RNA–Protein interactions for RNA: ENST00000395454.6

SCAF11-204, Transcript of SR-related CTD associated factor 11, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCAF11, Length 1,931 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-204ENST00000395454 PLCH2O75038 1416 aa22.82■■□□□ 1.24
SCAF11-204ENST00000395454 PREX2Q70Z35 1606 aa22.82■■□□□ 1.24
SCAF11-204ENST00000395454 MYOM3Q5VTT5 1437 aa22.82■■□□□ 1.24
SCAF11-204ENST00000395454 ARHGAP5Q13017 1502 aa22.81■■□□□ 1.24
SCAF11-204ENST00000395454 CDC42BPBQ9Y5S2 1711 aa22.81■■□□□ 1.24
SCAF11-204ENST00000395454 CFDP1Q9UEE9 299 aaPredicted RBP22.81■■□□□ 1.24
SCAF11-204ENST00000395454 ZNF777Q9ULD5 760 aaPredicted RBP22.78■■□□□ 1.24
SCAF11-204ENST00000395454 FANCAO15360 1455 aa22.77■■□□□ 1.24
SCAF11-204ENST00000395454 ARAP3Q8WWN8 1544 aa22.77■■□□□ 1.23
SCAF11-204ENST00000395454 EFCAB2Q5VUJ9 269 aa22.76■■□□□ 1.23
SCAF11-204ENST00000395454 PPRC1Q5VV67 1664 aaKnown RBP22.75■■□□□ 1.23
SCAF11-204ENST00000395454 FGD6Q6ZV73 1430 aa22.74■■□□□ 1.23
SCAF11-204ENST00000395454 MIA2Q96PC5 1412 aa22.74■■□□□ 1.23
SCAF11-204ENST00000395454 TEX14Q8IWB6 1497 aa22.74■■□□□ 1.23
SCAF11-204ENST00000395454 ZNF644Q9H582 1327 aaPredicted RBP22.71■■□□□ 1.23
SCAF11-204ENST00000395454 CFAP74Q9C0B2 1584 aa22.7■■□□□ 1.22
SCAF11-204ENST00000395454 PTPN23Q9H3S7 1636 aa22.69■■□□□ 1.22
SCAF11-204ENST00000395454 SAMD9LQ8IVG5 1584 aa22.69■■□□□ 1.22
SCAF11-204ENST00000395454 AKNAQ7Z591 1439 aa22.68■■□□□ 1.22
SCAF11-204ENST00000395454 FAM50AQ14320 339 aaKnown RBP22.68■■□□□ 1.22
SCAF11-204ENST00000395454 CAMSAP2Q08AD1 1489 aa22.68■■□□□ 1.22
SCAF11-204ENST00000395454 NEO1Q92859 1461 aa22.68■■□□□ 1.22
SCAF11-204ENST00000395454 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.68■■□□□ 1.22
SCAF11-204ENST00000395454 ADGRL1O94910 1474 aa22.66■■□□□ 1.22
SCAF11-204ENST00000395454 CCER1Q8TC90 406 aaPredicted RBP22.66■■□□□ 1.22
SCAF11-204ENST00000395454 ABCC1P33527 1531 aa22.63■■□□□ 1.21
SCAF11-204ENST00000395454 SYCP2Q9BX26 1530 aa22.63■■□□□ 1.21
SCAF11-204ENST00000395454 TCOF1Q13428 1488 aaKnown RBP22.63■■□□□ 1.21
SCAF11-204ENST00000395454 PLEKHH2Q8IVE3 1493 aa22.62■■□□□ 1.21
SCAF11-204ENST00000395454 HNRNPMP52272 730 aaKnown RBP eCLIP22.62■■□□□ 1.21
SCAF11-204ENST00000395454 SCAPERQ9BY12 1400 aa22.61■■□□□ 1.21
SCAF11-204ENST00000395454 KIAA1107Q9UPP5 1409 aa22.6■■□□□ 1.21
SCAF11-204ENST00000395454 ARHGEF12Q9NZN5 1544 aa22.59■■□□□ 1.21
SCAF11-204ENST00000395454 MBD5Q9P267 1494 aa22.56■■□□□ 1.2
SCAF11-204ENST00000395454 ITGAEP38570 1179 aa22.56■■□□□ 1.2
SCAF11-204ENST00000395454 RAPGEF3O95398 923 aa22.55■■□□□ 1.2
SCAF11-204ENST00000395454 DENND4BO75064 1496 aaPredicted RBP22.55■■□□□ 1.2
SCAF11-204ENST00000395454 TRAPPC8Q9Y2L5 1435 aa22.55■■□□□ 1.2
SCAF11-204ENST00000395454 AFAP1Q8N556 730 aa22.54■■□□□ 1.2
SCAF11-204ENST00000395454 POGZQ7Z3K3 1410 aa22.53■■□□□ 1.2
SCAF11-204ENST00000395454 COL17A1Q9UMD9 1497 aaPredicted RBP22.53■■□□□ 1.2
SCAF11-204ENST00000395454 ZNF518AQ6AHZ1 1483 aa22.52■■□□□ 1.2
SCAF11-204ENST00000395454 CCDC141Q6ZP82 1450 aa22.52■■□□□ 1.2
SCAF11-204ENST00000395454 ARHGEF5Q12774 1597 aa22.52■■□□□ 1.2
SCAF11-204ENST00000395454 RSPH4AQ5TD94 716 aa22.52■■□□□ 1.2
SCAF11-204ENST00000395454 KDM6BO15054 1643 aa22.51■■□□□ 1.19
SCAF11-204ENST00000395454 DNMT1P26358 1616 aaKnown RBP22.51■■□□□ 1.19
SCAF11-204ENST00000395454 DAPK1P53355 1430 aa22.51■■□□□ 1.19
SCAF11-204ENST00000395454 ABCC5O15440 1437 aa22.5■■□□□ 1.19
SCAF11-204ENST00000395454 RICTORQ6R327 1708 aa22.5■■□□□ 1.19
SCAF11-204ENST00000395454 TSPY4P0CV99 314 aa22.49■■□□□ 1.19
SCAF11-204ENST00000395454 TSPY10P0CW01 314 aa22.49■■□□□ 1.19
SCAF11-204ENST00000395454 MYT1LQ9UL68 1186 aa22.47■■□□□ 1.19
SCAF11-204ENST00000395454 CLSPNQ9HAW4 1339 aa22.47■■□□□ 1.19
SCAF11-204ENST00000395454 FRMPD1Q5SYB0 1578 aa22.47■■□□□ 1.19
SCAF11-204ENST00000395454 CHIC2Q9UKJ5 165 aa22.46■■□□□ 1.19
SCAF11-204ENST00000395454 CROCC2H7BZ55 1655 aa22.46■■□□□ 1.19
SCAF11-204ENST00000395454 SPAG9O60271 1321 aaKnown RBP22.45■■□□□ 1.19
SCAF11-204ENST00000395454 KDM5CP41229 1560 aa22.45■■□□□ 1.18
SCAF11-204ENST00000395454 PTPRKQ15262 1439 aa22.44■■□□□ 1.18
SCAF11-204ENST00000395454 C9orf84Q5VXU9 1444 aa22.44■■□□□ 1.18
SCAF11-204ENST00000395454 DHX57Q6P158 1386 aaKnown RBP22.43■■□□□ 1.18
SCAF11-204ENST00000395454 SHANK2Q9UPX8 1470 aa22.42■■□□□ 1.18
SCAF11-204ENST00000395454 HECW2Q9P2P5 1572 aa22.41■■□□□ 1.18
SCAF11-204ENST00000395454 ZMYM4Q5VZL5 1548 aa22.39■■□□□ 1.18
SCAF11-204ENST00000395454 ZFYVE16Q7Z3T8 1539 aa22.39■■□□□ 1.18
SCAF11-204ENST00000395454 ATP7AQ04656 1500 aa22.39■■□□□ 1.17
SCAF11-204ENST00000395454 SETD5Q9C0A6 1442 aa22.38■■□□□ 1.17
SCAF11-204ENST00000395454 MLH3Q9UHC1 1453 aa22.38■■□□□ 1.17
SCAF11-204ENST00000395454 INO80Q9ULG1 1556 aaPredicted RBP22.38■■□□□ 1.17
SCAF11-204ENST00000395454 MAST1Q9Y2H9 1570 aa22.37■■□□□ 1.17
SCAF11-204ENST00000395454 KIDINS220Q9ULH0 1771 aa22.37■■□□□ 1.17
SCAF11-204ENST00000395454 RTEL1-TNFRSF6BF6WH68 1400 aa22.37■■□□□ 1.17
SCAF11-204ENST00000395454 RAB3GAP2Q9H2M9 1393 aa22.36■■□□□ 1.17
SCAF11-204ENST00000395454 ADGBQ8N7X0 1667 aa22.35■■□□□ 1.17
SCAF11-204ENST00000395454 ANKRD30AQ9BXX3 1397 aa22.35■■□□□ 1.17
SCAF11-204ENST00000395454 MAGI2Q86UL8 1455 aa22.35■■□□□ 1.17
SCAF11-204ENST00000395454 YEATS2Q9ULM3 1422 aa22.34■■□□□ 1.17
SCAF11-204ENST00000395454 RRP7BPQ9NSQ0 103 aa22.34■■□□□ 1.17
SCAF11-204ENST00000395454 NCOA1Q15788 1441 aa22.33■■□□□ 1.17
SCAF11-204ENST00000395454 ADGRL2O95490 1459 aa22.32■■□□□ 1.16
SCAF11-204ENST00000395454 ROCK1Q13464 1354 aa22.32■■□□□ 1.16
SCAF11-204ENST00000395454 PLXNC1O60486 1568 aa22.31■■□□□ 1.16
SCAF11-204ENST00000395454 ABCA6Q8N139 1617 aa22.31■■□□□ 1.16
SCAF11-204ENST00000395454 KIF15Q9NS87 1388 aa22.31■■□□□ 1.16
SCAF11-204ENST00000395454 HFM1A2PYH4 1435 aa22.3■■□□□ 1.16
SCAF11-204ENST00000395454 DIP2CQ9Y2E4 1556 aa22.28■■□□□ 1.16
SCAF11-204ENST00000395454 ARHGEF40Q8TER5 1519 aa22.28■■□□□ 1.16
SCAF11-204ENST00000395454 GCC2Q8IWJ2 1684 aa22.24■■□□□ 1.15
SCAF11-204ENST00000395454 ATP10AO60312 1499 aa22.24■■□□□ 1.15
SCAF11-204ENST00000395454 A2MP01023 1474 aa22.24■■□□□ 1.15
SCAF11-204ENST00000395454 NAIPQ13075 1403 aa22.24■■□□□ 1.15
SCAF11-204ENST00000395454 DUOX2Q9NRD8 1548 aa22.23■■□□□ 1.15
SCAF11-204ENST00000395454 DHX29Q7Z478 1369 aaKnown RBP22.21■■□□□ 1.15
SCAF11-204ENST00000395454 ANKRD50Q9ULJ7 1429 aa22.21■■□□□ 1.15
SCAF11-204ENST00000395454 ERBINQ96RT1 1412 aa22.18■■□□□ 1.14
SCAF11-204ENST00000395454 REREQ9P2R6 1566 aa22.16■■□□□ 1.14
SCAF11-204ENST00000395454 ARID4BQ4LE39 1312 aaPredicted RBP22.15■■□□□ 1.14
SCAF11-204ENST00000395454 KIF3BO15066 747 aa22.15■■□□□ 1.14
SCAF11-204ENST00000395454 SIGLEC1Q9BZZ2 1709 aa22.15■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms