RNA–Protein interactions for RNA: ENST00000393077.2

VTI1A-201, Transcript of vesicle transport through interaction with t-SNAREs 1A, humanhuman

APPRIS P1 TSL 2 BASIC

Gene VTI1A, Length 4,131 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1A-201ENST00000393077 MSNP26038 577 aaKnown RBP9.9□□□□□ -0.83
VTI1A-201ENST00000393077 MAP7D2Q96T17 732 aa9.89□□□□□ -0.83
VTI1A-201ENST00000393077 GZF1Q9H116 711 aaPredicted RBP9.89□□□□□ -0.83
VTI1A-201ENST00000393077 UNC13AQ9UPW8 1703 aa9.89□□□□□ -0.83
VTI1A-201ENST00000393077 UPF2Q9HAU5 1272 aaKnown RBP9.88□□□□□ -0.83
VTI1A-201ENST00000393077 CHMP4BQ9H444 224 aaKnown RBP9.88□□□□□ -0.83
VTI1A-201ENST00000393077 FRAT2O75474 233 aaPredicted RBP9.86□□□□□ -0.83
VTI1A-201ENST00000393077 CALD1Q05682 793 aaKnown RBP9.86□□□□□ -0.83
VTI1A-201ENST00000393077 RRP7BPQ9NSQ0 103 aa9.85□□□□□ -0.83
VTI1A-201ENST00000393077 ZHX1Q9UKY1 873 aaPredicted RBP9.85□□□□□ -0.83
VTI1A-201ENST00000393077 NESP48681 1621 aa9.85□□□□□ -0.83
VTI1A-201ENST00000393077 SYNJ1O43426 1573 aa9.85□□□□□ -0.83
VTI1A-201ENST00000393077 CFTRP13569 1480 aa9.84□□□□□ -0.83
VTI1A-201ENST00000393077 RAD54L2Q9Y4B4 1467 aa9.84□□□□□ -0.83
VTI1A-201ENST00000393077 IGF1RP08069 1367 aa9.83□□□□□ -0.84
VTI1A-201ENST00000393077 FGD5Q6ZNL6 1462 aa9.83□□□□□ -0.84
VTI1A-201ENST00000393077 SLKQ9H2G2 1235 aaPredicted RBP9.83□□□□□ -0.84
VTI1A-201ENST00000393077 CC2D2AQ9P2K1 1620 aa9.83□□□□□ -0.84
VTI1A-201ENST00000393077 SENP3-EIF4A1A0A087X0R7 540 aa9.82□□□□□ -0.84
VTI1A-201ENST00000393077 TONSLQ96HA7 1378 aa9.82□□□□□ -0.84
VTI1A-201ENST00000393077 MTERF4Q7Z6M4 381 aaKnown RBP9.8□□□□□ -0.84
VTI1A-201ENST00000393077 PLCD3Q8N3E9 789 aa9.8□□□□□ -0.84
VTI1A-201ENST00000393077 RRAGDQ9NQL2 400 aaPredicted RBP9.8□□□□□ -0.84
VTI1A-201ENST00000393077 FHAD1B1AJZ9 1412 aa9.8□□□□□ -0.84
VTI1A-201ENST00000393077 KLHL34Q8N239 644 aa9.8□□□□□ -0.84
VTI1A-201ENST00000393077 CCNB3Q8WWL7 1395 aa9.8□□□□□ -0.84
VTI1A-201ENST00000393077 MS4A1P11836 297 aa9.8□□□□□ -0.84
VTI1A-201ENST00000393077 CLCN1P35523 988 aa9.8□□□□□ -0.84
VTI1A-201ENST00000393077 HMGXB3Q12766 1538 aa9.79□□□□□ -0.84
VTI1A-201ENST00000393077 FHOD3Q2V2M9 1422 aa9.79□□□□□ -0.84
VTI1A-201ENST00000393077 KIAA1211Q6ZU35 1233 aa9.79□□□□□ -0.84
VTI1A-201ENST00000393077 APPP05067 770 aa9.79□□□□□ -0.84
VTI1A-201ENST00000393077 ESPNB1AK53 854 aa9.78□□□□□ -0.84
VTI1A-201ENST00000393077 PRDM10Q9NQV6 1147 aa9.78□□□□□ -0.84
VTI1A-201ENST00000393077 PLEKHD1A6NEE1 506 aa9.78□□□□□ -0.84
VTI1A-201ENST00000393077 PDZRN4Q6ZMN7 1036 aaPredicted RBP9.78□□□□□ -0.84
VTI1A-201ENST00000393077 TNNT3P45378 269 aaPredicted RBP9.77□□□□□ -0.84
VTI1A-201ENST00000393077 DHX57Q6P158 1386 aaKnown RBP9.76□□□□□ -0.85
VTI1A-201ENST00000393077 MAPK8IP2Q13387 824 aaPredicted RBP9.76□□□□□ -0.85
VTI1A-201ENST00000393077 TMC1Q8TDI8 760 aa9.76□□□□□ -0.85
VTI1A-201ENST00000393077 CUX1P39880 1505 aa9.76□□□□□ -0.85
VTI1A-201ENST00000393077 CFDP1Q9UEE9 299 aaPredicted RBP9.75□□□□□ -0.85
VTI1A-201ENST00000393077 TSPY4P0CV99 314 aa9.75□□□□□ -0.85
VTI1A-201ENST00000393077 TSPY10P0CW01 314 aa9.75□□□□□ -0.85
VTI1A-201ENST00000393077 PTMSP20962 102 aa9.75□□□□□ -0.85
VTI1A-201ENST00000393077 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.75□□□□□ -0.854e-7■■■■□ 22.4
VTI1A-201ENST00000393077 BACH2Q9BYV9 841 aa9.75□□□□□ -0.85
VTI1A-201ENST00000393077 NUDCQ9Y266 331 aa9.75□□□□□ -0.85
VTI1A-201ENST00000393077 PTMAP06454 111 aaKnown RBP9.75□□□□□ -0.85
VTI1A-201ENST00000393077 PEG3Q9GZU2 1588 aa9.75□□□□□ -0.85
VTI1A-201ENST00000393077 DCAF11Q8TEB1 546 aa9.75□□□□□ -0.85
VTI1A-201ENST00000393077 R3HCC1Q9Y3T6 440 aaKnown RBP9.75□□□□□ -0.85
VTI1A-201ENST00000393077 POGKQ9P215 609 aa9.74□□□□□ -0.85
VTI1A-201ENST00000393077 MRE11P49959 708 aa9.74□□□□□ -0.85
VTI1A-201ENST00000393077 ZNF771Q7L3S4 317 aaPredicted RBP9.74□□□□□ -0.85
VTI1A-201ENST00000393077 PPP1R15AO75807 674 aaPredicted RBP9.73□□□□□ -0.85
VTI1A-201ENST00000393077 ZBED9Q6R2W3 1325 aa9.73□□□□□ -0.85
VTI1A-201ENST00000393077 GOLGA6L22H0YM25 854 aa9.72□□□□□ -0.85
VTI1A-201ENST00000393077 NPM1P06748 294 aaKnown RBP eCLIP9.72□□□□□ -0.85
VTI1A-201ENST00000393077 SPRYD3Q8NCJ5 442 aa9.72□□□□□ -0.85
VTI1A-201ENST00000393077 IPO4Q8TEX9 1081 aaKnown RBP9.72□□□□□ -0.85
VTI1A-201ENST00000393077 AQRO60306 1485 aaKnown RBP eCLIP9.71□□□□□ -0.85
VTI1A-201ENST00000393077 GAPVD1Q14C86 1478 aa9.71□□□□□ -0.85
VTI1A-201ENST00000393077 SLC4A1APQ9BWU0 796 aaKnown RBP9.71□□□□□ -0.85
VTI1A-201ENST00000393077 TOP2BQ02880 1626 aa9.71□□□□□ -0.85
VTI1A-201ENST00000393077 VGLL3A8MV65 326 aa9.71□□□□□ -0.86
VTI1A-201ENST00000393077 HAP1P54257 671 aaPredicted RBP9.71□□□□□ -0.86
VTI1A-201ENST00000393077 ZBTB7CA1YPR0 619 aa9.7□□□□□ -0.86
VTI1A-201ENST00000393077 SMAP1Q8IYB5 467 aaPredicted RBP9.7□□□□□ -0.86
VTI1A-201ENST00000393077 FMN1Q68DA7 1419 aa9.7□□□□□ -0.86
VTI1A-201ENST00000393077 TAF3Q5VWG9 929 aa9.69□□□□□ -0.86
VTI1A-201ENST00000393077 BRD2P25440 801 aaKnown RBP9.69□□□□□ -0.86
VTI1A-201ENST00000393077 EXOC6Q8TAG9 804 aa9.69□□□□□ -0.86
VTI1A-201ENST00000393077 PRXQ9BXM0 1461 aa9.69□□□□□ -0.86
VTI1A-201ENST00000393077 EIF4G2P78344 907 aaKnown RBP eCLIP9.68□□□□□ -0.869e-10■■□□□ 13
VTI1A-201ENST00000393077 JPH4Q96JJ6 628 aa9.68□□□□□ -0.86
VTI1A-201ENST00000393077 KIF21BO75037 1637 aa9.68□□□□□ -0.86
VTI1A-201ENST00000393077 GOLGA6L2Q8N9W4 650 aaPredicted RBP9.68□□□□□ -0.86
VTI1A-201ENST00000393077 FAM161AQ3B820 660 aa9.68□□□□□ -0.86
VTI1A-201ENST00000393077 POLA1P09884 1462 aaPredicted RBP9.68□□□□□ -0.86
VTI1A-201ENST00000393077 TOPBP1Q92547 1522 aa9.68□□□□□ -0.86
VTI1A-201ENST00000393077 KDM2AQ9Y2K7 1162 aa9.67□□□□□ -0.86
VTI1A-201ENST00000393077 E9PSI1 815 aa9.67□□□□□ -0.86
VTI1A-201ENST00000393077 AEBP1Q8IUX7 1158 aa9.67□□□□□ -0.86
VTI1A-201ENST00000393077 DHX37Q8IY37 1157 aaKnown RBP9.67□□□□□ -0.86
VTI1A-201ENST00000393077 CHMP4AQ9BY43 222 aa9.67□□□□□ -0.86
VTI1A-201ENST00000393077 ARAP1Q96P48 1450 aa9.67□□□□□ -0.86
VTI1A-201ENST00000393077 IRX3P78415 501 aaPredicted RBP9.67□□□□□ -0.86
VTI1A-201ENST00000393077 ARHGAP35Q9NRY4 1499 aa9.67□□□□□ -0.86
VTI1A-201ENST00000393077 FTSJ3Q8IY81 847 aaKnown RBP9.67□□□□□ -0.86
VTI1A-201ENST00000393077 CGNQ9P2M7 1197 aaKnown RBP9.66□□□□□ -0.86
VTI1A-201ENST00000393077 RCAN3Q9UKA8 241 aa9.66□□□□□ -0.86
VTI1A-201ENST00000393077 UQCRHLA0A096LP55 91 aa9.66□□□□□ -0.86
VTI1A-201ENST00000393077 UQCRHP07919 91 aa9.66□□□□□ -0.86
VTI1A-201ENST00000393077 PLPPR3Q6T4P5 718 aa9.65□□□□□ -0.86
VTI1A-201ENST00000393077 RAB3GAP2Q9H2M9 1393 aa9.65□□□□□ -0.86
VTI1A-201ENST00000393077 CHAF1AQ13111 956 aaPredicted RBP9.64□□□□□ -0.87
VTI1A-201ENST00000393077 CSPP1Q1MSJ5 1256 aa9.64□□□□□ -0.87
VTI1A-201ENST00000393077 PPP4R3BQ5MIZ7 849 aa9.64□□□□□ -0.87
VTI1A-201ENST00000393077 XRCC6P12956 609 aaKnown RBP eCLIP9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms