RNA–Protein interactions for RNA: ENST00000470240.5

SMC4-212, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 3

Gene SMC4, Length 724 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-212ENST00000470240 ZNF467Q7Z7K2 595 aaPredicted RBP11.81□□□□□ -0.52
SMC4-212ENST00000470240 TRPC6Q9Y210 931 aa11.81□□□□□ -0.52
SMC4-212ENST00000470240 PDS5BQ9NTI5 1447 aa11.8□□□□□ -0.52
SMC4-212ENST00000470240 RRBP1Q9P2E9 1410 aaKnown RBP11.8□□□□□ -0.52
SMC4-212ENST00000470240 ASTLQ6HA08 431 aaPredicted RBP11.8□□□□□ -0.52
SMC4-212ENST00000470240 PCDHB8Q9UN66 801 aa11.8□□□□□ -0.52
SMC4-212ENST00000470240 CTTNBP2Q8WZ74 1663 aa11.79□□□□□ -0.52
SMC4-212ENST00000470240 POLA1P09884 1462 aaPredicted RBP11.79□□□□□ -0.52
SMC4-212ENST00000470240 ATMINO43313 823 aaPredicted RBP11.79□□□□□ -0.52
SMC4-212ENST00000470240 BMP2KQ9NSY1 1161 aaPredicted RBP11.79□□□□□ -0.52
SMC4-212ENST00000470240 TIAM1Q13009 1591 aa11.79□□□□□ -0.52
SMC4-212ENST00000470240 DIEXFQ68CQ4 756 aaKnown RBP11.78□□□□□ -0.52
SMC4-212ENST00000470240 ZNF316A6NFI3 1004 aaPredicted RBP11.77□□□□□ -0.53
SMC4-212ENST00000470240 WDR97A6NE52 1622 aa11.76□□□□□ -0.53
SMC4-212ENST00000470240 CFAP43Q8NDM7 1665 aa11.76□□□□□ -0.53
SMC4-212ENST00000470240 ATN1P54259 1190 aaPredicted RBP11.76□□□□□ -0.53
SMC4-212ENST00000470240 CCNB3Q8WWL7 1395 aa11.76□□□□□ -0.53
SMC4-212ENST00000470240 TTLL13PA6NNM8 815 aa11.75□□□□□ -0.53
SMC4-212ENST00000470240 TMEM106CQ9BVX2 250 aa11.75□□□□□ -0.53
SMC4-212ENST00000470240 NESP48681 1621 aa11.75□□□□□ -0.53
SMC4-212ENST00000470240 CENPBP07199 599 aaPredicted RBP11.74□□□□□ -0.53
SMC4-212ENST00000470240 RAD54L2Q9Y4B4 1467 aa11.74□□□□□ -0.53
SMC4-212ENST00000470240 KANK4Q5T7N3 995 aaPredicted RBP11.73□□□□□ -0.53
SMC4-212ENST00000470240 FYCO1Q9BQS8 1478 aa11.73□□□□□ -0.53
SMC4-212ENST00000470240 AQRO60306 1485 aaKnown RBP eCLIP11.72□□□□□ -0.532e-51■■■■■ 196.9
SMC4-212ENST00000470240 PELP1Q8IZL8 1130 aaKnown RBP11.72□□□□□ -0.53
SMC4-212ENST00000470240 SLC39A7Q92504 469 aa11.72□□□□□ -0.53
SMC4-212ENST00000470240 PCF11O94913 1555 aaKnown RBP11.71□□□□□ -0.53
SMC4-212ENST00000470240 LRRC9Q6ZRR7 1453 aa11.71□□□□□ -0.53
SMC4-212ENST00000470240 ABCA5Q8WWZ7 1642 aa11.71□□□□□ -0.54
SMC4-212ENST00000470240 URB2Q14146 1524 aaKnown RBP11.7□□□□□ -0.54
SMC4-212ENST00000470240 FMN1Q68DA7 1419 aa11.7□□□□□ -0.54
SMC4-212ENST00000470240 KIF21AQ7Z4S6 1674 aa11.69□□□□□ -0.54
SMC4-212ENST00000470240 ECM2O94769 699 aaPredicted RBP11.69□□□□□ -0.54
SMC4-212ENST00000470240 TRIM35Q9UPQ4 493 aa11.69□□□□□ -0.54
SMC4-212ENST00000470240 GAPVD1Q14C86 1478 aa11.69□□□□□ -0.54
SMC4-212ENST00000470240 C7P10643 843 aa11.68□□□□□ -0.54
SMC4-212ENST00000470240 METRNQ9UJH8 293 aa11.68□□□□□ -0.54
SMC4-212ENST00000470240 CASKIN1Q8WXD9 1431 aa11.68□□□□□ -0.54
SMC4-212ENST00000470240 DHX57Q6P158 1386 aaKnown RBP11.67□□□□□ -0.54
SMC4-212ENST00000470240 PSEN1P49768 467 aa11.67□□□□□ -0.54
SMC4-212ENST00000470240 PDAP1Q13442 181 aaKnown RBP11.67□□□□□ -0.54
SMC4-212ENST00000470240 GOLGA2Q08379 1002 aa11.66□□□□□ -0.54
SMC4-212ENST00000470240 FHOD3Q2V2M9 1422 aa11.65□□□□□ -0.54
SMC4-212ENST00000470240 THOC2Q8NI27 1593 aaKnown RBP11.65□□□□□ -0.54
SMC4-212ENST00000470240 RIOK3O14730 519 aaKnown RBP11.64□□□□□ -0.55
SMC4-212ENST00000470240 LHX8Q68G74 356 aa11.64□□□□□ -0.55
SMC4-212ENST00000470240 ATP1B4Q9UN42 357 aaPredicted RBP11.64□□□□□ -0.55
SMC4-212ENST00000470240 PKD2Q13563 968 aa11.63□□□□□ -0.55
SMC4-212ENST00000470240 PBRM1Q86U86 1689 aa11.62□□□□□ -0.55
SMC4-212ENST00000470240 SEC24BO95487 1268 aa11.62□□□□□ -0.55
SMC4-212ENST00000470240 SAMD9Q5K651 1589 aa11.62□□□□□ -0.55
SMC4-212ENST00000470240 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.61□□□□□ -0.553e-9■■■■■ 74.3
SMC4-212ENST00000470240 MRC2Q9UBG0 1479 aa11.61□□□□□ -0.55
SMC4-212ENST00000470240 SETD5Q9C0A6 1442 aa11.6□□□□□ -0.55
SMC4-212ENST00000470240 TDRD9Q8NDG6 1382 aaKnown RBP11.6□□□□□ -0.55
SMC4-212ENST00000470240 ITGAEP38570 1179 aa11.6□□□□□ -0.55
SMC4-212ENST00000470240 IER5LQ5T953 404 aa11.6□□□□□ -0.55
SMC4-212ENST00000470240 P3H3Q8IVL6 736 aa11.6□□□□□ -0.55
SMC4-212ENST00000470240 RNF25Q96BH1 459 aaPredicted RBP11.6□□□□□ -0.55
SMC4-212ENST00000470240 TAOK2Q9UL54 1235 aa11.6□□□□□ -0.55
SMC4-212ENST00000470240 TARBP1Q13395 1621 aaKnown RBP11.6□□□□□ -0.55
SMC4-212ENST00000470240 ACIN1Q9UKV3 1341 aaKnown RBP11.6□□□□□ -0.55
SMC4-212ENST00000470240 FAM50AQ14320 339 aaKnown RBP11.59□□□□□ -0.55
SMC4-212ENST00000470240 MTUS2Q5JR59 1369 aa11.58□□□□□ -0.56
SMC4-212ENST00000470240 RAB3GAP2Q9H2M9 1393 aa11.58□□□□□ -0.56
SMC4-212ENST00000470240 VGFO15240 615 aaPredicted RBP11.58□□□□□ -0.56
SMC4-212ENST00000470240 CCDC18Q5T9S5 1454 aa11.57□□□□□ -0.56
SMC4-212ENST00000470240 PHLDB1Q86UU1 1377 aa11.57□□□□□ -0.56
SMC4-212ENST00000470240 EHBP1L1Q8N3D4 1523 aa11.57□□□□□ -0.56
SMC4-212ENST00000470240 MKRN3Q13064 507 aaKnown RBP11.57□□□□□ -0.56
SMC4-212ENST00000470240 SNAPC4Q5SXM2 1469 aa11.57□□□□□ -0.56
SMC4-212ENST00000470240 HECW1Q76N89 1606 aa11.57□□□□□ -0.56
SMC4-212ENST00000470240 SUPT6HQ7KZ85 1726 aaKnown RBP11.56□□□□□ -0.56
SMC4-212ENST00000470240 ADAMTS12P58397 1594 aa11.55□□□□□ -0.56
SMC4-212ENST00000470240 IQGAP2Q13576 1575 aa11.55□□□□□ -0.56
SMC4-212ENST00000470240 CABP2Q9NPB3 220 aa11.55□□□□□ -0.56
SMC4-212ENST00000470240 PLCG2P16885 1265 aa11.54□□□□□ -0.56
SMC4-212ENST00000470240 GRIN2BQ13224 1484 aa11.54□□□□□ -0.56
SMC4-212ENST00000470240 IFT140Q96RY7 1462 aa11.54□□□□□ -0.56
SMC4-212ENST00000470240 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.53□□□□□ -0.56
SMC4-212ENST00000470240 RGL2O15211 777 aa11.53□□□□□ -0.56
SMC4-212ENST00000470240 ZFP91Q96JP5 570 aaPredicted RBP11.53□□□□□ -0.56
SMC4-212ENST00000470240 FGD6Q6ZV73 1430 aa11.52□□□□□ -0.56
SMC4-212ENST00000470240 TIMELESSQ9UNS1 1208 aa11.51□□□□□ -0.57
SMC4-212ENST00000470240 COLQQ9Y215 455 aaPredicted RBP11.51□□□□□ -0.57
SMC4-212ENST00000470240 WDR62O43379 1518 aa11.5□□□□□ -0.57
SMC4-212ENST00000470240 MYOM3Q5VTT5 1437 aa11.5□□□□□ -0.57
SMC4-212ENST00000470240 POTEFA5A3E0 1075 aa11.49□□□□□ -0.57
SMC4-212ENST00000470240 POTEB2H3BUK9 544 aa11.49□□□□□ -0.57
SMC4-212ENST00000470240 OCEL1Q9H607 264 aa11.49□□□□□ -0.57
SMC4-212ENST00000470240 IRX5P78411 483 aaPredicted RBP11.48□□□□□ -0.57
SMC4-212ENST00000470240 MAPKBP1O60336 1514 aa11.48□□□□□ -0.57
SMC4-212ENST00000470240 NCOA2Q15596 1464 aa11.47□□□□□ -0.57
SMC4-212ENST00000470240 NEUROD1Q13562 356 aa11.47□□□□□ -0.57
SMC4-212ENST00000470240 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.47□□□□□ -0.571e-7■■■■■ 37.7
SMC4-212ENST00000470240 STK25O00506 426 aa11.46□□□□□ -0.57
SMC4-212ENST00000470240 LRRIQ1Q96JM4 1722 aa11.46□□□□□ -0.58
SMC4-212ENST00000470240 UGGT2Q9NYU1 1516 aa11.45□□□□□ -0.58
SMC4-212ENST00000470240 ERCC6Q03468 1493 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms