RNA–Protein interactions for RNA: ENST00000470240.5

SMC4-212, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 3

Gene SMC4, Length 724 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-212ENST00000470240 SDAD1Q9NVU7 687 aaKnown RBP eCLIP8.24□□□□□ -1.094e-98■■■■■ 943.1
SMC4-212ENST00000470240 UTP3Q9NQZ2 479 aaKnown RBP eCLIP8.5□□□□□ -1.052e-129■■■■■ 884.5
SMC4-212ENST00000470240 PABPC4Q13310 644 aaKnown RBP eCLIP8.76□□□□□ -1.018e-9■■■■■ 603.5
SMC4-212ENST00000470240 RPS11P62280 158 aaKnown RBP eCLIP7.22□□□□□ -1.258e-17■■■■■ 578.9
SMC4-212ENST00000470240 DDX52Q9Y2R4 599 aaKnown RBP eCLIP9.08□□□□□ -0.962e-144■■■■■ 553.7
SMC4-212ENST00000470240 DDX3XO00571 662 aaKnown RBP eCLIP8.62□□□□□ -1.034e-78■■■■■ 527.9
SMC4-212ENST00000470240 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.78□□□□□ -0.841e-6■■■■■ 406.9
SMC4-212ENST00000470240 YWHAGP61981 247 aaKnown RBP eCLIP8.31□□□□□ -1.081e-117■■■■■ 400.8
SMC4-212ENST00000470240 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP8.15□□□□□ -1.15e-13■■■■■ 348.1
SMC4-212ENST00000470240 XRN2Q9H0D6 950 aaKnown RBP eCLIP8.08□□□□□ -1.121e-147■■■■■ 345.5
SMC4-212ENST00000470240 RPS3P23396 243 aaKnown RBP eCLIP7.9□□□□□ -1.147e-64■■■■■ 337.8
SMC4-212ENST00000470240 SF3B1O75533 1304 aaKnown RBP eCLIP8.26□□□□□ -1.097e-33■■■■■ 320.9
SMC4-212ENST00000470240 AGGF1Q8N302 714 aaeCLIP8.29□□□□□ -1.082e-85■■■■■ 286.7
SMC4-212ENST00000470240 SBDSQ9Y3A5 250 aaKnown RBP eCLIP8.59□□□□□ -1.035e-47■■■■■ 274.1
SMC4-212ENST00000470240 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP8.71□□□□□ -1.021e-8■■■■■ 268.2
SMC4-212ENST00000470240 AARSP49588 968 aaKnown RBP eCLIP8.71□□□□□ -1.023e-49■■■■■ 252.4
SMC4-212ENST00000470240 LSM11P83369 360 aaKnown RBP eCLIP10.42□□□□□ -0.747e-97■■■■■ 245.7
SMC4-212ENST00000470240 QKIQ96PU8 341 aaKnown RBP eCLIP8.26□□□□□ -1.097e-7■■■■■ 232.7
SMC4-212ENST00000470240 RBM15Q96T37 977 aaKnown RBP eCLIP8.41□□□□□ -1.065e-67■■■■■ 212.6
SMC4-212ENST00000470240 SF3A3Q12874 501 aaKnown RBP eCLIP8.27□□□□□ -1.094e-10■■■■■ 210.9
SMC4-212ENST00000470240 ZNF800Q2TB10 664 aaPredicted RBP eCLIP8.56□□□□□ -1.042e-41■■■■■ 207.1
SMC4-212ENST00000470240 DDX21Q9NR30 783 aaKnown RBP eCLIP9.65□□□□□ -0.861e-26■■■■■ 198.7
SMC4-212ENST00000470240 AQRO60306 1485 aaKnown RBP eCLIP11.72□□□□□ -0.532e-51■■■■■ 196.9
SMC4-212ENST00000470240 GTF2F1P35269 517 aaKnown RBP eCLIP9.16□□□□□ -0.948e-49■■■■■ 172.1
SMC4-212ENST00000470240 BUD13Q9BRD0 619 aaKnown RBP eCLIP8.65□□□□□ -1.022e-9■■■■■ 161.6
SMC4-212ENST00000470240 NCBP2P52298 156 aaKnown RBP eCLIP7.57□□□□□ -1.26e-34■■■■■ 154.9
SMC4-212ENST00000470240 SUGP2Q8IX01 1082 aaKnown RBP eCLIP10.15□□□□□ -0.786e-65■■■■■ 143.5
SMC4-212ENST00000470240 NONOQ15233 471 aaKnown RBP eCLIP9□□□□□ -0.972e-56■■■■■ 142.8
SMC4-212ENST00000470240 AKAP1Q92667 903 aaKnown RBP eCLIP7.31□□□□□ -1.244e-24■■■■■ 140.6
SMC4-212ENST00000470240 G3BP1Q13283 466 aaKnown RBP eCLIP9.65□□□□□ -0.861e-39■■■■■ 140
SMC4-212ENST00000470240 NOL12Q9UGY1 213 aaKnown RBP eCLIP8.93□□□□□ -0.987e-44■■■■■ 137.4
SMC4-212ENST00000470240 XPO5Q9HAV4 1204 aaKnown RBP eCLIP8.79□□□□□ -14e-34■■■■■ 131.8
SMC4-212ENST00000470240 HLTFQ14527 1009 aaKnown RBP eCLIP8.65□□□□□ -1.025e-35■■■■■ 127.1
SMC4-212ENST00000470240 CPEB4Q17RY0 729 aaKnown RBP eCLIP7.35□□□□□ -1.234e-9■■■■■ 118.1
SMC4-212ENST00000470240 AATFQ9NY61 560 aaKnown RBP eCLIP9.1□□□□□ -0.954e-8■■■■■ 116
SMC4-212ENST00000470240 ZC3H11AO75152 810 aaKnown RBP eCLIP8.6□□□□□ -1.034e-12■■■■■ 110
SMC4-212ENST00000470240 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP5.94□□□□□ -1.461e-8■■■■■ 101.8
SMC4-212ENST00000470240 WDR43Q15061 677 aaKnown RBP eCLIP10.6□□□□□ -0.715e-20■■■■■ 85.2
SMC4-212ENST00000470240 NIP7Q9Y221 180 aaKnown RBP eCLIP9.25□□□□□ -0.931e-7■■■■■ 83.2
SMC4-212ENST00000470240 PPIGQ13427 754 aaKnown RBP eCLIP7.72□□□□□ -1.172e-27■■■■■ 81.9
SMC4-212ENST00000470240 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP8.28□□□□□ -1.083e-18■■■■■ 78.4
SMC4-212ENST00000470240 FXR2P51116 673 aaKnown RBP eCLIP12.87□□□□□ -0.358e-21■■■■■ 76.4
SMC4-212ENST00000470240 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.61□□□□□ -0.553e-9■■■■■ 74.3
SMC4-212ENST00000470240 LIN28BQ6ZN17 250 aaKnown RBP eCLIP7.81□□□□□ -1.164e-23■■■■■ 72.8
SMC4-212ENST00000470240 HNRNPUQ00839 825 aaKnown RBP eCLIP10.94□□□□□ -0.662e-22■■■■■ 68.1
SMC4-212ENST00000470240 SMNDC1O75940 238 aaKnown RBP eCLIP8.04□□□□□ -1.122e-16■■■■■ 67.6
SMC4-212ENST00000470240 RBM22Q9NW64 420 aaKnown RBP eCLIP8.08□□□□□ -1.125e-24■■■■■ 66.5
SMC4-212ENST00000470240 DDX59Q5T1V6 619 aaKnown RBP eCLIP7.65□□□□□ -1.181e-13■■■■■ 65.9
SMC4-212ENST00000470240 TROVE2P10155 538 aaKnown RBP eCLIP8.34□□□□□ -1.071e-12■■■■■ 61.2
SMC4-212ENST00000470240 EIF3GO75821 320 aaKnown RBP eCLIP6.6□□□□□ -1.358e-13■■■■■ 59.2
SMC4-212ENST00000470240 TBRG4Q969Z0 631 aaKnown RBP eCLIP8□□□□□ -1.132e-13■■■■■ 56.3
SMC4-212ENST00000470240 EIF3DO15371 548 aaKnown RBP eCLIP8.76□□□□□ -1.012e-16■■■■■ 56.2
SMC4-212ENST00000470240 SSBP05455 408 aaKnown RBP eCLIP8.85□□□□□ -0.999e-17■■■■■ 55.5
SMC4-212ENST00000470240 PUM2Q8TB72 1066 aaKnown RBP eCLIP7.6□□□□□ -1.192e-6■■■■■ 54.3
SMC4-212ENST00000470240 UTP18Q9Y5J1 556 aaKnown RBP eCLIP8.81□□□□□ -11e-8■■■■■ 54.3
SMC4-212ENST00000470240 RBFOX2O43251 390 aaKnown RBP eCLIP6.67□□□□□ -1.343e-8■■■■■ 54.1
SMC4-212ENST00000470240 U2AF2P26368 475 aaKnown RBP eCLIP9.18□□□□□ -0.943e-8■■■■■ 49.6
SMC4-212ENST00000470240 GRSF1Q12849 480 aaKnown RBP eCLIP7.71□□□□□ -1.182e-14■■■■■ 48.8
SMC4-212ENST00000470240 HNRNPLP14866 589 aaKnown RBP eCLIP7.97□□□□□ -1.132e-15■■■■■ 47.4
SMC4-212ENST00000470240 NIPBLQ6KC79 2804 aaeCLIP5.1□□□□□ -1.598e-8■■■■■ 47
SMC4-212ENST00000470240 HNRNPKP61978 463 aaKnown RBP eCLIP7.32□□□□□ -1.245e-13■■■■■ 46
SMC4-212ENST00000470240 KHSRPQ92945 711 aaKnown RBP eCLIP10.72□□□□□ -0.693e-15■■■■■ 43.1
SMC4-212ENST00000470240 ILF3Q12906 894 aaKnown RBP eCLIP7.48□□□□□ -1.218e-14■■■■■ 40.3
SMC4-212ENST00000470240 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP7.33□□□□□ -1.247e-12■■■■■ 38.5
SMC4-212ENST00000470240 PCBP1Q15365 356 aaKnown RBP eCLIP8.36□□□□□ -1.077e-12■■■■■ 38.2
SMC4-212ENST00000470240 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.47□□□□□ -0.571e-7■■■■■ 37.7
SMC4-212ENST00000470240 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.14■□□□□ 0.012e-7■■■■■ 35.7
SMC4-212ENST00000470240 SND1Q7KZF4 910 aaKnown RBP eCLIP8.69□□□□□ -1.026e-9■■■■■ 32.8
SMC4-212ENST00000470240 NOLC1Q14978 699 aaKnown RBP eCLIP9.26□□□□□ -0.934e-16■■■■■ 30.2
SMC4-212ENST00000470240 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP8.3□□□□□ -1.082e-7■■■■□ 26.2
SMC4-212ENST00000470240 UPF1Q92900 1129 aaKnown RBP eCLIP10.69□□□□□ -0.71e-11■■■■□ 26.2
SMC4-212ENST00000470240 TAF15Q92804 592 aaKnown RBP eCLIP6.68□□□□□ -1.347e-26■■■■□ 25.9
SMC4-212ENST00000470240 LARP4Q71RC2 724 aaKnown RBP eCLIP7.92□□□□□ -1.144e-12■■■■□ 24.2
SMC4-212ENST00000470240 WDR3Q9UNX4 943 aaKnown RBP eCLIP8.36□□□□□ -1.075e-7■■■■□ 23.7
SMC4-212ENST00000470240 SF3B4Q15427 424 aaKnown RBP eCLIP7.26□□□□□ -1.252e-8■■■■□ 23.1
SMC4-212ENST00000470240 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP10.94□□□□□ -0.668e-10■■■■□ 19.5
SMC4-212ENST00000470240 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP9.03□□□□□ -0.963e-11■■■□□ 18.8
SMC4-212ENST00000470240 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP8.76□□□□□ -1.017e-7■■□□□ 12.7
SMC4-212ENST00000470240 EFTUD2Q15029 972 aaKnown RBP eCLIP8.25□□□□□ -1.097e-8■■□□□ 11.8
SMC4-212ENST00000470240 FMR1Q06787 632 aaKnown RBP eCLIP9□□□□□ -0.975e-7■□□□□ 11.2
SMC4-212ENST00000470240 GPKOWQ92917 476 aaPredicted RBP eCLIP8.98□□□□□ -0.974e-13■□□□□ 10.3
SMC4-212ENST00000470240 ZNF622Q969S3 477 aaKnown RBP eCLIP8.85□□□□□ -0.995e-7■□□□□ 10.1
Retrieved 82 of 82 RNA–protein pairs in 18.6 ms