RNA–Protein interactions for RNA: ENST00000513988.1

CLDND1-229, Transcript of claudin domain containing 1, humanhuman

TSL 2

Gene CLDND1, Length 598 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDND1-229ENST00000513988 SIGLEC1Q9BZZ2 1709 aa13.9□□□□□ -0.18
CLDND1-229ENST00000513988 KIF27Q86VH2 1401 aa13.9□□□□□ -0.19
CLDND1-229ENST00000513988 SETD1BQ9UPS6 1966 aaKnown RBP13.89□□□□□ -0.19
CLDND1-229ENST00000513988 DENND4BO75064 1496 aaPredicted RBP13.88□□□□□ -0.19
CLDND1-229ENST00000513988 PIP4K2BP78356 416 aa13.88□□□□□ -0.19
CLDND1-229ENST00000513988 ZFYVE16Q7Z3T8 1539 aa13.87□□□□□ -0.19
CLDND1-229ENST00000513988 ABCA8O94911 1581 aa13.87□□□□□ -0.19
CLDND1-229ENST00000513988 ZNF335Q9H4Z2 1342 aaPredicted RBP13.87□□□□□ -0.19
CLDND1-229ENST00000513988 RICTORQ6R327 1708 aa13.87□□□□□ -0.19
CLDND1-229ENST00000513988 ARHGEF12Q9NZN5 1544 aa13.86□□□□□ -0.19
CLDND1-229ENST00000513988 NCBP3Q53F19 620 aaKnown RBP13.86□□□□□ -0.19
CLDND1-229ENST00000513988 EFCAB5A4FU69 1503 aa13.85□□□□□ -0.19
CLDND1-229ENST00000513988 NCOA1Q15788 1441 aa13.85□□□□□ -0.19
CLDND1-229ENST00000513988 FHOD3Q2V2M9 1422 aa13.84□□□□□ -0.19
CLDND1-229ENST00000513988 ZMYM4Q5VZL5 1548 aa13.82□□□□□ -0.2
CLDND1-229ENST00000513988 ARID3CA6NKF2 412 aa13.81□□□□□ -0.2
CLDND1-229ENST00000513988 TOM1O60784 492 aa13.8□□□□□ -0.2
CLDND1-229ENST00000513988 MAGI2Q86UL8 1455 aa13.79□□□□□ -0.2
CLDND1-229ENST00000513988 NPM3O75607 178 aaKnown RBP13.77□□□□□ -0.21
CLDND1-229ENST00000513988 RGS17Q9UGC6 210 aaPredicted RBP13.76□□□□□ -0.21
CLDND1-229ENST00000513988 ATP10BO94823 1461 aa13.75□□□□□ -0.21
CLDND1-229ENST00000513988 CAMSAP1Q5T5Y3 1602 aa13.75□□□□□ -0.21
CLDND1-229ENST00000513988 GOLGA3Q08378 1498 aa13.74□□□□□ -0.21
CLDND1-229ENST00000513988 NCKAP5LQ9HCH0 1330 aa13.73□□□□□ -0.21
CLDND1-229ENST00000513988 HECW1Q76N89 1606 aa13.73□□□□□ -0.21
CLDND1-229ENST00000513988 CFAP74Q9C0B2 1584 aa13.73□□□□□ -0.21
CLDND1-229ENST00000513988 ATP10AO60312 1499 aa13.73□□□□□ -0.21
CLDND1-229ENST00000513988 C9orf84Q5VXU9 1444 aa13.73□□□□□ -0.21
CLDND1-229ENST00000513988 TRAPPC8Q9Y2L5 1435 aa13.72□□□□□ -0.21
CLDND1-229ENST00000513988 SRCAPQ6ZRS2 3230 aa13.71□□□□□ -0.21
CLDND1-229ENST00000513988 C3P01024 1663 aa13.71□□□□□ -0.21
CLDND1-229ENST00000513988 FAM9AQ8IZU1 332 aaPredicted RBP13.7□□□□□ -0.22
CLDND1-229ENST00000513988 POTEAQ6S8J7 498 aa13.67□□□□□ -0.22
CLDND1-229ENST00000513988 ESF1Q9H501 851 aaKnown RBP13.67□□□□□ -0.22
CLDND1-229ENST00000513988 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.66□□□□□ -0.22
CLDND1-229ENST00000513988 PKD2Q13563 968 aa13.66□□□□□ -0.22
CLDND1-229ENST00000513988 HNRNPUL2Q1KMD3 747 aaKnown RBP13.66□□□□□ -0.22
CLDND1-229ENST00000513988 RAPGEF2Q9Y4G8 1499 aa13.66□□□□□ -0.22
CLDND1-229ENST00000513988 KCNA4P22459 653 aa13.65□□□□□ -0.22
CLDND1-229ENST00000513988 CACNB1Q02641 598 aaPredicted RBP13.65□□□□□ -0.22
CLDND1-229ENST00000513988 PTPRKQ15262 1439 aa13.64□□□□□ -0.23
CLDND1-229ENST00000513988 SETD1AO15047 1707 aaKnown RBP13.64□□□□□ -0.23
CLDND1-229ENST00000513988 RNF39Q9H2S5 420 aa13.63□□□□□ -0.23
CLDND1-229ENST00000513988 CPS1P31327 1500 aa13.63□□□□□ -0.23
CLDND1-229ENST00000513988 SCAPERQ9BY12 1400 aa13.61□□□□□ -0.23
CLDND1-229ENST00000513988 PLA2R1Q13018 1463 aa13.61□□□□□ -0.23
CLDND1-229ENST00000513988 CTTNBP2Q8WZ74 1663 aa13.6□□□□□ -0.23
CLDND1-229ENST00000513988 TCOF1Q13428 1488 aaKnown RBP13.59□□□□□ -0.23
CLDND1-229ENST00000513988 UPF1Q92900 1129 aaKnown RBP eCLIP13.58□□□□□ -0.24
CLDND1-229ENST00000513988 ALKQ9UM73 1620 aa13.57□□□□□ -0.24
CLDND1-229ENST00000513988 NPATQ14207 1427 aa13.57□□□□□ -0.24
CLDND1-229ENST00000513988 SUPT6HQ7KZ85 1726 aaKnown RBP13.56□□□□□ -0.24
CLDND1-229ENST00000513988 SHANK2Q9UPX8 1470 aa13.55□□□□□ -0.24
CLDND1-229ENST00000513988 CNTLNQ9NXG0 1405 aa13.55□□□□□ -0.24
CLDND1-229ENST00000513988 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.54□□□□□ -0.24
CLDND1-229ENST00000513988 PLEKHD1A6NEE1 506 aa13.53□□□□□ -0.24
CLDND1-229ENST00000513988 MYT1LQ9UL68 1186 aa13.53□□□□□ -0.24
CLDND1-229ENST00000513988 RAPGEF6Q8TEU7 1601 aa13.53□□□□□ -0.24
CLDND1-229ENST00000513988 P3H3Q8IVL6 736 aa13.52□□□□□ -0.25
CLDND1-229ENST00000513988 AGLP35573 1532 aa13.52□□□□□ -0.25
CLDND1-229ENST00000513988 ZNF142P52746 1687 aaPredicted RBP13.52□□□□□ -0.25
CLDND1-229ENST00000513988 REREQ9P2R6 1566 aa13.5□□□□□ -0.25
CLDND1-229ENST00000513988 MYO3AQ8NEV4 1616 aa13.5□□□□□ -0.25
CLDND1-229ENST00000513988 CEP170BQ9Y4F5 1589 aaPredicted RBP13.49□□□□□ -0.25
CLDND1-229ENST00000513988 DIP2CQ9Y2E4 1556 aa13.49□□□□□ -0.25
CLDND1-229ENST00000513988 ZNF518AQ6AHZ1 1483 aa13.48□□□□□ -0.25
CLDND1-229ENST00000513988 MROH2AA6NES4 1674 aa13.47□□□□□ -0.25
CLDND1-229ENST00000513988 SUPT5HO00267 1087 aaKnown RBP13.46□□□□□ -0.25
CLDND1-229ENST00000513988 NUP153P49790 1475 aaKnown RBP13.46□□□□□ -0.25
CLDND1-229ENST00000513988 PLCH2O75038 1416 aa13.45□□□□□ -0.26
CLDND1-229ENST00000513988 ZMYM3Q14202 1370 aa13.45□□□□□ -0.26
CLDND1-229ENST00000513988 RNF17Q9BXT8 1623 aaKnown RBP13.44□□□□□ -0.26
CLDND1-229ENST00000513988 KDM5CP41229 1560 aa13.43□□□□□ -0.26
CLDND1-229ENST00000513988 EFCAB2Q5VUJ9 269 aa13.43□□□□□ -0.26
CLDND1-229ENST00000513988 AFAP1Q8N556 730 aa13.43□□□□□ -0.26
CLDND1-229ENST00000513988 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.43□□□□□ -0.26
CLDND1-229ENST00000513988 ABCA6Q8N139 1617 aa13.42□□□□□ -0.26
CLDND1-229ENST00000513988 POLR1AO95602 1720 aaPredicted RBP13.42□□□□□ -0.26
CLDND1-229ENST00000513988 VWDEQ8N2E2 1590 aa13.42□□□□□ -0.26
CLDND1-229ENST00000513988 NEURL4Q96JN8 1562 aa13.41□□□□□ -0.26
CLDND1-229ENST00000513988 TRIM52Q96A61 297 aa13.4□□□□□ -0.26
CLDND1-229ENST00000513988 LRRC7Q96NW7 1537 aa13.38□□□□□ -0.27
CLDND1-229ENST00000513988 A2ML1A8K2U0 1454 aa13.37□□□□□ -0.27
CLDND1-229ENST00000513988 C1QBPQ07021 282 aaKnown RBP13.37□□□□□ -0.27
CLDND1-229ENST00000513988 MLH3Q9UHC1 1453 aa13.36□□□□□ -0.27
CLDND1-229ENST00000513988 DNMT1P26358 1616 aaKnown RBP13.36□□□□□ -0.27
CLDND1-229ENST00000513988 MYO5CQ9NQX4 1742 aa13.35□□□□□ -0.27
CLDND1-229ENST00000513988 SYNMO15061 1565 aa13.34□□□□□ -0.27
CLDND1-229ENST00000513988 CLTCQ00610 1675 aaKnown RBP13.34□□□□□ -0.27
CLDND1-229ENST00000513988 ANKLE2Q86XL3 938 aa13.33□□□□□ -0.28
CLDND1-229ENST00000513988 SAMD9Q5K651 1589 aa13.32□□□□□ -0.28
CLDND1-229ENST00000513988 NPHP4O75161 1426 aaPredicted RBP13.31□□□□□ -0.28
CLDND1-229ENST00000513988 FAM135BQ49AJ0 1406 aa13.3□□□□□ -0.28
CLDND1-229ENST00000513988 STRCP1A6NGW2 1772 aa13.3□□□□□ -0.28
CLDND1-229ENST00000513988 ARHGAP5Q13017 1502 aa13.3□□□□□ -0.28
CLDND1-229ENST00000513988 ZNF772Q68DY9 489 aaPredicted RBP13.3□□□□□ -0.28
CLDND1-229ENST00000513988 ZRANB1Q9UGI0 708 aa13.3□□□□□ -0.28
CLDND1-229ENST00000513988 RXRBP28702 533 aa13.27□□□□□ -0.29
CLDND1-229ENST00000513988 MED14O60244 1454 aa13.27□□□□□ -0.29
CLDND1-229ENST00000513988 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 63.5 ms