RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 NISCHQ9Y2I1 1504 aa36.54■■■■□ 3.44
LSM1-203ENST00000520755 CCDC180Q9P1Z9 1646 aa32.4■■■□□ 2.78
LSM1-203ENST00000520755 ABCC9O60706 1549 aa31.41■■■□□ 2.62
LSM1-203ENST00000520755 ZCCHC6Q5VYS8 1495 aaKnown RBP30.5■■■□□ 2.47
LSM1-203ENST00000520755 DCAF8L2P0C7V8 631 aa30.45■■■□□ 2.47
LSM1-203ENST00000520755 NACADO15069 1562 aa30.34■■■□□ 2.45
LSM1-203ENST00000520755 RB1CC1Q8TDY2 1594 aa30.33■■■□□ 2.45
LSM1-203ENST00000520755 MYO15BQ96JP2 1530 aa30.2■■■□□ 2.42
LSM1-203ENST00000520755 DCAF1Q9Y4B6 1507 aa30.2■■■□□ 2.42
LSM1-203ENST00000520755 UNC13AQ9UPW8 1703 aa29.75■■■□□ 2.35
LSM1-203ENST00000520755 SCRIBQ14160 1630 aa29.62■■■□□ 2.33
LSM1-203ENST00000520755 BICRAQ9NZM4 1560 aa29.4■■■□□ 2.3
LSM1-203ENST00000520755 PABPN1Q86U42 306 aaKnown RBP eCLIP29.38■■■□□ 2.29
LSM1-203ENST00000520755 SHROOM4Q9ULL8 1493 aa29.1■■■□□ 2.25
LSM1-203ENST00000520755 EIF4G1Q04637 1599 aaKnown RBP28.61■■■□□ 2.17
LSM1-203ENST00000520755 DNAJC5BQ9UF47 199 aa28.5■■■□□ 2.15
LSM1-203ENST00000520755 CECR2Q9BXF3 1484 aa28.44■■■□□ 2.14
LSM1-203ENST00000520755 CC2D2AQ9P2K1 1620 aa28.43■■■□□ 2.14
LSM1-203ENST00000520755 SMARCA4P51532 1647 aa28.32■■■□□ 2.12
LSM1-203ENST00000520755 BAZ1AQ9NRL2 1556 aaPredicted RBP28.31■■■□□ 2.12
LSM1-203ENST00000520755 MROH2BQ7Z745 1585 aa28.18■■■□□ 2.1
LSM1-203ENST00000520755 ATAD2BQ9ULI0 1458 aa28.05■■■□□ 2.08
LSM1-203ENST00000520755 SMARCA2P51531 1590 aa28.04■■■□□ 2.08
LSM1-203ENST00000520755 PEG3Q9GZU2 1588 aa27.99■■■□□ 2.07
LSM1-203ENST00000520755 NCAPD3P42695 1498 aa27.95■■■□□ 2.07
LSM1-203ENST00000520755 WIZO95785 1651 aa27.94■■■□□ 2.06
LSM1-203ENST00000520755 RSF1Q96T23 1441 aaPredicted RBP27.93■■■□□ 2.06
LSM1-203ENST00000520755 HMGXB3Q12766 1538 aa27.88■■■□□ 2.05
LSM1-203ENST00000520755 BAZ1BQ9UIG0 1483 aaKnown RBP27.87■■■□□ 2.05
LSM1-203ENST00000520755 TOP2AP11388 1531 aaKnown RBP27.62■■■□□ 2.01
LSM1-203ENST00000520755 SUPT5HO00267 1087 aaKnown RBP27.52■■■□□ 2
LSM1-203ENST00000520755 CCDC88BA6NC98 1476 aa27.28■■□□□ 1.96
LSM1-203ENST00000520755 NESP48681 1621 aa27.27■■□□□ 1.96
LSM1-203ENST00000520755 LAMC3Q9Y6N6 1575 aa27.22■■□□□ 1.95
LSM1-203ENST00000520755 CADPSQ9ULU8 1353 aa27.16■■□□□ 1.94
LSM1-203ENST00000520755 CFTRP13569 1480 aa27.07■■□□□ 1.92
LSM1-203ENST00000520755 ERCC6Q03468 1493 aa27.05■■□□□ 1.92
LSM1-203ENST00000520755 PRDM2Q13029 1718 aa27.04■■□□□ 1.92
LSM1-203ENST00000520755 KIF21AQ7Z4S6 1674 aa27.02■■□□□ 1.92
LSM1-203ENST00000520755 PDS5BQ9NTI5 1447 aa26.99■■□□□ 1.91
LSM1-203ENST00000520755 FANCD2Q9BXW9 1451 aa26.89■■□□□ 1.9
LSM1-203ENST00000520755 CEP164Q9UPV0 1460 aa26.85■■□□□ 1.89
LSM1-203ENST00000520755 THOC2Q8NI27 1593 aaKnown RBP26.8■■□□□ 1.88
LSM1-203ENST00000520755 MRC2Q9UBG0 1479 aa26.73■■□□□ 1.87
LSM1-203ENST00000520755 WDR62O43379 1518 aa26.64■■□□□ 1.85
LSM1-203ENST00000520755 URB2Q14146 1524 aaKnown RBP26.61■■□□□ 1.85
LSM1-203ENST00000520755 CUX2O14529 1486 aa26.61■■□□□ 1.85
LSM1-203ENST00000520755 DNMBPQ6XZF7 1577 aa26.51■■□□□ 1.83
LSM1-203ENST00000520755 TOPBP1Q92547 1522 aa26.5■■□□□ 1.83
LSM1-203ENST00000520755 ABCC8Q09428 1581 aa26.49■■□□□ 1.83
LSM1-203ENST00000520755 CUX1P39880 1505 aa26.43■■□□□ 1.82
LSM1-203ENST00000520755 SYNJ1O43426 1573 aa26.34■■□□□ 1.81
LSM1-203ENST00000520755 WRNQ14191 1432 aaPredicted RBP eCLIP26.34■■□□□ 1.81
LSM1-203ENST00000520755 BIVM-ERCC5R4GMW8 1640 aa26.33■■□□□ 1.81
LSM1-203ENST00000520755 POLA1P09884 1462 aaPredicted RBP26.3■■□□□ 1.8
LSM1-203ENST00000520755 FGD5Q6ZNL6 1462 aa26.29■■□□□ 1.8
LSM1-203ENST00000520755 TOP2BQ02880 1626 aa26.28■■□□□ 1.8
LSM1-203ENST00000520755 IFT140Q96RY7 1462 aa26.24■■□□□ 1.79
LSM1-203ENST00000520755 TARBP1Q13395 1621 aaKnown RBP26.21■■□□□ 1.79
LSM1-203ENST00000520755 RAD54L2Q9Y4B4 1467 aa26.19■■□□□ 1.78
LSM1-203ENST00000520755 SOGA1O94964 1423 aa26.18■■□□□ 1.78
LSM1-203ENST00000520755 ZNF608Q9ULD9 1512 aaPredicted RBP26.13■■□□□ 1.77
LSM1-203ENST00000520755 WDR97A6NE52 1622 aa26.1■■□□□ 1.77
LSM1-203ENST00000520755 CHIC1Q5VXU3 224 aa26.08■■□□□ 1.77
LSM1-203ENST00000520755 EIF4G3O43432 1585 aaKnown RBP26.07■■□□□ 1.76
LSM1-203ENST00000520755 ABCA10Q8WWZ4 1543 aa26.02■■□□□ 1.76
LSM1-203ENST00000520755 AQRO60306 1485 aaKnown RBP eCLIP26.01■■□□□ 1.756e-7■■■□□ 15.2
LSM1-203ENST00000520755 TDRD9Q8NDG6 1382 aaKnown RBP26■■□□□ 1.75
LSM1-203ENST00000520755 TRIM41Q8WV44 630 aa25.94■■□□□ 1.74
LSM1-203ENST00000520755 ABCA5Q8WWZ7 1642 aa25.94■■□□□ 1.74
LSM1-203ENST00000520755 PBRM1Q86U86 1689 aa25.91■■□□□ 1.74
LSM1-203ENST00000520755 GAPVD1Q14C86 1478 aa25.9■■□□□ 1.74
LSM1-203ENST00000520755 GRIN2BQ13224 1484 aa25.84■■□□□ 1.73
LSM1-203ENST00000520755 SNAPC4Q5SXM2 1469 aa25.79■■□□□ 1.72
LSM1-203ENST00000520755 KIF27Q86VH2 1401 aa25.77■■□□□ 1.72
LSM1-203ENST00000520755 MAGI1Q96QZ7 1491 aaPredicted RBP25.74■■□□□ 1.71
LSM1-203ENST00000520755 CHD1O14646 1710 aa25.74■■□□□ 1.71
LSM1-203ENST00000520755 ERICH3Q5RHP9 1530 aa25.72■■□□□ 1.71
LSM1-203ENST00000520755 RUSC2Q8N2Y8 1516 aa25.72■■□□□ 1.71
LSM1-203ENST00000520755 ADAMTS12P58397 1594 aa25.67■■□□□ 1.7
LSM1-203ENST00000520755 FBLN2P98095 1184 aa25.66■■□□□ 1.7
LSM1-203ENST00000520755 SYNJ2O15056 1496 aa25.64■■□□□ 1.69
LSM1-203ENST00000520755 CHMP7Q8WUX9 453 aaPredicted RBP25.6■■□□□ 1.69
LSM1-203ENST00000520755 IGF1RP08069 1367 aa25.59■■□□□ 1.69
LSM1-203ENST00000520755 CUL7Q14999 1698 aa25.59■■□□□ 1.69
LSM1-203ENST00000520755 FHAD1B1AJZ9 1412 aa25.59■■□□□ 1.69
LSM1-203ENST00000520755 EEA1Q15075 1411 aa25.55■■□□□ 1.68
LSM1-203ENST00000520755 OSCARQ8IYS5 282 aa25.54■■□□□ 1.68
LSM1-203ENST00000520755 GRIN2AQ12879 1464 aa25.52■■□□□ 1.68
LSM1-203ENST00000520755 CARMIL1Q5VZK9 1371 aa25.47■■□□□ 1.67
LSM1-203ENST00000520755 FAM9AQ8IZU1 332 aaPredicted RBP25.44■■□□□ 1.66
LSM1-203ENST00000520755 CEP170Q5SW79 1584 aa25.41■■□□□ 1.66
LSM1-203ENST00000520755 DNAJC5Q9H3Z4 198 aa25.41■■□□□ 1.66
LSM1-203ENST00000520755 KIF21BO75037 1637 aa25.41■■□□□ 1.66
LSM1-203ENST00000520755 CSRNP3Q8WYN3 585 aa25.38■■□□□ 1.65
LSM1-203ENST00000520755 PRXQ9BXM0 1461 aa25.38■■□□□ 1.65
LSM1-203ENST00000520755 CLASP1Q7Z460 1538 aa25.37■■□□□ 1.65
LSM1-203ENST00000520755 RAPGEF2Q9Y4G8 1499 aa25.37■■□□□ 1.65
LSM1-203ENST00000520755 NUP160Q12769 1436 aa25.37■■□□□ 1.65
LSM1-203ENST00000520755 CTTNBP2Q8WZ74 1663 aa25.23■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 145.5 ms