RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 SPAG9O60271 1321 aaKnown RBP11.9□□□□□ -0.51
LIMCH1-219ENST00000514096 KIF3BO15066 747 aa11.89□□□□□ -0.51
LIMCH1-219ENST00000514096 AKNAQ7Z591 1439 aa11.87□□□□□ -0.51
LIMCH1-219ENST00000514096 EFCAB5A4FU69 1503 aa11.87□□□□□ -0.51
LIMCH1-219ENST00000514096 UHRF1BP1LA0JNW5 1464 aa11.87□□□□□ -0.51
LIMCH1-219ENST00000514096 SAMD9Q5K651 1589 aa11.87□□□□□ -0.51
LIMCH1-219ENST00000514096 TROQ12816 1431 aaPredicted RBP11.86□□□□□ -0.51
LIMCH1-219ENST00000514096 KIF13AQ9H1H9 1805 aa11.86□□□□□ -0.51
LIMCH1-219ENST00000514096 ADGRL1O94910 1474 aa11.86□□□□□ -0.51
LIMCH1-219ENST00000514096 CASKIN1Q8WXD9 1431 aa11.86□□□□□ -0.51
LIMCH1-219ENST00000514096 MAPKBP1O60336 1514 aa11.86□□□□□ -0.51
LIMCH1-219ENST00000514096 CHGAP10645 457 aaKnown RBP11.86□□□□□ -0.51
LIMCH1-219ENST00000514096 VPS8Q8N3P4 1428 aa11.85□□□□□ -0.51
LIMCH1-219ENST00000514096 YEATS2Q9ULM3 1422 aa11.84□□□□□ -0.51
LIMCH1-219ENST00000514096 BCANQ96GW7 911 aa11.84□□□□□ -0.51
LIMCH1-219ENST00000514096 TEX14Q8IWB6 1497 aa11.84□□□□□ -0.51
LIMCH1-219ENST00000514096 KIF14Q15058 1648 aa11.84□□□□□ -0.51
LIMCH1-219ENST00000514096 SCAF1Q9H7N4 1312 aaKnown RBP11.83□□□□□ -0.52
LIMCH1-219ENST00000514096 CCDC18Q5T9S5 1454 aa11.83□□□□□ -0.52
LIMCH1-219ENST00000514096 TRIM52Q96A61 297 aa11.83□□□□□ -0.52
LIMCH1-219ENST00000514096 HECW1Q76N89 1606 aa11.82□□□□□ -0.52
LIMCH1-219ENST00000514096 DENND4BO75064 1496 aaPredicted RBP11.82□□□□□ -0.52
LIMCH1-219ENST00000514096 TTC37Q6PGP7 1564 aa11.81□□□□□ -0.52
LIMCH1-219ENST00000514096 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.81□□□□□ -0.52
LIMCH1-219ENST00000514096 TRAPPC8Q9Y2L5 1435 aa11.81□□□□□ -0.52
LIMCH1-219ENST00000514096 MAGI3Q5TCQ9 1506 aa11.8□□□□□ -0.52
LIMCH1-219ENST00000514096 STAG3Q9UJ98 1225 aa11.79□□□□□ -0.52
LIMCH1-219ENST00000514096 NUTM2DQ5VT03 806 aaPredicted RBP11.79□□□□□ -0.52
LIMCH1-219ENST00000514096 PLCH2O75038 1416 aa11.77□□□□□ -0.52
LIMCH1-219ENST00000514096 WASHC2CQ9Y4E1 1318 aa11.77□□□□□ -0.53
LIMCH1-219ENST00000514096 FBXO31Q5XUX0 539 aaPredicted RBP11.77□□□□□ -0.53
LIMCH1-219ENST00000514096 FYCO1Q9BQS8 1478 aa11.77□□□□□ -0.53
LIMCH1-219ENST00000514096 HRCP23327 699 aa11.76□□□□□ -0.53
LIMCH1-219ENST00000514096 PHLDB1Q86UU1 1377 aa11.76□□□□□ -0.53
LIMCH1-219ENST00000514096 NCOA2Q15596 1464 aa11.76□□□□□ -0.53
LIMCH1-219ENST00000514096 GPATCH8Q9UKJ3 1502 aaKnown RBP11.72□□□□□ -0.53
LIMCH1-219ENST00000514096 FOXD1Q16676 465 aa11.71□□□□□ -0.53
LIMCH1-219ENST00000514096 SYCP2Q9BX26 1530 aa11.71□□□□□ -0.53
LIMCH1-219ENST00000514096 LRRC9Q6ZRR7 1453 aa11.71□□□□□ -0.54
LIMCH1-219ENST00000514096 CENPBP07199 599 aaPredicted RBP11.69□□□□□ -0.54
LIMCH1-219ENST00000514096 RBM33Q96EV2 1170 aaKnown RBP11.69□□□□□ -0.54
LIMCH1-219ENST00000514096 ARHGEF12Q9NZN5 1544 aa11.68□□□□□ -0.54
LIMCH1-219ENST00000514096 LRRIQ1Q96JM4 1722 aa11.68□□□□□ -0.54
LIMCH1-219ENST00000514096 PLEKHG5O94827 1062 aa11.66□□□□□ -0.54
LIMCH1-219ENST00000514096 EIF5BO60841 1220 aaKnown RBP11.66□□□□□ -0.54
LIMCH1-219ENST00000514096 DAXXQ9UER7 740 aaPredicted RBP11.65□□□□□ -0.54
LIMCH1-219ENST00000514096 MAP3K4Q9Y6R4 1608 aa11.65□□□□□ -0.54
LIMCH1-219ENST00000514096 TIAM1Q13009 1591 aa11.65□□□□□ -0.54
LIMCH1-219ENST00000514096 POGZQ7Z3K3 1410 aa11.65□□□□□ -0.54
LIMCH1-219ENST00000514096 PPRC1Q5VV67 1664 aaKnown RBP11.65□□□□□ -0.55
LIMCH1-219ENST00000514096 CFAP65Q6ZU64 1925 aaKnown RBP11.65□□□□□ -0.55
LIMCH1-219ENST00000514096 NEO1Q92859 1461 aa11.64□□□□□ -0.55
LIMCH1-219ENST00000514096 ABCA9Q8IUA7 1624 aa11.64□□□□□ -0.55
LIMCH1-219ENST00000514096 RGL3Q3MIN7 710 aa11.64□□□□□ -0.55
LIMCH1-219ENST00000514096 CFAP43Q8NDM7 1665 aa11.63□□□□□ -0.55
LIMCH1-219ENST00000514096 ZNF518AQ6AHZ1 1483 aa11.63□□□□□ -0.55
LIMCH1-219ENST00000514096 GLI2P10070 1586 aa11.63□□□□□ -0.55
LIMCH1-219ENST00000514096 ZNF326Q5BKZ1 582 aaKnown RBP11.63□□□□□ -0.55
LIMCH1-219ENST00000514096 MYOM3Q5VTT5 1437 aa11.62□□□□□ -0.55
LIMCH1-219ENST00000514096 CAMSAP2Q08AD1 1489 aa11.62□□□□□ -0.55
LIMCH1-219ENST00000514096 PCGF6Q9BYE7 350 aa11.62□□□□□ -0.55
LIMCH1-219ENST00000514096 KIF15Q9NS87 1388 aa11.61□□□□□ -0.55
LIMCH1-219ENST00000514096 NCKAP5LQ9HCH0 1330 aa11.61□□□□□ -0.55
LIMCH1-219ENST00000514096 MYO5CQ9NQX4 1742 aa11.61□□□□□ -0.55
LIMCH1-219ENST00000514096 PPP1R15AO75807 674 aaPredicted RBP11.61□□□□□ -0.55
LIMCH1-219ENST00000514096 ZFYVE16Q7Z3T8 1539 aa11.61□□□□□ -0.55
LIMCH1-219ENST00000514096 EHBP1L1Q8N3D4 1523 aa11.6□□□□□ -0.55
LIMCH1-219ENST00000514096 ATP10AO60312 1499 aa11.59□□□□□ -0.55
LIMCH1-219ENST00000514096 FGD6Q6ZV73 1430 aa11.59□□□□□ -0.55
LIMCH1-219ENST00000514096 C9orf84Q5VXU9 1444 aa11.58□□□□□ -0.56
LIMCH1-219ENST00000514096 PIP4K2BP78356 416 aa11.57□□□□□ -0.56
LIMCH1-219ENST00000514096 SLC4A1APQ9BWU0 796 aaKnown RBP11.57□□□□□ -0.56
LIMCH1-219ENST00000514096 SLC26A8Q96RN1 970 aa11.57□□□□□ -0.56
LIMCH1-219ENST00000514096 SAMD9LQ8IVG5 1584 aa11.57□□□□□ -0.56
LIMCH1-219ENST00000514096 PLEKHH2Q8IVE3 1493 aa11.57□□□□□ -0.56
LIMCH1-219ENST00000514096 SUPT6HQ7KZ85 1726 aaKnown RBP11.57□□□□□ -0.56
LIMCH1-219ENST00000514096 CDC42BPBQ9Y5S2 1711 aa11.57□□□□□ -0.56
LIMCH1-219ENST00000514096 ARAP3Q8WWN8 1544 aa11.57□□□□□ -0.56
LIMCH1-219ENST00000514096 ZMYM3Q14202 1370 aa11.56□□□□□ -0.56
LIMCH1-219ENST00000514096 C14orf37Q86TY3 774 aa11.56□□□□□ -0.56
LIMCH1-219ENST00000514096 NUP155O75694 1391 aa11.56□□□□□ -0.56
LIMCH1-219ENST00000514096 ANKRD30AQ9BXX3 1397 aa11.55□□□□□ -0.56
LIMCH1-219ENST00000514096 A2MP01023 1474 aa11.55□□□□□ -0.56
LIMCH1-219ENST00000514096 PTPRMP28827 1452 aa11.55□□□□□ -0.56
LIMCH1-219ENST00000514096 NEUROD1Q13562 356 aa11.55□□□□□ -0.56
LIMCH1-219ENST00000514096 CDC42BPAQ5VT25 1732 aa11.55□□□□□ -0.56
LIMCH1-219ENST00000514096 RSPH4AQ5TD94 716 aa11.55□□□□□ -0.56
LIMCH1-219ENST00000514096 KDM2AQ9Y2K7 1162 aa11.55□□□□□ -0.56
LIMCH1-219ENST00000514096 CCDC141Q6ZP82 1450 aa11.54□□□□□ -0.56
LIMCH1-219ENST00000514096 ABCC5O15440 1437 aa11.53□□□□□ -0.56
LIMCH1-219ENST00000514096 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.52□□□□□ -0.56
LIMCH1-219ENST00000514096 MADDQ8WXG6 1647 aa11.52□□□□□ -0.57
LIMCH1-219ENST00000514096 ABCC1P33527 1531 aa11.51□□□□□ -0.57
LIMCH1-219ENST00000514096 DHX29Q7Z478 1369 aaKnown RBP11.51□□□□□ -0.57
LIMCH1-219ENST00000514096 PKD2Q13563 968 aa11.51□□□□□ -0.57
LIMCH1-219ENST00000514096 TXNDC2Q86VQ3 553 aa11.51□□□□□ -0.57
LIMCH1-219ENST00000514096 RIMS1Q86UR5 1692 aaKnown RBP11.51□□□□□ -0.57
LIMCH1-219ENST00000514096 NUTM2FA1L443 756 aa11.51□□□□□ -0.57
LIMCH1-219ENST00000514096 ATP7AQ04656 1500 aa11.5□□□□□ -0.57
LIMCH1-219ENST00000514096 MBD5Q9P267 1494 aa11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms