 aa23.66■■□□□ 1.38
LSM1-203ENST00000520755 FGD6Q6ZV73 1430 aa23.66■■□□□ 1.38
LSM1-203ENST00000520755 RAPGEF3O95398 923 aa23.65■■□□□ 1.38
LSM1-203ENST00000520755 SYCP2Q9BX26 1530 aa23.64■■□□□ 1.37
LSM1-203ENST00000520755 ZNF644Q9H582 1327 aaPredicted RBP23.62■■□□□ 1.37
LSM1-203ENST00000520755 RRBP1Q9P2E9 1410 aaKnown RBP23.62■■□□□ 1.37
LSM1-203ENST00000520755 ARHGEF12Q9NZN5 1544 aa23.62■■□□□ 1.37
LSM1-203ENST00000520755 CAMSAP2Q08AD1 1489 aa23.62■■□□□ 1.37
LSM1-203ENST00000520755 POGZQ7Z3K3 1410 aa23.61■■□□□ 1.37
LSM1-203ENST00000520755 MIA2Q96PC5 1412 aa23.61■■□□□ 1.37
LSM1-203ENST00000520755 TCOF1Q13428 1488 aaKnown RBP23.61■■□□□ 1.37
LSM1-203ENST00000520755 PLEKHH2Q8IVE3 1493 aa23.61■■□□□ 1.37
LSM1-203ENST00000520755 HNRNPMP52272 730 aaKnown RBP eCLIP23.57■■□□□ 1.36
LSM1-203ENST00000520755 KIAA1107Q9UPP5 1409 aa23.57■■□□□ 1.36
LSM1-203ENST00000520755 TRAPPC8Q9Y2L5 1435 aa23.57■■□□□ 1.36
LSM1-203ENST00000520755 CROCC2H7BZ55 1655 aa23.57■■□□□ 1.36
LSM1-203ENST00000520755 ZNF518AQ6AHZ1 1483 aa23.56■■□□□ 1.36
LSM1-203ENST00000520755 ZMYM4Q5VZL5 1548 aa23.54■■□□□ 1.36
LSM1-203ENST00000520755 KDM5CP41229 1560 aa23.54■■□□□ 1.36
LSM1-203ENST00000520755 AFAP1Q8N556 730 aa23.54■■□□□ 1.36
LSM1-203ENST00000520755 DNMT1P26358 1616 aaKnown RBP23.52■■□□□ 1.36
LSM1-203ENST00000520755 MBD5Q9P267 1494 aa23.51■■□□□ 1.35
LSM1-203ENST00000520755 HECW2Q9P2P5 1572 aa23.51■■□□□ 1.35
LSM1-203ENST00000520755 ARHGEF5Q12774 1597 aa23.5■■□□□ 1.35
LSM1-203ENST00000520755 ZFYVE16Q7Z3T8 1539 aa23.49■■□□□ 1.35
LSM1-203ENST00000520755 MYT1LQ9UL68 1186 aa23.48■■□□□ 1.35
LSM1-203ENST00000520755 CCDC141Q6ZP82 1450 aa23.48■■□□□ 1.35
LSM1-203ENST00000520755 ARHGEF40Q8TER5 1519 aa23.47■■□□□ 1.35
LSM1-203ENST00000520755 MAGI2Q86UL8 1455 aa23.46■■□□□ 1.35
LSM1-203ENST00000520755 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.46■■□□□ 1.35
LSM1-203ENST00000520755 KIDINS220Q9ULH0 1771 aa23.45■■□□□ 1.34
LSM1-203ENST00000520755 FAM50AQ14320 339 aaKnown RBP23.45■■□□□ 1.34
LSM1-203ENST00000520755 YEATS2Q9ULM3 1422 aa23.44■■□□□ 1.34
LSM1-203ENST00000520755 INO80Q9ULG1 1556 aaPredicted RBP23.44■■□□□ 1.34
LSM1-203ENST00000520755 MLH3Q9UHC1 1453 aa23.43■■□□□ 1.34
LSM1-203ENST00000520755 SPAG9O60271 1321 aaKnown RBP23.43■■□□□ 1.34
LSM1-203ENST00000520755 ATP7AQ04656 1500 aa23.43■■□□□ 1.34
LSM1-203ENST00000520755 ADGBQ8N7X0 1667 aa23.42■■□□□ 1.34
LSM1-203ENST00000520755 ABCA6Q8N139 1617 aa23.42■■□□□ 1.34
LSM1-203ENST00000520755 RSPH4AQ5TD94 716 aa23.41■■□□□ 1.34
LSM1-203ENST00000520755 DIP2CQ9Y2E4 1556 aa23.4■■□□□ 1.34
LSM1-203ENST00000520755 DAPK1P53355 1430 aa23.4■■□□□ 1.34
LSM1-203ENST00000520755 MAST1Q9Y2H9 1570 aa23.39■■□□□ 1.33
LSM1-203ENST00000520755 ABCC5O15440 1437 aa23.38■■□□□ 1.33
LSM1-203ENST00000520755 TSPY4P0CV99 314 aa23.37■■□□□ 1.33
LSM1-203ENST00000520755 TSPY10P0CW01 314 aa23.37■■□□□ 1.33
LSM1-203ENST00000520755 SHANK2Q9UPX8 1470 aa23.36■■□□□ 1.33
LSM1-203ENST00000520755 PTPRKQ15262 1439 aa23.36■■□□□ 1.33
LSM1-203ENST00000520755 ATP10AO60312 1499 aa23.35■■□□□ 1.33
LSM1-203ENST00000520755 C9orf84Q5VXU9 1444 aa23.34■■□□□ 1.33
LSM1-203ENST00000520755 SIGLEC1Q9BZZ2 1709 aa23.34■■□□□ 1.33
LSM1-203ENST00000520755 RTEL1-TNFRSF6BF6WH68 1400 aa23.33■■□□□ 1.33
LSM1-203ENST00000520755 PLXNC1O60486 1568 aa23.31■■□□□ 1.32
LSM1-203ENST00000520755 GCC2Q8IWJ2 1684 aa23.3■■□□□ 1.32
LSM1-203ENST00000520755 TRIM26Q12899 539 aaPredicted RBP23.3■■□□□ 1.32
LSM1-203ENST00000520755 REREQ9P2R6 1566 aa23.29■■□□□ 1.32
LSM1-203ENST00000520755 ARID4BQ4LE39 1312 aaPredicted RBP23.29■■□□□ 1.32
LSM1-203ENST00000520755 ITGAEP38570 1179 aa23.28■■□□□ 1.32
LSM1-203ENST00000520755 ADGRL2O95490 1459 aa23.28■■□□□ 1.32
LSM1-203ENST00000520755 CHIC2Q9UKJ5 165 aa23.27■■□□□ 1.32
LSM1-203ENST00000520755 A2MP01023 1474 aa23.25■■□□□ 1.31
LSM1-203ENST00000520755 BCORL1Q5H9F3 1711 aa23.22■■□□□ 1.31
LSM1-203ENST00000520755 ANKRD30AQ9BXX3 1397 aa23.21■■□□□ 1.31
LSM1-203ENST00000520755 AGLP35573 1532 aa23.19■■□□□ 1.3
LSM1-203ENST00000520755 KIF15Q9NS87 1388 aa23.19■■□□□ 1.3
LSM1-203ENST00000520755 RRP7BPQ9NSQ0 103 aa23.19■■□□□ 1.3
LSM1-203ENST00000520755 ROCK1Q13464 1354 aa23.18■■□□□ 1.3
LSM1-203ENST00000520755 DHX29Q7Z478 1369 aaKnown RBP23.18■■□□□ 1.3
LSM1-203ENST00000520755 MLECQ14165 292 aa23.18■■□□□ 1.3
LSM1-203ENST00000520755 DUOX2Q9NRD8 1548 aa23.18■■□□□ 1.3
LSM1-203ENST00000520755 NCOA1Q15788 1441 aa23.17■■□□□ 1.3
LSM1-203ENST00000520755 ADAMTSL3P82987 1691 aa23.15■■□□□ 1.3
LSM1-203ENST00000520755 EIF2AK4Q9P2K8 1649 aaKnown RBP23.14■■□□□ 1.29
LSM1-203ENST00000520755 HFM1A2PYH4 1435 aa23.14■■□□□ 1.29
LSM1-203ENST00000520755 FER1L4A9Z1Z3 1794 aa23.14■■□□□ 1.29
LSM1-203ENST00000520755 NAIPQ13075 1403 aa23.13■■□□□ 1.29
LSM1-203ENST00000520755 MADDQ8WXG6 1647 aa23.12■■□□□ 1.29
LSM1-203ENST00000520755 KDM4FA0A1W2PPD8 638 aa23.1■■□□□ 1.29
LSM1-203ENST00000520755 KIF3BO15066 747 aa23.1■■□□□ 1.29
LSM1-203ENST00000520755 PCGF6Q9BYE7 350 aa23.1■■□□□ 1.29
LSM1-203ENST00000520755 ERBINQ96RT1 1412 aa23.09■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms