RNA–Protein interactions for RNA: ENST00000513988.1

CLDND1-229, Transcript of claudin domain containing 1, humanhuman

TSL 2

Gene CLDND1, Length 598 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDND1-229ENST00000513988 AEBP2Q6ZN18 517 aaPredicted RBP21.67■■□□□ 1.06
CLDND1-229ENST00000513988 CHIC1Q5VXU3 224 aa20.57■□□□□ 0.88
CLDND1-229ENST00000513988 NISCHQ9Y2I1 1504 aa20.23■□□□□ 0.83
CLDND1-229ENST00000513988 ABCC9O60706 1549 aa19.7■□□□□ 0.74
CLDND1-229ENST00000513988 DNAJC5BQ9UF47 199 aa19.39■□□□□ 0.69
CLDND1-229ENST00000513988 CCDC180Q9P1Z9 1646 aa18.63■□□□□ 0.57
CLDND1-229ENST00000513988 DNAJC5Q9H3Z4 198 aa18.62■□□□□ 0.57
CLDND1-229ENST00000513988 SENP3Q9H4L4 574 aaPredicted RBP18.31■□□□□ 0.52
CLDND1-229ENST00000513988 RB1CC1Q8TDY2 1594 aa18.27■□□□□ 0.52
CLDND1-229ENST00000513988 PABPN1Q86U42 306 aaKnown RBP eCLIP18.17■□□□□ 0.5
CLDND1-229ENST00000513988 PHF23Q9BUL5 403 aaPredicted RBP18.17■□□□□ 0.5
CLDND1-229ENST00000513988 NACADO15069 1562 aa17.87■□□□□ 0.45
CLDND1-229ENST00000513988 CECR2Q9BXF3 1484 aa17.86■□□□□ 0.45
CLDND1-229ENST00000513988 UNC13AQ9UPW8 1703 aa17.81■□□□□ 0.44
CLDND1-229ENST00000513988 BICRAQ9NZM4 1560 aa17.74■□□□□ 0.43
CLDND1-229ENST00000513988 CC2D2AQ9P2K1 1620 aa17.72■□□□□ 0.43
CLDND1-229ENST00000513988 DCAF8L2P0C7V8 631 aa17.61■□□□□ 0.41
CLDND1-229ENST00000513988 EIF4G1Q04637 1599 aaKnown RBP17.42■□□□□ 0.38
CLDND1-229ENST00000513988 CUX2O14529 1486 aa17.42■□□□□ 0.38
CLDND1-229ENST00000513988 SHROOM4Q9ULL8 1493 aa17.42■□□□□ 0.38
CLDND1-229ENST00000513988 TRIM41Q8WV44 630 aa17.41■□□□□ 0.38
CLDND1-229ENST00000513988 MYO15BQ96JP2 1530 aa17.25■□□□□ 0.35
CLDND1-229ENST00000513988 FOXD1Q16676 465 aa17.16■□□□□ 0.34
CLDND1-229ENST00000513988 ERCC6Q03468 1493 aa17.12■□□□□ 0.33
CLDND1-229ENST00000513988 SCRIBQ14160 1630 aa16.94■□□□□ 0.3
CLDND1-229ENST00000513988 DCAF1Q9Y4B6 1507 aa16.64■□□□□ 0.25
CLDND1-229ENST00000513988 THOC2Q8NI27 1593 aaKnown RBP16.64■□□□□ 0.25
CLDND1-229ENST00000513988 NESP48681 1621 aa16.59■□□□□ 0.25
CLDND1-229ENST00000513988 ZCCHC6Q5VYS8 1495 aaKnown RBP16.54■□□□□ 0.24
CLDND1-229ENST00000513988 NCAPD3P42695 1498 aa16.5■□□□□ 0.23
CLDND1-229ENST00000513988 SMARCA2P51531 1590 aa16.48■□□□□ 0.23
CLDND1-229ENST00000513988 OSCARQ8IYS5 282 aa16.45■□□□□ 0.22
CLDND1-229ENST00000513988 BAZ1AQ9NRL2 1556 aaPredicted RBP16.44■□□□□ 0.22
CLDND1-229ENST00000513988 PLPPR3Q6T4P5 718 aa16.43■□□□□ 0.22
CLDND1-229ENST00000513988 TRHP20396 242 aaPredicted RBP16.35■□□□□ 0.21
CLDND1-229ENST00000513988 RIMBP3CA6NJZ7 1639 aa16.34■□□□□ 0.21
CLDND1-229ENST00000513988 RIMBP3BA6NNM3 1639 aa16.34■□□□□ 0.21
CLDND1-229ENST00000513988 RIMBP3Q9UFD9 1639 aa16.34■□□□□ 0.21
CLDND1-229ENST00000513988 KIF21AQ7Z4S6 1674 aa16.34■□□□□ 0.21
CLDND1-229ENST00000513988 LAMC3Q9Y6N6 1575 aa16.31■□□□□ 0.2
CLDND1-229ENST00000513988 ATAD2BQ9ULI0 1458 aa16.31■□□□□ 0.2
CLDND1-229ENST00000513988 HMGXB3Q12766 1538 aa16.29■□□□□ 0.2
CLDND1-229ENST00000513988 PDS5BQ9NTI5 1447 aa16.28■□□□□ 0.2
CLDND1-229ENST00000513988 MRC2Q9UBG0 1479 aa16.2■□□□□ 0.18
CLDND1-229ENST00000513988 PPP6R1Q9UPN7 881 aa16.19■□□□□ 0.18
CLDND1-229ENST00000513988 ARHGEF11O15085 1522 aa16.19■□□□□ 0.18
CLDND1-229ENST00000513988 WDR62O43379 1518 aa16.17■□□□□ 0.18
CLDND1-229ENST00000513988 CYB5RLQ6IPT4 315 aa16.15■□□□□ 0.18
CLDND1-229ENST00000513988 ILDR1Q86SU0 546 aaPredicted RBP16.14■□□□□ 0.17
CLDND1-229ENST00000513988 ADRA2BP18089 450 aa16.13■□□□□ 0.17
CLDND1-229ENST00000513988 BAZ1BQ9UIG0 1483 aaKnown RBP16.11■□□□□ 0.17
CLDND1-229ENST00000513988 PIAS4Q8N2W9 510 aaPredicted RBP16.03■□□□□ 0.16
CLDND1-229ENST00000513988 SMARCA4P51532 1647 aa16.01■□□□□ 0.15
CLDND1-229ENST00000513988 CADPSQ9ULU8 1353 aa15.96■□□□□ 0.15
CLDND1-229ENST00000513988 ARAP1Q96P48 1450 aa15.95■□□□□ 0.14
CLDND1-229ENST00000513988 CEP164Q9UPV0 1460 aa15.92■□□□□ 0.14
CLDND1-229ENST00000513988 MSH5O43196 834 aa15.89■□□□□ 0.13
CLDND1-229ENST00000513988 PEG3Q9GZU2 1588 aa15.85■□□□□ 0.13
CLDND1-229ENST00000513988 FANCD2Q9BXW9 1451 aa15.8■□□□□ 0.12
CLDND1-229ENST00000513988 RSF1Q96T23 1441 aaPredicted RBP15.75■□□□□ 0.11
CLDND1-229ENST00000513988 URB2Q14146 1524 aaKnown RBP15.72■□□□□ 0.11
CLDND1-229ENST00000513988 ZNF608Q9ULD9 1512 aaPredicted RBP15.7■□□□□ 0.1
CLDND1-229ENST00000513988 CHD1O14646 1710 aa15.65■□□□□ 0.1
CLDND1-229ENST00000513988 IFT140Q96RY7 1462 aa15.64■□□□□ 0.09
CLDND1-229ENST00000513988 FBLN2P98095 1184 aa15.6■□□□□ 0.09
CLDND1-229ENST00000513988 MROH2BQ7Z745 1585 aa15.58■□□□□ 0.08
CLDND1-229ENST00000513988 EIF4G3O43432 1585 aaKnown RBP15.57■□□□□ 0.08
CLDND1-229ENST00000513988 CFTRP13569 1480 aa15.54■□□□□ 0.08
CLDND1-229ENST00000513988 KDM4FA0A1W2PPD8 638 aa15.49■□□□□ 0.07
CLDND1-229ENST00000513988 POTEDQ86YR6 584 aa15.45■□□□□ 0.06
CLDND1-229ENST00000513988 CLASP1Q7Z460 1538 aa15.44■□□□□ 0.06
CLDND1-229ENST00000513988 AQRO60306 1485 aaKnown RBP eCLIP15.44■□□□□ 0.06
CLDND1-229ENST00000513988 GAPVD1Q14C86 1478 aa15.4■□□□□ 0.06
CLDND1-229ENST00000513988 TOPBP1Q92547 1522 aa15.37■□□□□ 0.05
CLDND1-229ENST00000513988 FBXO41Q8TF61 875 aa15.36■□□□□ 0.05
CLDND1-229ENST00000513988 SYNJ1O43426 1573 aa15.36■□□□□ 0.05
CLDND1-229ENST00000513988 ERCC6L2Q5T890 1561 aa15.36■□□□□ 0.05
CLDND1-229ENST00000513988 WIZO95785 1651 aa15.34■□□□□ 0.05
CLDND1-229ENST00000513988 LMTK3Q96Q04 1460 aa15.31■□□□□ 0.04
CLDND1-229ENST00000513988 TARBP1Q13395 1621 aaKnown RBP15.3■□□□□ 0.04
CLDND1-229ENST00000513988 KIF13AQ9H1H9 1805 aa15.3■□□□□ 0.04
CLDND1-229ENST00000513988 PRDM2Q13029 1718 aa15.29■□□□□ 0.04
CLDND1-229ENST00000513988 CHMP7Q8WUX9 453 aaPredicted RBP15.29■□□□□ 0.04
CLDND1-229ENST00000513988 ABCC8Q09428 1581 aa15.28■□□□□ 0.04
CLDND1-229ENST00000513988 HECW2Q9P2P5 1572 aa15.27■□□□□ 0.03
CLDND1-229ENST00000513988 SNAPC4Q5SXM2 1469 aa15.25■□□□□ 0.03
CLDND1-229ENST00000513988 DNMBPQ6XZF7 1577 aa15.22■□□□□ 0.03
CLDND1-229ENST00000513988 SOCS7O14512 581 aa15.2■□□□□ 0.02
CLDND1-229ENST00000513988 KDM6BO15054 1643 aa15.19■□□□□ 0.02
CLDND1-229ENST00000513988 TDRD9Q8NDG6 1382 aaKnown RBP15.18■□□□□ 0.02
CLDND1-229ENST00000513988 MAGI1Q96QZ7 1491 aaPredicted RBP15.16■□□□□ 0.02
CLDND1-229ENST00000513988 FAM69CQ0P6D2 419 aa15.15■□□□□ 0.02
CLDND1-229ENST00000513988 POLA1P09884 1462 aaPredicted RBP15.14■□□□□ 0.01
CLDND1-229ENST00000513988 SYNJ2O15056 1496 aa15.13■□□□□ 0.01
CLDND1-229ENST00000513988 ADGRL1O94910 1474 aa15.13■□□□□ 0.01
CLDND1-229ENST00000513988 RAD54L2Q9Y4B4 1467 aa15.1■□□□□ 0.01
CLDND1-229ENST00000513988 ABCC10Q5T3U5 1492 aa15.08■□□□□ 0.01
CLDND1-229ENST00000513988 TOP2AP11388 1531 aaKnown RBP15.08■□□□□ 0.01
CLDND1-229ENST00000513988 WDR97A6NE52 1622 aa15.07■□□□□ 0
CLDND1-229ENST00000513988 ILDR2Q71H61 639 aa15.07■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms