RNA–Protein interactions for RNA: ENST00000439886.5

SMPD4-209, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 2

Gene SMPD4, Length 3,371 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-209ENST00000439886 RCAN3Q9UKA8 241 aa15.45■□□□□ 0.06
SMPD4-209ENST00000439886 CUX1P39880 1505 aa15.45■□□□□ 0.06
SMPD4-209ENST00000439886 RBM10P98175 930 aaKnown RBP15.45■□□□□ 0.06
SMPD4-209ENST00000439886 FMN1Q68DA7 1419 aa15.44■□□□□ 0.06
SMPD4-209ENST00000439886 FGD6Q6ZV73 1430 aa15.44■□□□□ 0.06
SMPD4-209ENST00000439886 AQRO60306 1485 aaKnown RBP eCLIP15.44■□□□□ 0.066e-7■■■■□ 21.1
SMPD4-209ENST00000439886 GSE1Q14687 1217 aa15.44■□□□□ 0.06
SMPD4-209ENST00000439886 RGS3P49796 1198 aa15.43■□□□□ 0.06
SMPD4-209ENST00000439886 FGD1P98174 961 aa15.43■□□□□ 0.06
SMPD4-209ENST00000439886 RRP1P56182 461 aaKnown RBP15.42■□□□□ 0.06
SMPD4-209ENST00000439886 PTPRKQ15262 1439 aa15.42■□□□□ 0.06
SMPD4-209ENST00000439886 NCAPD3P42695 1498 aa15.42■□□□□ 0.06
SMPD4-209ENST00000439886 PEG3Q9GZU2 1588 aa15.42■□□□□ 0.06
SMPD4-209ENST00000439886 FRAT1Q92837 279 aaPredicted RBP15.41■□□□□ 0.06
SMPD4-209ENST00000439886 RSPH6AQ9H0K4 717 aa15.41■□□□□ 0.06
SMPD4-209ENST00000439886 ZNF777Q9ULD5 760 aaPredicted RBP15.41■□□□□ 0.06
SMPD4-209ENST00000439886 NFKBIBQ15653 356 aa15.41■□□□□ 0.06
SMPD4-209ENST00000439886 DDRGK1Q96HY6 314 aa15.4■□□□□ 0.06
SMPD4-209ENST00000439886 USP35Q9P2H5 1018 aa15.39■□□□□ 0.05
SMPD4-209ENST00000439886 BACH2Q9BYV9 841 aa15.38■□□□□ 0.05
SMPD4-209ENST00000439886 SMG6Q86US8 1419 aaKnown RBP15.38■□□□□ 0.05
SMPD4-209ENST00000439886 CDCA7LQ96GN5 454 aa15.38■□□□□ 0.05
SMPD4-209ENST00000439886 NAIPQ13075 1403 aa15.37■□□□□ 0.05
SMPD4-209ENST00000439886 CARD11Q9BXL7 1154 aa15.35■□□□□ 0.05
SMPD4-209ENST00000439886 PCF11O94913 1555 aaKnown RBP15.35■□□□□ 0.05
SMPD4-209ENST00000439886 HFM1A2PYH4 1435 aa15.35■□□□□ 0.05
SMPD4-209ENST00000439886 AAMPQ13685 434 aa15.35■□□□□ 0.05
SMPD4-209ENST00000439886 CRBNQ96SW2 442 aa15.35■□□□□ 0.05
SMPD4-209ENST00000439886 CC2D1BQ5T0F9 858 aaKnown RBP15.34■□□□□ 0.05
SMPD4-209ENST00000439886 PNISRQ8TF01 805 aaKnown RBP15.34■□□□□ 0.05
SMPD4-209ENST00000439886 FRAT2O75474 233 aaPredicted RBP15.33■□□□□ 0.04
SMPD4-209ENST00000439886 HMGXB3Q12766 1538 aa15.32■□□□□ 0.04
SMPD4-209ENST00000439886 KLHL34Q8N239 644 aa15.3■□□□□ 0.04
SMPD4-209ENST00000439886 NCOA1Q15788 1441 aa15.3■□□□□ 0.04
SMPD4-209ENST00000439886 BIVM-ERCC5R4GMW8 1640 aa15.29■□□□□ 0.04
SMPD4-209ENST00000439886 SLKQ9H2G2 1235 aaPredicted RBP15.29■□□□□ 0.04
SMPD4-209ENST00000439886 CFTRP13569 1480 aa15.27■□□□□ 0.04
SMPD4-209ENST00000439886 USP47Q96K76 1375 aa15.27■□□□□ 0.03
SMPD4-209ENST00000439886 HSP90AA2PQ14568 343 aaPredicted RBP15.27■□□□□ 0.03
SMPD4-209ENST00000439886 NCOA2Q15596 1464 aa15.26■□□□□ 0.03
SMPD4-209ENST00000439886 ST20-MTHFSA0A0A6YYL1 179 aa15.26■□□□□ 0.03
SMPD4-209ENST00000439886 SPRYD3Q8NCJ5 442 aa15.26■□□□□ 0.03
SMPD4-209ENST00000439886 PTPN23Q9H3S7 1636 aa15.26■□□□□ 0.03
SMPD4-209ENST00000439886 MAP3K1Q13233 1512 aa15.26■□□□□ 0.03
SMPD4-209ENST00000439886 MS4A1P11836 297 aa15.25■□□□□ 0.03
SMPD4-209ENST00000439886 RGL3Q3MIN7 710 aa15.25■□□□□ 0.03
SMPD4-209ENST00000439886 MYOM3Q5VTT5 1437 aa15.25■□□□□ 0.03
SMPD4-209ENST00000439886 ARID4BQ4LE39 1312 aaPredicted RBP15.25■□□□□ 0.03
SMPD4-209ENST00000439886 CASKIN1Q8WXD9 1431 aa15.25■□□□□ 0.03
SMPD4-209ENST00000439886 NAP1L5Q96NT1 182 aaPredicted RBP15.25■□□□□ 0.03
SMPD4-209ENST00000439886 ZNF644Q9H582 1327 aaPredicted RBP15.25■□□□□ 0.03
SMPD4-209ENST00000439886 PKD2Q13563 968 aa15.24■□□□□ 0.03
SMPD4-209ENST00000439886 FGD5Q6ZNL6 1462 aa15.24■□□□□ 0.03
SMPD4-209ENST00000439886 C20orf194Q5TEA3 1177 aa15.23■□□□□ 0.03
SMPD4-209ENST00000439886 DCAF11Q8TEB1 546 aa15.22■□□□□ 0.03
SMPD4-209ENST00000439886 GZF1Q9H116 711 aaPredicted RBP15.22■□□□□ 0.03
SMPD4-209ENST00000439886 WASHC2CQ9Y4E1 1318 aa15.22■□□□□ 0.03
SMPD4-209ENST00000439886 FYCO1Q9BQS8 1478 aa15.2■□□□□ 0.02
SMPD4-209ENST00000439886 RAD54L2Q9Y4B4 1467 aa15.2■□□□□ 0.02
SMPD4-209ENST00000439886 RNF123Q5XPI4 1314 aa15.2■□□□□ 0.02
SMPD4-209ENST00000439886 CANXP27824 592 aaKnown RBP15.2■□□□□ 0.02
SMPD4-209ENST00000439886 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.2■□□□□ 0.024e-10■■■■■ 33.4
SMPD4-209ENST00000439886 MYBBP1AQ9BQG0 1328 aaKnown RBP15.2■□□□□ 0.02
SMPD4-209ENST00000439886 TDRD9Q8NDG6 1382 aaKnown RBP15.18■□□□□ 0.02
SMPD4-209ENST00000439886 FAM161AQ3B820 660 aa15.16■□□□□ 0.02
SMPD4-209ENST00000439886 NLRP13Q86W25 1043 aa15.16■□□□□ 0.02
SMPD4-209ENST00000439886 POGKQ9P215 609 aa15.16■□□□□ 0.02
SMPD4-209ENST00000439886 KIF15Q9NS87 1388 aa15.16■□□□□ 0.02
SMPD4-209ENST00000439886 RALBP1Q15311 655 aa15.16■□□□□ 0.02
SMPD4-209ENST00000439886 WDR43Q15061 677 aaKnown RBP eCLIP15.15■□□□□ 0.02
SMPD4-209ENST00000439886 DHX29Q7Z478 1369 aaKnown RBP15.15■□□□□ 0.02
SMPD4-209ENST00000439886 PAXIP1Q6ZW49 1069 aaPredicted RBP15.13■□□□□ 0.01
SMPD4-209ENST00000439886 KDM5BQ9UGL1 1544 aa15.13■□□□□ 0.01
SMPD4-209ENST00000439886 KTN1Q86UP2 1357 aaKnown RBP15.12■□□□□ 0.01
SMPD4-209ENST00000439886 ANKRD30BQ9BXX2 1392 aa15.12■□□□□ 0.01
SMPD4-209ENST00000439886 HSP90AA1P07900 732 aaKnown RBP15.11■□□□□ 0.01
SMPD4-209ENST00000439886 PDE3BQ13370 1112 aa15.11■□□□□ 0.01
SMPD4-209ENST00000439886 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.11■□□□□ 0.01
SMPD4-209ENST00000439886 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.11■□□□□ 0.011e-6■■■□□ 16.8
SMPD4-209ENST00000439886 TAF7LQ5H9L4 462 aa15.11■□□□□ 0.01
SMPD4-209ENST00000439886 CFDP1Q9UEE9 299 aaPredicted RBP15.11■□□□□ 0.01
SMPD4-209ENST00000439886 NESP48681 1621 aa15.11■□□□□ 0.01
SMPD4-209ENST00000439886 CFAP43Q8NDM7 1665 aa15.1■□□□□ 0.01
SMPD4-209ENST00000439886 CCDC146Q8IYE0 955 aa15.1■□□□□ 0.01
SMPD4-209ENST00000439886 CADPSQ9ULU8 1353 aa15.09■□□□□ 0.01
SMPD4-209ENST00000439886 BECN1Q14457 450 aa15.09■□□□□ 0.01
SMPD4-209ENST00000439886 CENPQQ7L2Z9 268 aaPredicted RBP15.09■□□□□ 0.01
SMPD4-209ENST00000439886 FAM43AQ8N2R8 423 aa15.08■□□□□ 0.01
SMPD4-209ENST00000439886 BRD4O60885 1362 aaPredicted RBP15.07■□□□□ 0
SMPD4-209ENST00000439886 NEUROD2Q15784 382 aa15.07■□□□□ 0
SMPD4-209ENST00000439886 PNNQ9H307 717 aaKnown RBP15.07■□□□□ 0
SMPD4-209ENST00000439886 PANK3Q9H999 370 aa15.06■□□□□ 0
SMPD4-209ENST00000439886 KDM6BO15054 1643 aa15.06■□□□□ 0
SMPD4-209ENST00000439886 UPF2Q9HAU5 1272 aaKnown RBP15.06■□□□□ 0
SMPD4-209ENST00000439886 ADAMTS8Q9UP79 889 aa15.06■□□□□ 0
SMPD4-209ENST00000439886 ROCK2O75116 1388 aaKnown RBP15.06■□□□□ 0
SMPD4-209ENST00000439886 RPRD2Q5VT52 1461 aaKnown RBP15.05■□□□□ -0
SMPD4-209ENST00000439886 RRP9O43818 475 aaKnown RBP15.04■□□□□ -0
SMPD4-209ENST00000439886 DENND4BO75064 1496 aaPredicted RBP15.03■□□□□ -0
SMPD4-209ENST00000439886 NUP155O75694 1391 aa15.03■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms