RNA–Protein interactions for RNA: ENST00000393077.2

VTI1A-201, Transcript of vesicle transport through interaction with t-SNAREs 1A, humanhuman

APPRIS P1 TSL 2 BASIC

Gene VTI1A, Length 4,131 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1A-201ENST00000393077 NISCHQ9Y2I1 1504 aa13.47□□□□□ -0.25
VTI1A-201ENST00000393077 PELP1Q8IZL8 1130 aaKnown RBP13.31□□□□□ -0.28
VTI1A-201ENST00000393077 MYT1Q01538 1121 aa13.11□□□□□ -0.31
VTI1A-201ENST00000393077 DCAF8L2P0C7V8 631 aa12.64□□□□□ -0.39
VTI1A-201ENST00000393077 HRCP23327 699 aa12.46□□□□□ -0.41
VTI1A-201ENST00000393077 TTBK1Q5TCY1 1321 aaPredicted RBP12.3□□□□□ -0.44
VTI1A-201ENST00000393077 PCGF6Q9BYE7 350 aa12.26□□□□□ -0.45
VTI1A-201ENST00000393077 SHROOM4Q9ULL8 1493 aa12.2□□□□□ -0.46
VTI1A-201ENST00000393077 PPARGC1BQ86YN6 1023 aaKnown RBP12.19□□□□□ -0.46
VTI1A-201ENST00000393077 SUPT5HO00267 1087 aaKnown RBP12.08□□□□□ -0.48
VTI1A-201ENST00000393077 CENPBP07199 599 aaPredicted RBP12.05□□□□□ -0.48
VTI1A-201ENST00000393077 SCAF1Q9H7N4 1312 aaKnown RBP12□□□□□ -0.49
VTI1A-201ENST00000393077 ERICH6Q7L0X2 663 aa11.93□□□□□ -0.5
VTI1A-201ENST00000393077 ZEB1P37275 1124 aaPredicted RBP11.91□□□□□ -0.5
VTI1A-201ENST00000393077 GTF3C3Q9Y5Q9 886 aa11.83□□□□□ -0.52
VTI1A-201ENST00000393077 BCL11AQ9H165 835 aa11.81□□□□□ -0.52
VTI1A-201ENST00000393077 ACIN1Q9UKV3 1341 aaKnown RBP11.76□□□□□ -0.53
VTI1A-201ENST00000393077 PRKCSHP14314 528 aaPredicted RBP11.63□□□□□ -0.55
VTI1A-201ENST00000393077 YTHDC1Q96MU7 727 aaKnown RBP11.61□□□□□ -0.55
VTI1A-201ENST00000393077 NEUROD1Q13562 356 aa11.6□□□□□ -0.55
VTI1A-201ENST00000393077 TRIM26Q12899 539 aaPredicted RBP11.58□□□□□ -0.55
VTI1A-201ENST00000393077 FAM9AQ8IZU1 332 aaPredicted RBP11.5□□□□□ -0.57
VTI1A-201ENST00000393077 ANP32EQ9BTT0 268 aa11.48□□□□□ -0.57
VTI1A-201ENST00000393077 EHMT2Q96KQ7 1210 aa11.44□□□□□ -0.58
VTI1A-201ENST00000393077 DIEXFQ68CQ4 756 aaKnown RBP11.43□□□□□ -0.58
VTI1A-201ENST00000393077 CCER1Q8TC90 406 aaPredicted RBP11.4□□□□□ -0.58
VTI1A-201ENST00000393077 ABCC9O60706 1549 aa11.4□□□□□ -0.59
VTI1A-201ENST00000393077 CSRNP3Q8WYN3 585 aa11.27□□□□□ -0.61
VTI1A-201ENST00000393077 CHIC1Q5VXU3 224 aa11.23□□□□□ -0.61
VTI1A-201ENST00000393077 ZCCHC6Q5VYS8 1495 aaKnown RBP11.22□□□□□ -0.61
VTI1A-201ENST00000393077 LOC105371045A0A1W2PR82 267 aa11.2□□□□□ -0.62
VTI1A-201ENST00000393077 CCDC180Q9P1Z9 1646 aa11.19□□□□□ -0.62
VTI1A-201ENST00000393077 NEFLP07196 543 aa11.18□□□□□ -0.62
VTI1A-201ENST00000393077 TRIM41Q8WV44 630 aa11.17□□□□□ -0.62
VTI1A-201ENST00000393077 APLP2Q06481 763 aa11.15□□□□□ -0.62
VTI1A-201ENST00000393077 PABPN1Q86U42 306 aaKnown RBP eCLIP11.14□□□□□ -0.63
VTI1A-201ENST00000393077 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.12□□□□□ -0.63
VTI1A-201ENST00000393077 EIF5BO60841 1220 aaKnown RBP11.09□□□□□ -0.63
VTI1A-201ENST00000393077 MYT1LQ9UL68 1186 aa11.09□□□□□ -0.63
VTI1A-201ENST00000393077 CLSPNQ9HAW4 1339 aa11.08□□□□□ -0.64
VTI1A-201ENST00000393077 BCANQ96GW7 911 aa11.08□□□□□ -0.64
VTI1A-201ENST00000393077 DCAF1Q9Y4B6 1507 aa11.08□□□□□ -0.64
VTI1A-201ENST00000393077 SLC24A1O60721 1099 aa11.06□□□□□ -0.64
VTI1A-201ENST00000393077 RTL5Q5HYW3 569 aaPredicted RBP11.04□□□□□ -0.64
VTI1A-201ENST00000393077 ZNF316A6NFI3 1004 aaPredicted RBP11.01□□□□□ -0.65
VTI1A-201ENST00000393077 ANO8Q9HCE9 1232 aaPredicted RBP10.98□□□□□ -0.65
VTI1A-201ENST00000393077 SCRIBQ14160 1630 aa10.98□□□□□ -0.65
VTI1A-201ENST00000393077 TSHZ2Q9NRE2 1034 aa10.98□□□□□ -0.65
VTI1A-201ENST00000393077 RANGAP1P46060 587 aaPredicted RBP10.95□□□□□ -0.66
VTI1A-201ENST00000393077 GLIPR1L2Q4G1C9 344 aa10.94□□□□□ -0.66
VTI1A-201ENST00000393077 SUPT16HQ9Y5B9 1047 aaKnown RBP10.93□□□□□ -0.66
VTI1A-201ENST00000393077 MYO15BQ96JP2 1530 aa10.93□□□□□ -0.66
VTI1A-201ENST00000393077 CCDC136Q96JN2 1154 aa10.92□□□□□ -0.66
VTI1A-201ENST00000393077 DEKP35659 375 aaKnown RBP10.9□□□□□ -0.66
VTI1A-201ENST00000393077 MIER1Q8N108 512 aa10.89□□□□□ -0.67
VTI1A-201ENST00000393077 UBTFP17480 764 aaKnown RBP10.87□□□□□ -0.67
VTI1A-201ENST00000393077 CDK11AQ9UQ88 783 aaPredicted RBP10.86□□□□□ -0.67
VTI1A-201ENST00000393077 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.86□□□□□ -0.67
VTI1A-201ENST00000393077 RTN4Q9NQC3 1192 aaKnown RBP10.86□□□□□ -0.67
VTI1A-201ENST00000393077 FKBP8Q14318 412 aa10.85□□□□□ -0.67
VTI1A-201ENST00000393077 NBR1Q14596 966 aa10.84□□□□□ -0.67
VTI1A-201ENST00000393077 ERICH6BQ5W0A0 696 aa10.82□□□□□ -0.68
VTI1A-201ENST00000393077 RBM19Q9Y4C8 960 aaKnown RBP10.82□□□□□ -0.68
VTI1A-201ENST00000393077 SALL2Q9Y467 1007 aaPredicted RBP10.78□□□□□ -0.68
VTI1A-201ENST00000393077 PKNOX2Q96KN3 472 aa10.78□□□□□ -0.68
VTI1A-201ENST00000393077 UBE2Q2Q8WVN8 375 aa10.77□□□□□ -0.69
VTI1A-201ENST00000393077 PODXL2Q9NZ53 605 aa10.75□□□□□ -0.69
VTI1A-201ENST00000393077 ITGAEP38570 1179 aa10.73□□□□□ -0.69
VTI1A-201ENST00000393077 NACADO15069 1562 aa10.72□□□□□ -0.69
VTI1A-201ENST00000393077 RSF1Q96T23 1441 aaPredicted RBP10.72□□□□□ -0.69
VTI1A-201ENST00000393077 RB1CC1Q8TDY2 1594 aa10.71□□□□□ -0.69
VTI1A-201ENST00000393077 DAXXQ9UER7 740 aaPredicted RBP10.69□□□□□ -0.7
VTI1A-201ENST00000393077 ATP1B4Q9UN42 357 aaPredicted RBP10.67□□□□□ -0.7
VTI1A-201ENST00000393077 CECR2Q9BXF3 1484 aa10.65□□□□□ -0.7
VTI1A-201ENST00000393077 ANP32AP39687 249 aaKnown RBP10.64□□□□□ -0.71
VTI1A-201ENST00000393077 ZBTB47Q9UFB7 747 aaPredicted RBP10.59□□□□□ -0.71
VTI1A-201ENST00000393077 HNRNPUL2Q1KMD3 747 aaKnown RBP10.58□□□□□ -0.72
VTI1A-201ENST00000393077 VSIG10Q8N0Z9 540 aa10.58□□□□□ -0.72
VTI1A-201ENST00000393077 NOP58Q9Y2X3 529 aaKnown RBP10.57□□□□□ -0.72
VTI1A-201ENST00000393077 AEBP2Q6ZN18 517 aaPredicted RBP10.56□□□□□ -0.72
VTI1A-201ENST00000393077 PLEKHG5O94827 1062 aa10.55□□□□□ -0.72
VTI1A-201ENST00000393077 NEFMP07197 916 aa10.52□□□□□ -0.73
VTI1A-201ENST00000393077 FANCIQ9NVI1 1328 aa10.52□□□□□ -0.73
VTI1A-201ENST00000393077 IL27Q8NEV9 243 aa10.52□□□□□ -0.73
VTI1A-201ENST00000393077 MROH2BQ7Z745 1585 aa10.5□□□□□ -0.73
VTI1A-201ENST00000393077 A0A0U1RQG5 324 aaPredicted RBP10.5□□□□□ -0.73
VTI1A-201ENST00000393077 TIMELESSQ9UNS1 1208 aa10.5□□□□□ -0.73
VTI1A-201ENST00000393077 NPM2Q86SE8 214 aaKnown RBP10.47□□□□□ -0.73
VTI1A-201ENST00000393077 TRIM52Q96A61 297 aa10.46□□□□□ -0.73
VTI1A-201ENST00000393077 MSH5O43196 834 aa10.46□□□□□ -0.74
VTI1A-201ENST00000393077 RSPH6AQ9H0K4 717 aa10.45□□□□□ -0.74
VTI1A-201ENST00000393077 BAZ1AQ9NRL2 1556 aaPredicted RBP10.45□□□□□ -0.74
VTI1A-201ENST00000393077 IRX6P78412 446 aaPredicted RBP10.45□□□□□ -0.74
VTI1A-201ENST00000393077 ANP32CO43423 234 aa10.41□□□□□ -0.74
VTI1A-201ENST00000393077 NAP1L5Q96NT1 182 aaPredicted RBP10.4□□□□□ -0.74
VTI1A-201ENST00000393077 BAZ1BQ9UIG0 1483 aaKnown RBP10.38□□□□□ -0.75
VTI1A-201ENST00000393077 LAS1LQ9Y4W2 734 aaKnown RBP10.38□□□□□ -0.75
VTI1A-201ENST00000393077 HSP90AA2PQ14568 343 aaPredicted RBP10.36□□□□□ -0.75
VTI1A-201ENST00000393077 PPM1GO15355 546 aaPredicted RBP10.36□□□□□ -0.75
VTI1A-201ENST00000393077 ZMYND15Q9H091 742 aa10.36□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 69.1 ms