RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 KCNH8Q96L42 1107 aa13.19□□□□□ -0.3
SCN1A-207ENST00000507401 UBTFP17480 764 aaKnown RBP13.17□□□□□ -0.3
SCN1A-207ENST00000507401 CD109Q6YHK3 1445 aa13.16□□□□□ -0.3
SCN1A-207ENST00000507401 RANGAP1P46060 587 aaPredicted RBP13.16□□□□□ -0.3
SCN1A-207ENST00000507401 EFCAB5A4FU69 1503 aa13.16□□□□□ -0.3
SCN1A-207ENST00000507401 MAGI3Q5TCQ9 1506 aa13.15□□□□□ -0.3
SCN1A-207ENST00000507401 RAPGEF6Q8TEU7 1601 aa13.15□□□□□ -0.3
SCN1A-207ENST00000507401 CFAP43Q8NDM7 1665 aa13.15□□□□□ -0.31
SCN1A-207ENST00000507401 CHRDL2Q6WN34 429 aa13.14□□□□□ -0.31
SCN1A-207ENST00000507401 FHOD3Q2V2M9 1422 aa13.13□□□□□ -0.31
SCN1A-207ENST00000507401 COL17A1Q9UMD9 1497 aaPredicted RBP13.12□□□□□ -0.31
SCN1A-207ENST00000507401 ARID3CA6NKF2 412 aa13.12□□□□□ -0.31
SCN1A-207ENST00000507401 SSUH2Q9Y2M2 353 aa13.12□□□□□ -0.31
SCN1A-207ENST00000507401 NUP153P49790 1475 aaKnown RBP13.11□□□□□ -0.31
SCN1A-207ENST00000507401 PLEKHD1A6NEE1 506 aa13.11□□□□□ -0.31
SCN1A-207ENST00000507401 PHLDB1Q86UU1 1377 aa13.1□□□□□ -0.31
SCN1A-207ENST00000507401 ABCA9Q8IUA7 1624 aa13.07□□□□□ -0.32
SCN1A-207ENST00000507401 KDM4FA0A1W2PPD8 638 aa13.07□□□□□ -0.32
SCN1A-207ENST00000507401 FMN1Q68DA7 1419 aa13.06□□□□□ -0.32
SCN1A-207ENST00000507401 ZNF692Q9BU19 519 aaPredicted RBP13.06□□□□□ -0.32
SCN1A-207ENST00000507401 ARAP3Q8WWN8 1544 aa13.05□□□□□ -0.32
SCN1A-207ENST00000507401 PITPNM1O00562 1244 aa13.05□□□□□ -0.32
SCN1A-207ENST00000507401 ARHGAP35Q9NRY4 1499 aa13.04□□□□□ -0.32
SCN1A-207ENST00000507401 NEO1Q92859 1461 aa13.03□□□□□ -0.32
SCN1A-207ENST00000507401 CDK11AQ9UQ88 783 aaPredicted RBP13.02□□□□□ -0.33
SCN1A-207ENST00000507401 ATP1B4Q9UN42 357 aaPredicted RBP12.98□□□□□ -0.33
SCN1A-207ENST00000507401 HECW1Q76N89 1606 aa12.97□□□□□ -0.33
SCN1A-207ENST00000507401 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.97□□□□□ -0.33
SCN1A-207ENST00000507401 RAPGEF3O95398 923 aa12.96□□□□□ -0.33
SCN1A-207ENST00000507401 CDK13Q14004 1512 aaKnown RBP12.95□□□□□ -0.34
SCN1A-207ENST00000507401 ADGRL1O94910 1474 aa12.95□□□□□ -0.34
SCN1A-207ENST00000507401 AKNAQ7Z591 1439 aa12.94□□□□□ -0.34
SCN1A-207ENST00000507401 FANCAO15360 1455 aa12.93□□□□□ -0.34
SCN1A-207ENST00000507401 PLCH2O75038 1416 aa12.93□□□□□ -0.34
SCN1A-207ENST00000507401 CASKIN1Q8WXD9 1431 aa12.93□□□□□ -0.34
SCN1A-207ENST00000507401 PIP4P2Q8N4L2 257 aa12.92□□□□□ -0.34
SCN1A-207ENST00000507401 CFAP74Q9C0B2 1584 aa12.92□□□□□ -0.34
SCN1A-207ENST00000507401 DENND4BO75064 1496 aaPredicted RBP12.91□□□□□ -0.34
SCN1A-207ENST00000507401 TROQ12816 1431 aaPredicted RBP12.91□□□□□ -0.34
SCN1A-207ENST00000507401 FXR2P51116 673 aaKnown RBP eCLIP12.91□□□□□ -0.34
SCN1A-207ENST00000507401 EFCAB2Q5VUJ9 269 aa12.91□□□□□ -0.34
SCN1A-207ENST00000507401 TTC37Q6PGP7 1564 aa12.9□□□□□ -0.34
SCN1A-207ENST00000507401 CLIP1P30622 1438 aa12.9□□□□□ -0.34
SCN1A-207ENST00000507401 CCDC18Q5T9S5 1454 aa12.89□□□□□ -0.35
SCN1A-207ENST00000507401 SPDYE1Q8NFV5 336 aaPredicted RBP12.87□□□□□ -0.35
SCN1A-207ENST00000507401 FRMPD1Q5SYB0 1578 aa12.86□□□□□ -0.35
SCN1A-207ENST00000507401 MAGI2Q86UL8 1455 aa12.86□□□□□ -0.35
SCN1A-207ENST00000507401 FYCO1Q9BQS8 1478 aa12.86□□□□□ -0.35
SCN1A-207ENST00000507401 RICTORQ6R327 1708 aa12.86□□□□□ -0.35
SCN1A-207ENST00000507401 LRRIQ1Q96JM4 1722 aa12.86□□□□□ -0.35
SCN1A-207ENST00000507401 SCAPERQ9BY12 1400 aa12.86□□□□□ -0.35
SCN1A-207ENST00000507401 MYO5CQ9NQX4 1742 aa12.85□□□□□ -0.35
SCN1A-207ENST00000507401 KIF14Q15058 1648 aa12.85□□□□□ -0.35
SCN1A-207ENST00000507401 PCF11O94913 1555 aaKnown RBP12.84□□□□□ -0.35
SCN1A-207ENST00000507401 ZMYM4Q5VZL5 1548 aa12.83□□□□□ -0.35
SCN1A-207ENST00000507401 SPDYE4A6NLX3 237 aa12.82□□□□□ -0.36
SCN1A-207ENST00000507401 ARID4BQ4LE39 1312 aaPredicted RBP12.82□□□□□ -0.36
SCN1A-207ENST00000507401 POGZQ7Z3K3 1410 aa12.81□□□□□ -0.36
SCN1A-207ENST00000507401 ADAMTSL3P82987 1691 aa12.8□□□□□ -0.36
SCN1A-207ENST00000507401 ARHGAP5Q13017 1502 aa12.8□□□□□ -0.36
SCN1A-207ENST00000507401 ARHGEF40Q8TER5 1519 aa12.8□□□□□ -0.36
SCN1A-207ENST00000507401 CLEC11AQ9Y240 323 aa12.8□□□□□ -0.36
SCN1A-207ENST00000507401 ZFYVE16Q7Z3T8 1539 aa12.78□□□□□ -0.36
SCN1A-207ENST00000507401 AFAP1Q8N556 730 aa12.78□□□□□ -0.36
SCN1A-207ENST00000507401 BCORL1Q5H9F3 1711 aa12.78□□□□□ -0.36
SCN1A-207ENST00000507401 CDC42BPBQ9Y5S2 1711 aa12.78□□□□□ -0.36
SCN1A-207ENST00000507401 CEP162Q5TB80 1403 aa12.78□□□□□ -0.36
SCN1A-207ENST00000507401 ZNF518AQ6AHZ1 1483 aa12.78□□□□□ -0.36
SCN1A-207ENST00000507401 YEATS2Q9ULM3 1422 aa12.77□□□□□ -0.37
SCN1A-207ENST00000507401 ATP10AO60312 1499 aa12.77□□□□□ -0.37
SCN1A-207ENST00000507401 PTPRMP28827 1452 aa12.77□□□□□ -0.37
SCN1A-207ENST00000507401 PREX2Q70Z35 1606 aa12.75□□□□□ -0.37
SCN1A-207ENST00000507401 KDM5CP41229 1560 aa12.74□□□□□ -0.37
SCN1A-207ENST00000507401 GPATCH8Q9UKJ3 1502 aaKnown RBP12.74□□□□□ -0.37
SCN1A-207ENST00000507401 MLH3Q9UHC1 1453 aa12.74□□□□□ -0.37
SCN1A-207ENST00000507401 LOC105371045A0A1W2PR82 267 aa12.74□□□□□ -0.37
SCN1A-207ENST00000507401 CDC42BPAQ5VT25 1732 aa12.74□□□□□ -0.37
SCN1A-207ENST00000507401 MTUS2Q5JR59 1369 aa12.73□□□□□ -0.37
SCN1A-207ENST00000507401 C9orf84Q5VXU9 1444 aa12.72□□□□□ -0.37
SCN1A-207ENST00000507401 CFDP1Q9UEE9 299 aaPredicted RBP12.72□□□□□ -0.37
SCN1A-207ENST00000507401 ARHGEF12Q9NZN5 1544 aa12.72□□□□□ -0.37
SCN1A-207ENST00000507401 CCNB3Q8WWL7 1395 aa12.71□□□□□ -0.37
SCN1A-207ENST00000507401 MADDQ8WXG6 1647 aa12.71□□□□□ -0.37
SCN1A-207ENST00000507401 MYT1LQ9UL68 1186 aa12.71□□□□□ -0.37
SCN1A-207ENST00000507401 HECW2Q9P2P5 1572 aa12.71□□□□□ -0.37
SCN1A-207ENST00000507401 ABCC1P33527 1531 aa12.71□□□□□ -0.38
SCN1A-207ENST00000507401 KIAA1107Q9UPP5 1409 aa12.71□□□□□ -0.38
SCN1A-207ENST00000507401 TRAPPC8Q9Y2L5 1435 aa12.71□□□□□ -0.38
SCN1A-207ENST00000507401 ZNF777Q9ULD5 760 aaPredicted RBP12.7□□□□□ -0.38
SCN1A-207ENST00000507401 PLEKHH2Q8IVE3 1493 aa12.69□□□□□ -0.38
SCN1A-207ENST00000507401 REREQ9P2R6 1566 aa12.69□□□□□ -0.38
SCN1A-207ENST00000507401 SIGLEC1Q9BZZ2 1709 aa12.68□□□□□ -0.38
SCN1A-207ENST00000507401 ITSN2Q9NZM3 1697 aa12.68□□□□□ -0.38
SCN1A-207ENST00000507401 HNRNPMP52272 730 aaKnown RBP eCLIP12.68□□□□□ -0.38
SCN1A-207ENST00000507401 MLECQ14165 292 aa12.68□□□□□ -0.38
SCN1A-207ENST00000507401 PROM2Q8N271 834 aa12.68□□□□□ -0.38
SCN1A-207ENST00000507401 PRKAR2AP13861 404 aaKnown RBP12.67□□□□□ -0.38
SCN1A-207ENST00000507401 EHBP1L1Q8N3D4 1523 aa12.67□□□□□ -0.38
SCN1A-207ENST00000507401 SAMD9LQ8IVG5 1584 aa12.66□□□□□ -0.38
SCN1A-207ENST00000507401 DIP2CQ9Y2E4 1556 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms