RNA–Protein interactions for RNA: ENST00000444272.1

SYNCRIP-203, Transcript of synaptotagmin binding cytoplasmic RNA interacting protein, humanhuman

TSL 3

Gene SYNCRIP, Length 610 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNCRIP-203ENST00000444272 PHF23Q9BUL5 403 aaPredicted RBP25.43■■□□□ 1.66
SYNCRIP-203ENST00000444272 HSPA1LP34931 641 aa25.39■■□□□ 1.66
SYNCRIP-203ENST00000444272 MAGI2Q86UL8 1455 aa25.38■■□□□ 1.65
SYNCRIP-203ENST00000444272 HECW1Q76N89 1606 aa25.37■■□□□ 1.65
SYNCRIP-203ENST00000444272 CFAP74Q9C0B2 1584 aa25.36■■□□□ 1.65
SYNCRIP-203ENST00000444272 NCOA1Q15788 1441 aa25.35■■□□□ 1.65
SYNCRIP-203ENST00000444272 ZNF335Q9H4Z2 1342 aaPredicted RBP25.34■■□□□ 1.65
SYNCRIP-203ENST00000444272 SCAF1Q9H7N4 1312 aaKnown RBP25.32■■□□□ 1.64
SYNCRIP-203ENST00000444272 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.28■■□□□ 1.64
SYNCRIP-203ENST00000444272 HNRNPUL2Q1KMD3 747 aaKnown RBP25.28■■□□□ 1.64
SYNCRIP-203ENST00000444272 C3P01024 1663 aa25.28■■□□□ 1.64
SYNCRIP-203ENST00000444272 C9orf84Q5VXU9 1444 aa25.28■■□□□ 1.64
SYNCRIP-203ENST00000444272 ATP10AO60312 1499 aa25.28■■□□□ 1.64
SYNCRIP-203ENST00000444272 FAM9AQ8IZU1 332 aaPredicted RBP25.25■■□□□ 1.63
SYNCRIP-203ENST00000444272 PIP4K2BP78356 416 aa25.24■■□□□ 1.63
SYNCRIP-203ENST00000444272 CAMSAP1Q5T5Y3 1602 aa25.22■■□□□ 1.63
SYNCRIP-203ENST00000444272 RAPGEF6Q8TEU7 1601 aa25.19■■□□□ 1.62
SYNCRIP-203ENST00000444272 P3H3Q8IVL6 736 aa25.18■■□□□ 1.62
SYNCRIP-203ENST00000444272 TRAPPC8Q9Y2L5 1435 aa25.17■■□□□ 1.62
SYNCRIP-203ENST00000444272 NCKAP5LQ9HCH0 1330 aa25.15■■□□□ 1.62
SYNCRIP-203ENST00000444272 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP25.15■■□□□ 1.623e-10■■■■□ 20.3
SYNCRIP-203ENST00000444272 SCAPERQ9BY12 1400 aa25.14■■□□□ 1.62
SYNCRIP-203ENST00000444272 TOM1O60784 492 aa25.09■■□□□ 1.61
SYNCRIP-203ENST00000444272 NUP153P49790 1475 aaKnown RBP25.07■■□□□ 1.6
SYNCRIP-203ENST00000444272 PLEKHD1A6NEE1 506 aa25.04■■□□□ 1.6
SYNCRIP-203ENST00000444272 ESF1Q9H501 851 aaKnown RBP25.04■■□□□ 1.6
SYNCRIP-203ENST00000444272 RGS17Q9UGC6 210 aaPredicted RBP25.03■■□□□ 1.6
SYNCRIP-203ENST00000444272 SUPT6HQ7KZ85 1726 aaKnown RBP24.98■■□□□ 1.59
SYNCRIP-203ENST00000444272 PKD2Q13563 968 aa24.98■■□□□ 1.59
SYNCRIP-203ENST00000444272 DIP2CQ9Y2E4 1556 aa24.97■■□□□ 1.59
SYNCRIP-203ENST00000444272 SENP3Q9H4L4 574 aaPredicted RBP24.97■■□□□ 1.59
SYNCRIP-203ENST00000444272 PLA2R1Q13018 1463 aa24.96■■□□□ 1.59
SYNCRIP-203ENST00000444272 PPP6R1Q9UPN7 881 aa24.95■■□□□ 1.58
SYNCRIP-203ENST00000444272 TCOF1Q13428 1488 aaKnown RBP24.95■■□□□ 1.58
SYNCRIP-203ENST00000444272 REREQ9P2R6 1566 aa24.94■■□□□ 1.58
SYNCRIP-203ENST00000444272 SAMD9Q5K651 1589 aa24.93■■□□□ 1.58
SYNCRIP-203ENST00000444272 AGLP35573 1532 aa24.93■■□□□ 1.58
SYNCRIP-203ENST00000444272 PLCH2O75038 1416 aa24.93■■□□□ 1.58
SYNCRIP-203ENST00000444272 MYT1LQ9UL68 1186 aa24.92■■□□□ 1.58
SYNCRIP-203ENST00000444272 NPATQ14207 1427 aa24.92■■□□□ 1.58
SYNCRIP-203ENST00000444272 CPS1P31327 1500 aa24.91■■□□□ 1.58
SYNCRIP-203ENST00000444272 ZNF518AQ6AHZ1 1483 aa24.91■■□□□ 1.58
SYNCRIP-203ENST00000444272 ZNF142P52746 1687 aaPredicted RBP24.91■■□□□ 1.58
SYNCRIP-203ENST00000444272 ALKQ9UM73 1620 aa24.9■■□□□ 1.58
SYNCRIP-203ENST00000444272 ABCA6Q8N139 1617 aa24.9■■□□□ 1.58
SYNCRIP-203ENST00000444272 KDM5CP41229 1560 aa24.89■■□□□ 1.58
SYNCRIP-203ENST00000444272 CNTLNQ9NXG0 1405 aa24.89■■□□□ 1.58
SYNCRIP-203ENST00000444272 MYO3AQ8NEV4 1616 aa24.88■■□□□ 1.57
SYNCRIP-203ENST00000444272 PTPRKQ15262 1439 aa24.87■■□□□ 1.57
SYNCRIP-203ENST00000444272 SETD1AO15047 1707 aaKnown RBP24.86■■□□□ 1.57
SYNCRIP-203ENST00000444272 AFAP1Q8N556 730 aa24.85■■□□□ 1.57
SYNCRIP-203ENST00000444272 MROH2AA6NES4 1674 aa24.85■■□□□ 1.57
SYNCRIP-203ENST00000444272 CEP170BQ9Y4F5 1589 aaPredicted RBP24.84■■□□□ 1.57
SYNCRIP-203ENST00000444272 POTEAQ6S8J7 498 aa24.83■■□□□ 1.57
SYNCRIP-203ENST00000444272 SRCAPQ6ZRS2 3230 aa24.83■■□□□ 1.57
SYNCRIP-203ENST00000444272 EFCAB2Q5VUJ9 269 aa24.82■■□□□ 1.56
SYNCRIP-203ENST00000444272 MYO5CQ9NQX4 1742 aa24.82■■□□□ 1.56
SYNCRIP-203ENST00000444272 SHANK2Q9UPX8 1470 aa24.82■■□□□ 1.56
SYNCRIP-203ENST00000444272 PRXQ9BXM0 1461 aa24.8■■□□□ 1.56
SYNCRIP-203ENST00000444272 ZMYM3Q14202 1370 aa24.78■■□□□ 1.56
SYNCRIP-203ENST00000444272 MLH3Q9UHC1 1453 aa24.73■■□□□ 1.55
SYNCRIP-203ENST00000444272 POLR1AO95602 1720 aaPredicted RBP24.72■■□□□ 1.55
SYNCRIP-203ENST00000444272 CDK13Q14004 1512 aaKnown RBP24.71■■□□□ 1.55
SYNCRIP-203ENST00000444272 NEURL4Q96JN8 1562 aa24.69■■□□□ 1.54
SYNCRIP-203ENST00000444272 ARHGAP5Q13017 1502 aa24.68■■□□□ 1.54
SYNCRIP-203ENST00000444272 CLTCQ00610 1675 aaKnown RBP24.68■■□□□ 1.54
SYNCRIP-203ENST00000444272 VWDEQ8N2E2 1590 aa24.67■■□□□ 1.54
SYNCRIP-203ENST00000444272 DNMT1P26358 1616 aaKnown RBP24.64■■□□□ 1.54
SYNCRIP-203ENST00000444272 RANGAP1P46060 587 aaPredicted RBP24.63■■□□□ 1.53
SYNCRIP-203ENST00000444272 RNF17Q9BXT8 1623 aaKnown RBP24.63■■□□□ 1.53
SYNCRIP-203ENST00000444272 KIDINS220Q9ULH0 1771 aa24.62■■□□□ 1.53
SYNCRIP-203ENST00000444272 A2ML1A8K2U0 1454 aa24.6■■□□□ 1.53
SYNCRIP-203ENST00000444272 UPF1Q92900 1129 aaKnown RBP eCLIP24.6■■□□□ 1.533e-16■■■■□ 23.7
SYNCRIP-203ENST00000444272 KIF14Q15058 1648 aa24.6■■□□□ 1.53
SYNCRIP-203ENST00000444272 LRRC7Q96NW7 1537 aa24.54■■□□□ 1.52
SYNCRIP-203ENST00000444272 ITSN2Q9NZM3 1697 aa24.53■■□□□ 1.52
SYNCRIP-203ENST00000444272 STRCP1A6NGW2 1772 aa24.53■■□□□ 1.52
SYNCRIP-203ENST00000444272 ABCC1P33527 1531 aa24.51■■□□□ 1.51
SYNCRIP-203ENST00000444272 CDC42BPBQ9Y5S2 1711 aa24.51■■□□□ 1.51
SYNCRIP-203ENST00000444272 SYNMO15061 1565 aa24.5■■□□□ 1.51
SYNCRIP-203ENST00000444272 ANKLE2Q86XL3 938 aa24.45■■□□□ 1.5
SYNCRIP-203ENST00000444272 NPHP4O75161 1426 aaPredicted RBP24.44■■□□□ 1.5
SYNCRIP-203ENST00000444272 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP24.42■■□□□ 1.52e-12■■■□□ 18.7
SYNCRIP-203ENST00000444272 IQGAP1P46940 1657 aa24.41■■□□□ 1.5
SYNCRIP-203ENST00000444272 MED14O60244 1454 aa24.4■■□□□ 1.5
SYNCRIP-203ENST00000444272 DEPDC5O75140 1603 aa24.39■■□□□ 1.5
SYNCRIP-203ENST00000444272 GGT6Q6P531 493 aa24.39■■□□□ 1.49
SYNCRIP-203ENST00000444272 PREX2Q70Z35 1606 aa24.39■■□□□ 1.49
SYNCRIP-203ENST00000444272 SAMD9LQ8IVG5 1584 aa24.38■■□□□ 1.49
SYNCRIP-203ENST00000444272 ATP1B4Q9UN42 357 aaPredicted RBP24.38■■□□□ 1.49
SYNCRIP-203ENST00000444272 CDK11AQ9UQ88 783 aaPredicted RBP24.37■■□□□ 1.49
SYNCRIP-203ENST00000444272 PLXNC1O60486 1568 aa24.37■■□□□ 1.49
SYNCRIP-203ENST00000444272 TROQ12816 1431 aaPredicted RBP24.36■■□□□ 1.49
SYNCRIP-203ENST00000444272 TRIM52Q96A61 297 aa24.36■■□□□ 1.49
SYNCRIP-203ENST00000444272 TNRQ92752 1358 aa24.34■■□□□ 1.49
SYNCRIP-203ENST00000444272 CLIP1P30622 1438 aa24.33■■□□□ 1.49
SYNCRIP-203ENST00000444272 FAM135BQ49AJ0 1406 aa24.33■■□□□ 1.49
SYNCRIP-203ENST00000444272 XIRP1Q702N8 1843 aaKnown RBP24.31■■□□□ 1.48
SYNCRIP-203ENST00000444272 THEMISQ8N1K5 641 aaPredicted RBP24.3■■□□□ 1.48
SYNCRIP-203ENST00000444272 A2MP01023 1474 aa24.3■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 76 ms