RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 NISCHQ9Y2I1 1504 aa35.47■■■■□ 3.27
NUP54-213ENST00000513352 CCDC180Q9P1Z9 1646 aa31.38■■■□□ 2.61
NUP54-213ENST00000513352 ABCC9O60706 1549 aa30.38■■■□□ 2.45
NUP54-213ENST00000513352 ZCCHC6Q5VYS8 1495 aaKnown RBP29.64■■■□□ 2.34
NUP54-213ENST00000513352 DCAF8L2P0C7V8 631 aa29.62■■■□□ 2.33
NUP54-213ENST00000513352 NACADO15069 1562 aa29.39■■■□□ 2.3
NUP54-213ENST00000513352 RB1CC1Q8TDY2 1594 aa29.37■■■□□ 2.29
NUP54-213ENST00000513352 DCAF1Q9Y4B6 1507 aa29.31■■■□□ 2.28
NUP54-213ENST00000513352 MYO15BQ96JP2 1530 aa29.27■■■□□ 2.28
NUP54-213ENST00000513352 SCRIBQ14160 1630 aa28.76■■■□□ 2.19
NUP54-213ENST00000513352 UNC13AQ9UPW8 1703 aa28.74■■■□□ 2.19
NUP54-213ENST00000513352 PABPN1Q86U42 306 aaKnown RBP eCLIP28.46■■■□□ 2.15
NUP54-213ENST00000513352 BICRAQ9NZM4 1560 aa28.41■■■□□ 2.14
NUP54-213ENST00000513352 SHROOM4Q9ULL8 1493 aa28.41■■■□□ 2.14
NUP54-213ENST00000513352 EIF4G1Q04637 1599 aaKnown RBP27.66■■■□□ 2.02
NUP54-213ENST00000513352 CECR2Q9BXF3 1484 aa27.61■■■□□ 2.01
NUP54-213ENST00000513352 BAZ1AQ9NRL2 1556 aaPredicted RBP27.5■■□□□ 1.99
NUP54-213ENST00000513352 SMARCA4P51532 1647 aa27.48■■□□□ 1.99
NUP54-213ENST00000513352 CC2D2AQ9P2K1 1620 aa27.48■■□□□ 1.99
NUP54-213ENST00000513352 DNAJC5BQ9UF47 199 aa27.43■■□□□ 1.98
NUP54-213ENST00000513352 MROH2BQ7Z745 1585 aa27.38■■□□□ 1.97
NUP54-213ENST00000513352 SMARCA2P51531 1590 aa27.21■■□□□ 1.95
NUP54-213ENST00000513352 ATAD2BQ9ULI0 1458 aa27.19■■□□□ 1.94
NUP54-213ENST00000513352 RSF1Q96T23 1441 aaPredicted RBP27.18■■□□□ 1.94
NUP54-213ENST00000513352 WIZO95785 1651 aa27.14■■□□□ 1.93
NUP54-213ENST00000513352 PEG3Q9GZU2 1588 aa27.13■■□□□ 1.93
NUP54-213ENST00000513352 NCAPD3P42695 1498 aa27.07■■□□□ 1.92
NUP54-213ENST00000513352 BAZ1BQ9UIG0 1483 aaKnown RBP27.05■■□□□ 1.92
NUP54-213ENST00000513352 HMGXB3Q12766 1538 aa27.02■■□□□ 1.92
NUP54-213ENST00000513352 SUPT5HO00267 1087 aaKnown RBP26.92■■□□□ 1.9
NUP54-213ENST00000513352 TOP2AP11388 1531 aaKnown RBP26.85■■□□□ 1.89
NUP54-213ENST00000513352 CCDC88BA6NC98 1476 aa26.51■■□□□ 1.83
NUP54-213ENST00000513352 NESP48681 1621 aa26.39■■□□□ 1.81
NUP54-213ENST00000513352 LAMC3Q9Y6N6 1575 aa26.36■■□□□ 1.81
NUP54-213ENST00000513352 CADPSQ9ULU8 1353 aa26.34■■□□□ 1.81
NUP54-213ENST00000513352 CFTRP13569 1480 aa26.26■■□□□ 1.79
NUP54-213ENST00000513352 ERCC6Q03468 1493 aa26.19■■□□□ 1.78
NUP54-213ENST00000513352 PRDM2Q13029 1718 aa26.19■■□□□ 1.78
NUP54-213ENST00000513352 PDS5BQ9NTI5 1447 aa26.17■■□□□ 1.78
NUP54-213ENST00000513352 KIF21AQ7Z4S6 1674 aa26.12■■□□□ 1.77
NUP54-213ENST00000513352 FANCD2Q9BXW9 1451 aa26.09■■□□□ 1.77
NUP54-213ENST00000513352 CEP164Q9UPV0 1460 aa26.04■■□□□ 1.76
NUP54-213ENST00000513352 MRC2Q9UBG0 1479 aa25.89■■□□□ 1.73
NUP54-213ENST00000513352 THOC2Q8NI27 1593 aaKnown RBP25.89■■□□□ 1.73
NUP54-213ENST00000513352 URB2Q14146 1524 aaKnown RBP25.78■■□□□ 1.72
NUP54-213ENST00000513352 WDR62O43379 1518 aa25.76■■□□□ 1.71
NUP54-213ENST00000513352 ABCC8Q09428 1581 aa25.73■■□□□ 1.71
NUP54-213ENST00000513352 DNMBPQ6XZF7 1577 aa25.72■■□□□ 1.71
NUP54-213ENST00000513352 TOPBP1Q92547 1522 aa25.71■■□□□ 1.71
NUP54-213ENST00000513352 CUX2O14529 1486 aa25.67■■□□□ 1.7
NUP54-213ENST00000513352 CUX1P39880 1505 aa25.67■■□□□ 1.7
NUP54-213ENST00000513352 WRNQ14191 1432 aaPredicted RBP eCLIP25.65■■□□□ 1.7
NUP54-213ENST00000513352 SYNJ1O43426 1573 aa25.58■■□□□ 1.69
NUP54-213ENST00000513352 TOP2BQ02880 1626 aa25.55■■□□□ 1.68
NUP54-213ENST00000513352 BIVM-ERCC5R4GMW8 1640 aa25.55■■□□□ 1.68
NUP54-213ENST00000513352 FGD5Q6ZNL6 1462 aa25.53■■□□□ 1.68
NUP54-213ENST00000513352 POLA1P09884 1462 aaPredicted RBP25.51■■□□□ 1.67
NUP54-213ENST00000513352 IFT140Q96RY7 1462 aa25.44■■□□□ 1.66
NUP54-213ENST00000513352 SOGA1O94964 1423 aa25.42■■□□□ 1.66
NUP54-213ENST00000513352 RAD54L2Q9Y4B4 1467 aa25.41■■□□□ 1.66
NUP54-213ENST00000513352 TARBP1Q13395 1621 aaKnown RBP25.37■■□□□ 1.65
NUP54-213ENST00000513352 TRIM41Q8WV44 630 aa25.36■■□□□ 1.65
NUP54-213ENST00000513352 ZNF608Q9ULD9 1512 aaPredicted RBP25.3■■□□□ 1.64
NUP54-213ENST00000513352 WDR97A6NE52 1622 aa25.29■■□□□ 1.64
NUP54-213ENST00000513352 CHIC1Q5VXU3 224 aa25.28■■□□□ 1.64
NUP54-213ENST00000513352 ABCA10Q8WWZ4 1543 aa25.27■■□□□ 1.64
NUP54-213ENST00000513352 EIF4G3O43432 1585 aaKnown RBP25.25■■□□□ 1.63
NUP54-213ENST00000513352 TDRD9Q8NDG6 1382 aaKnown RBP25.24■■□□□ 1.63
NUP54-213ENST00000513352 AQRO60306 1485 aaKnown RBP eCLIP25.21■■□□□ 1.63
NUP54-213ENST00000513352 ABCA5Q8WWZ7 1642 aa25.15■■□□□ 1.62
NUP54-213ENST00000513352 GAPVD1Q14C86 1478 aa25.15■■□□□ 1.62
NUP54-213ENST00000513352 PBRM1Q86U86 1689 aa25.11■■□□□ 1.61
NUP54-213ENST00000513352 KIF27Q86VH2 1401 aa25.09■■□□□ 1.61
NUP54-213ENST00000513352 GRIN2BQ13224 1484 aa25.08■■□□□ 1.6
NUP54-213ENST00000513352 SNAPC4Q5SXM2 1469 aa25.02■■□□□ 1.6
NUP54-213ENST00000513352 RUSC2Q8N2Y8 1516 aa24.98■■□□□ 1.59
NUP54-213ENST00000513352 ERICH3Q5RHP9 1530 aa24.97■■□□□ 1.59
NUP54-213ENST00000513352 MAGI1Q96QZ7 1491 aaPredicted RBP24.96■■□□□ 1.59
NUP54-213ENST00000513352 FBLN2P98095 1184 aa24.92■■□□□ 1.58
NUP54-213ENST00000513352 ADAMTS12P58397 1594 aa24.9■■□□□ 1.58
NUP54-213ENST00000513352 FAM9AQ8IZU1 332 aaPredicted RBP24.9■■□□□ 1.58
NUP54-213ENST00000513352 IGF1RP08069 1367 aa24.89■■□□□ 1.57
NUP54-213ENST00000513352 CHD1O14646 1710 aa24.89■■□□□ 1.57
NUP54-213ENST00000513352 CUL7Q14999 1698 aa24.87■■□□□ 1.57
NUP54-213ENST00000513352 EEA1Q15075 1411 aa24.86■■□□□ 1.57
NUP54-213ENST00000513352 CHMP7Q8WUX9 453 aaPredicted RBP24.86■■□□□ 1.57
NUP54-213ENST00000513352 SYNJ2O15056 1496 aa24.85■■□□□ 1.57
NUP54-213ENST00000513352 FHAD1B1AJZ9 1412 aa24.85■■□□□ 1.57
NUP54-213ENST00000513352 CARMIL1Q5VZK9 1371 aa24.8■■□□□ 1.56
NUP54-213ENST00000513352 CSRNP3Q8WYN3 585 aa24.77■■□□□ 1.56
NUP54-213ENST00000513352 GRIN2AQ12879 1464 aa24.76■■□□□ 1.55
NUP54-213ENST00000513352 OSCARQ8IYS5 282 aa24.7■■□□□ 1.54
NUP54-213ENST00000513352 RAPGEF2Q9Y4G8 1499 aa24.7■■□□□ 1.54
NUP54-213ENST00000513352 PRXQ9BXM0 1461 aa24.66■■□□□ 1.54
NUP54-213ENST00000513352 CEP170Q5SW79 1584 aa24.63■■□□□ 1.53
NUP54-213ENST00000513352 EHMT2Q96KQ7 1210 aa24.61■■□□□ 1.53
NUP54-213ENST00000513352 KIF21BO75037 1637 aa24.59■■□□□ 1.53
NUP54-213ENST00000513352 NUP160Q12769 1436 aa24.59■■□□□ 1.53
NUP54-213ENST00000513352 CLASP1Q7Z460 1538 aa24.54■■□□□ 1.52
NUP54-213ENST00000513352 GOLGA3Q08378 1498 aa24.51■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms