RNA–Protein interactions for RNA: ENST00000393310.5

LIMS1-203, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 4,392 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-203ENST00000393310 PROSER2Q86WR7 435 aaPredicted RBP11.65□□□□□ -0.54
LIMS1-203ENST00000393310 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.65□□□□□ -0.54
LIMS1-203ENST00000393310 ADGRL1O94910 1474 aa11.65□□□□□ -0.55
LIMS1-203ENST00000393310 CEP170Q5SW79 1584 aa11.64□□□□□ -0.55
LIMS1-203ENST00000393310 ACIN1Q9UKV3 1341 aaKnown RBP11.64□□□□□ -0.55
LIMS1-203ENST00000393310 NEFLP07196 543 aa11.64□□□□□ -0.55
LIMS1-203ENST00000393310 ZNF326Q5BKZ1 582 aaKnown RBP11.64□□□□□ -0.55
LIMS1-203ENST00000393310 WDR7Q9Y4E6 1490 aa11.64□□□□□ -0.55
LIMS1-203ENST00000393310 IGF1RP08069 1367 aa11.64□□□□□ -0.55
LIMS1-203ENST00000393310 ERCC6L2Q5T890 1561 aa11.64□□□□□ -0.55
LIMS1-203ENST00000393310 NUTM2BA6NNL0 878 aaPredicted RBP11.63□□□□□ -0.55
LIMS1-203ENST00000393310 NUTM2EB1AL46 878 aaPredicted RBP11.63□□□□□ -0.55
LIMS1-203ENST00000393310 NUTM2DQ5VT03 806 aaPredicted RBP11.63□□□□□ -0.55
LIMS1-203ENST00000393310 NUTM2AQ8IVF1 878 aaPredicted RBP11.63□□□□□ -0.55
LIMS1-203ENST00000393310 PODXL2Q9NZ53 605 aa11.63□□□□□ -0.55
LIMS1-203ENST00000393310 KIF3BO15066 747 aa11.62□□□□□ -0.55
LIMS1-203ENST00000393310 CHD1O14646 1710 aa11.61□□□□□ -0.55
LIMS1-203ENST00000393310 ZNF772Q68DY9 489 aaPredicted RBP11.59□□□□□ -0.55
LIMS1-203ENST00000393310 SCAPERQ9BY12 1400 aa11.58□□□□□ -0.56
LIMS1-203ENST00000393310 FAM50AQ14320 339 aaKnown RBP11.58□□□□□ -0.56
LIMS1-203ENST00000393310 CUX1P39880 1505 aa11.58□□□□□ -0.56
LIMS1-203ENST00000393310 SLC4A1APQ9BWU0 796 aaKnown RBP11.58□□□□□ -0.56
LIMS1-203ENST00000393310 PLEKHH2Q8IVE3 1493 aa11.58□□□□□ -0.56
LIMS1-203ENST00000393310 HOMEZQ8IX15 550 aa11.57□□□□□ -0.56
LIMS1-203ENST00000393310 KDM4FA0A1W2PPD8 638 aa11.57□□□□□ -0.56
LIMS1-203ENST00000393310 ZRANB1Q9UGI0 708 aa11.57□□□□□ -0.56
LIMS1-203ENST00000393310 PPP1R1BQ9UD71 204 aaPredicted RBP11.56□□□□□ -0.56
LIMS1-203ENST00000393310 NEO1Q92859 1461 aa11.56□□□□□ -0.56
LIMS1-203ENST00000393310 IQGAP2Q13576 1575 aa11.55□□□□□ -0.56
LIMS1-203ENST00000393310 ARXQ96QS3 562 aa11.55□□□□□ -0.56
LIMS1-203ENST00000393310 CCDC18Q5T9S5 1454 aa11.55□□□□□ -0.56
LIMS1-203ENST00000393310 LMOD2Q6P5Q4 547 aa11.55□□□□□ -0.56
LIMS1-203ENST00000393310 CUL7Q14999 1698 aa11.54□□□□□ -0.56
LIMS1-203ENST00000393310 TRIM52Q96A61 297 aa11.54□□□□□ -0.56
LIMS1-203ENST00000393310 TULP1O00294 542 aaPredicted RBP11.54□□□□□ -0.56
LIMS1-203ENST00000393310 YEATS2Q9ULM3 1422 aa11.54□□□□□ -0.56
LIMS1-203ENST00000393310 MAPKBP1O60336 1514 aa11.53□□□□□ -0.56
LIMS1-203ENST00000393310 TXNDC2Q86VQ3 553 aa11.53□□□□□ -0.56
LIMS1-203ENST00000393310 POLR3GLQ9BT43 218 aa11.53□□□□□ -0.56
LIMS1-203ENST00000393310 ADAMTS12P58397 1594 aa11.52□□□□□ -0.56
LIMS1-203ENST00000393310 PTPRKQ15262 1439 aa11.52□□□□□ -0.57
LIMS1-203ENST00000393310 CEP162Q5TB80 1403 aa11.52□□□□□ -0.57
LIMS1-203ENST00000393310 TIMELESSQ9UNS1 1208 aa11.52□□□□□ -0.57
LIMS1-203ENST00000393310 CLASP1Q7Z460 1538 aa11.51□□□□□ -0.57
LIMS1-203ENST00000393310 UHRF1BP1LA0JNW5 1464 aa11.51□□□□□ -0.57
LIMS1-203ENST00000393310 PRDM2Q13029 1718 aa11.5□□□□□ -0.57
LIMS1-203ENST00000393310 CCER1Q8TC90 406 aaPredicted RBP11.5□□□□□ -0.57
LIMS1-203ENST00000393310 MSH6P52701 1360 aa11.49□□□□□ -0.57
LIMS1-203ENST00000393310 EFCAB5A4FU69 1503 aa11.48□□□□□ -0.57
LIMS1-203ENST00000393310 MAGI2Q86UL8 1455 aa11.48□□□□□ -0.57
LIMS1-203ENST00000393310 CADPS2Q86UW7 1296 aa11.48□□□□□ -0.57
LIMS1-203ENST00000393310 FAM135AQ9P2D6 1515 aa11.46□□□□□ -0.57
LIMS1-203ENST00000393310 C9orf84Q5VXU9 1444 aa11.46□□□□□ -0.58
LIMS1-203ENST00000393310 ARHGAP5Q13017 1502 aa11.46□□□□□ -0.58
LIMS1-203ENST00000393310 TARBP1Q13395 1621 aaKnown RBP11.46□□□□□ -0.58
LIMS1-203ENST00000393310 CEBPAP49715 358 aaPredicted RBP11.45□□□□□ -0.58
LIMS1-203ENST00000393310 NPM2Q86SE8 214 aaKnown RBP11.45□□□□□ -0.58
LIMS1-203ENST00000393310 EPRSP07814 1512 aaKnown RBP11.44□□□□□ -0.58
LIMS1-203ENST00000393310 NBPF8Q3BBV2 869 aa11.44□□□□□ -0.58
LIMS1-203ENST00000393310 NBPF14Q5TI25 921 aa11.44□□□□□ -0.58
LIMS1-203ENST00000393310 ATP10AO60312 1499 aa11.44□□□□□ -0.58
LIMS1-203ENST00000393310 TPRNQ4KMQ1 711 aa11.43□□□□□ -0.58
LIMS1-203ENST00000393310 MAGI3Q5TCQ9 1506 aa11.43□□□□□ -0.58
LIMS1-203ENST00000393310 RXRBP28702 533 aa11.42□□□□□ -0.58
LIMS1-203ENST00000393310 ITGAEP38570 1179 aa11.42□□□□□ -0.58
LIMS1-203ENST00000393310 TRAPPC8Q9Y2L5 1435 aa11.41□□□□□ -0.58
LIMS1-203ENST00000393310 HNRNPMP52272 730 aaKnown RBP eCLIP11.41□□□□□ -0.585e-8■■■■■ 27.1
LIMS1-203ENST00000393310 PSME1Q06323 249 aa11.41□□□□□ -0.58
LIMS1-203ENST00000393310 TNRQ92752 1358 aa11.4□□□□□ -0.58
LIMS1-203ENST00000393310 AFAP1Q8N556 730 aa11.4□□□□□ -0.58
LIMS1-203ENST00000393310 TSPOAP1O95153 1857 aa11.39□□□□□ -0.59
LIMS1-203ENST00000393310 PBRM1Q86U86 1689 aa11.39□□□□□ -0.59
LIMS1-203ENST00000393310 TAOK2Q9UL54 1235 aa11.39□□□□□ -0.59
LIMS1-203ENST00000393310 CFAP74Q9C0B2 1584 aa11.39□□□□□ -0.59
LIMS1-203ENST00000393310 BAG6P46379 1132 aa11.38□□□□□ -0.59
LIMS1-203ENST00000393310 PTPRMP28827 1452 aa11.37□□□□□ -0.59
LIMS1-203ENST00000393310 ZNF518AQ6AHZ1 1483 aa11.37□□□□□ -0.59
LIMS1-203ENST00000393310 POGKQ9P215 609 aa11.37□□□□□ -0.59
LIMS1-203ENST00000393310 NCKAP5LQ9HCH0 1330 aa11.37□□□□□ -0.59
LIMS1-203ENST00000393310 SLC52A1Q9NWF4 448 aa11.36□□□□□ -0.59
LIMS1-203ENST00000393310 ZFYVE16Q7Z3T8 1539 aa11.36□□□□□ -0.59
LIMS1-203ENST00000393310 C11orf95C9JLR9 678 aaPredicted RBP11.35□□□□□ -0.59
LIMS1-203ENST00000393310 EVA1CP58658 441 aa11.35□□□□□ -0.59
LIMS1-203ENST00000393310 LRRC59Q96AG4 307 aaKnown RBP11.34□□□□□ -0.59
LIMS1-203ENST00000393310 LRPPRCP42704 1394 aaKnown RBP11.34□□□□□ -0.59
LIMS1-203ENST00000393310 PTPRTO14522 1441 aa11.33□□□□□ -0.6
LIMS1-203ENST00000393310 CFAP43Q8NDM7 1665 aa11.33□□□□□ -0.6
LIMS1-203ENST00000393310 KDM5BQ9UGL1 1544 aa11.33□□□□□ -0.6
LIMS1-203ENST00000393310 GLI2P10070 1586 aa11.32□□□□□ -0.6
LIMS1-203ENST00000393310 CLSPNQ9HAW4 1339 aa11.32□□□□□ -0.6
LIMS1-203ENST00000393310 ANKRD30AQ9BXX3 1397 aa11.32□□□□□ -0.6
LIMS1-203ENST00000393310 FHOD3Q2V2M9 1422 aa11.32□□□□□ -0.6
LIMS1-203ENST00000393310 PLEKHG5O94827 1062 aa11.31□□□□□ -0.6
LIMS1-203ENST00000393310 TROQ12816 1431 aaPredicted RBP11.31□□□□□ -0.6
LIMS1-203ENST00000393310 CCDC125Q86Z20 511 aa11.3□□□□□ -0.6
LIMS1-203ENST00000393310 ZBTB7CA1YPR0 619 aa11.3□□□□□ -0.6
LIMS1-203ENST00000393310 ABCA5Q8WWZ7 1642 aa11.29□□□□□ -0.6
LIMS1-203ENST00000393310 VGFO15240 615 aaPredicted RBP11.28□□□□□ -0.6
LIMS1-203ENST00000393310 DIP2BQ9P265 1576 aa11.28□□□□□ -0.6
LIMS1-203ENST00000393310 UGGT2Q9NYU1 1516 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms