RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 CFAP74Q9C0B2 1584 aa23.16■■□□□ 1.3
NUP54-213ENST00000513352 FANCAO15360 1455 aa23.16■■□□□ 1.3
NUP54-213ENST00000513352 GPATCH8Q9UKJ3 1502 aaKnown RBP23.15■■□□□ 1.3
NUP54-213ENST00000513352 ARAP3Q8WWN8 1544 aa23.13■■□□□ 1.29
NUP54-213ENST00000513352 EFCAB2Q5VUJ9 269 aa23.13■■□□□ 1.29
NUP54-213ENST00000513352 CFDP1Q9UEE9 299 aaPredicted RBP23.13■■□□□ 1.29
NUP54-213ENST00000513352 ZNF777Q9ULD5 760 aaPredicted RBP23.13■■□□□ 1.29
NUP54-213ENST00000513352 MYOM3Q5VTT5 1437 aa23.1■■□□□ 1.29
NUP54-213ENST00000513352 PHLDB1Q86UU1 1377 aa23.1■■□□□ 1.29
NUP54-213ENST00000513352 NEO1Q92859 1461 aa23.1■■□□□ 1.29
NUP54-213ENST00000513352 AKNAQ7Z591 1439 aa23.08■■□□□ 1.28
NUP54-213ENST00000513352 ADGRL1O94910 1474 aa23.05■■□□□ 1.28
NUP54-213ENST00000513352 KDM6BO15054 1643 aa23.04■■□□□ 1.28
NUP54-213ENST00000513352 SAMD9LQ8IVG5 1584 aa23.04■■□□□ 1.28
NUP54-213ENST00000513352 FGD6Q6ZV73 1430 aa23.01■■□□□ 1.27
NUP54-213ENST00000513352 CAMSAP2Q08AD1 1489 aa23.01■■□□□ 1.27
NUP54-213ENST00000513352 ZNF644Q9H582 1327 aaPredicted RBP23.01■■□□□ 1.27
NUP54-213ENST00000513352 MIA2Q96PC5 1412 aa23■■□□□ 1.27
NUP54-213ENST00000513352 SCAPERQ9BY12 1400 aa23■■□□□ 1.27
NUP54-213ENST00000513352 ABCC1P33527 1531 aa23■■□□□ 1.27
NUP54-213ENST00000513352 PTPN23Q9H3S7 1636 aa23■■□□□ 1.27
NUP54-213ENST00000513352 SYCP2Q9BX26 1530 aa22.99■■□□□ 1.27
NUP54-213ENST00000513352 PLEKHH2Q8IVE3 1493 aa22.98■■□□□ 1.27
NUP54-213ENST00000513352 DENND4BO75064 1496 aaPredicted RBP22.98■■□□□ 1.27
NUP54-213ENST00000513352 HNRNPMP52272 730 aaKnown RBP eCLIP22.95■■□□□ 1.26
NUP54-213ENST00000513352 FAM50AQ14320 339 aaKnown RBP22.95■■□□□ 1.26
NUP54-213ENST00000513352 COL17A1Q9UMD9 1497 aaPredicted RBP22.94■■□□□ 1.26
NUP54-213ENST00000513352 RAPGEF3O95398 923 aa22.94■■□□□ 1.26
NUP54-213ENST00000513352 ARHGEF12Q9NZN5 1544 aa22.93■■□□□ 1.26
NUP54-213ENST00000513352 POGZQ7Z3K3 1410 aa22.92■■□□□ 1.26
NUP54-213ENST00000513352 RICTORQ6R327 1708 aa22.92■■□□□ 1.26
NUP54-213ENST00000513352 KIAA1107Q9UPP5 1409 aa22.91■■□□□ 1.26
NUP54-213ENST00000513352 FRMPD1Q5SYB0 1578 aa22.91■■□□□ 1.26
NUP54-213ENST00000513352 TRAPPC8Q9Y2L5 1435 aa22.91■■□□□ 1.26
NUP54-213ENST00000513352 TCOF1Q13428 1488 aaKnown RBP22.9■■□□□ 1.26
NUP54-213ENST00000513352 ZNF518AQ6AHZ1 1483 aa22.9■■□□□ 1.26
NUP54-213ENST00000513352 MYT1LQ9UL68 1186 aa22.89■■□□□ 1.25
NUP54-213ENST00000513352 AFAP1Q8N556 730 aa22.87■■□□□ 1.25
NUP54-213ENST00000513352 CCDC141Q6ZP82 1450 aa22.86■■□□□ 1.25
NUP54-213ENST00000513352 MBD5Q9P267 1494 aa22.85■■□□□ 1.25
NUP54-213ENST00000513352 ARHGEF5Q12774 1597 aa22.85■■□□□ 1.25
NUP54-213ENST00000513352 RRBP1Q9P2E9 1410 aaKnown RBP22.84■■□□□ 1.25
NUP54-213ENST00000513352 KDM5CP41229 1560 aa22.83■■□□□ 1.25
NUP54-213ENST00000513352 DNMT1P26358 1616 aaKnown RBP22.82■■□□□ 1.24
NUP54-213ENST00000513352 ZMYM4Q5VZL5 1548 aa22.82■■□□□ 1.24
NUP54-213ENST00000513352 SPAG9O60271 1321 aaKnown RBP22.82■■□□□ 1.24
NUP54-213ENST00000513352 HECW2Q9P2P5 1572 aa22.81■■□□□ 1.24
NUP54-213ENST00000513352 RSPH4AQ5TD94 716 aa22.81■■□□□ 1.24
NUP54-213ENST00000513352 ITGAEP38570 1179 aa22.8■■□□□ 1.24
NUP54-213ENST00000513352 DAPK1P53355 1430 aa22.8■■□□□ 1.24
NUP54-213ENST00000513352 CROCC2H7BZ55 1655 aa22.8■■□□□ 1.24
NUP54-213ENST00000513352 TSPY4P0CV99 314 aa22.79■■□□□ 1.24
NUP54-213ENST00000513352 TSPY10P0CW01 314 aa22.79■■□□□ 1.24
NUP54-213ENST00000513352 ZFYVE16Q7Z3T8 1539 aa22.78■■□□□ 1.24
NUP54-213ENST00000513352 ABCC5O15440 1437 aa22.77■■□□□ 1.24
NUP54-213ENST00000513352 ATP7AQ04656 1500 aa22.77■■□□□ 1.24
NUP54-213ENST00000513352 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.76■■□□□ 1.23
NUP54-213ENST00000513352 INO80Q9ULG1 1556 aaPredicted RBP22.76■■□□□ 1.23
NUP54-213ENST00000513352 C9orf84Q5VXU9 1444 aa22.75■■□□□ 1.23
NUP54-213ENST00000513352 ARHGEF40Q8TER5 1519 aa22.75■■□□□ 1.23
NUP54-213ENST00000513352 KIDINS220Q9ULH0 1771 aa22.75■■□□□ 1.23
NUP54-213ENST00000513352 YEATS2Q9ULM3 1422 aa22.74■■□□□ 1.23
NUP54-213ENST00000513352 MAGI2Q86UL8 1455 aa22.74■■□□□ 1.23
NUP54-213ENST00000513352 MLH3Q9UHC1 1453 aa22.74■■□□□ 1.23
NUP54-213ENST00000513352 CHIC2Q9UKJ5 165 aa22.73■■□□□ 1.23
NUP54-213ENST00000513352 SHANK2Q9UPX8 1470 aa22.73■■□□□ 1.23
NUP54-213ENST00000513352 MAST1Q9Y2H9 1570 aa22.72■■□□□ 1.23
NUP54-213ENST00000513352 ABCA6Q8N139 1617 aa22.71■■□□□ 1.23
NUP54-213ENST00000513352 RTEL1-TNFRSF6BF6WH68 1400 aa22.7■■□□□ 1.22
NUP54-213ENST00000513352 ADGBQ8N7X0 1667 aa22.69■■□□□ 1.22
NUP54-213ENST00000513352 DIP2CQ9Y2E4 1556 aa22.69■■□□□ 1.22
NUP54-213ENST00000513352 PTPRKQ15262 1439 aa22.65■■□□□ 1.22
NUP54-213ENST00000513352 ANKRD30AQ9BXX3 1397 aa22.65■■□□□ 1.22
NUP54-213ENST00000513352 PLXNC1O60486 1568 aa22.65■■□□□ 1.22
NUP54-213ENST00000513352 ATP10AO60312 1499 aa22.65■■□□□ 1.22
NUP54-213ENST00000513352 RRP7BPQ9NSQ0 103 aa22.64■■□□□ 1.21
NUP54-213ENST00000513352 KIF15Q9NS87 1388 aa22.62■■□□□ 1.21
NUP54-213ENST00000513352 ARID4BQ4LE39 1312 aaPredicted RBP22.61■■□□□ 1.21
NUP54-213ENST00000513352 ADGRL2O95490 1459 aa22.6■■□□□ 1.21
NUP54-213ENST00000513352 A2MP01023 1474 aa22.6■■□□□ 1.21
NUP54-213ENST00000513352 NCOA1Q15788 1441 aa22.58■■□□□ 1.21
NUP54-213ENST00000513352 ROCK1Q13464 1354 aa22.57■■□□□ 1.2
NUP54-213ENST00000513352 DUOX2Q9NRD8 1548 aa22.57■■□□□ 1.2
NUP54-213ENST00000513352 REREQ9P2R6 1566 aa22.56■■□□□ 1.2
NUP54-213ENST00000513352 SIGLEC1Q9BZZ2 1709 aa22.56■■□□□ 1.2
NUP54-213ENST00000513352 DHX29Q7Z478 1369 aaKnown RBP22.55■■□□□ 1.2
NUP54-213ENST00000513352 TRIM26Q12899 539 aaPredicted RBP22.53■■□□□ 1.2
NUP54-213ENST00000513352 MLECQ14165 292 aa22.51■■□□□ 1.19
NUP54-213ENST00000513352 ERBINQ96RT1 1412 aa22.49■■□□□ 1.19
NUP54-213ENST00000513352 GCC2Q8IWJ2 1684 aa22.49■■□□□ 1.19
NUP54-213ENST00000513352 AGLP35573 1532 aa22.49■■□□□ 1.19
NUP54-213ENST00000513352 KIF3BO15066 747 aa22.49■■□□□ 1.19
NUP54-213ENST00000513352 ANKRD50Q9ULJ7 1429 aa22.48■■□□□ 1.19
NUP54-213ENST00000513352 EIF2AK4Q9P2K8 1649 aaKnown RBP22.48■■□□□ 1.19
NUP54-213ENST00000513352 BCORL1Q5H9F3 1711 aa22.45■■□□□ 1.19
NUP54-213ENST00000513352 GGT6Q6P531 493 aa22.45■■□□□ 1.18
NUP54-213ENST00000513352 HFM1A2PYH4 1435 aa22.45■■□□□ 1.18
NUP54-213ENST00000513352 NAIPQ13075 1403 aa22.45■■□□□ 1.18
NUP54-213ENST00000513352 RNF17Q9BXT8 1623 aaKnown RBP22.4■■□□□ 1.18
NUP54-213ENST00000513352 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.4■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms