RNA–Protein interactions for RNA: ENST00000339438.10

CSDE1-202, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 4,006 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-202ENST00000339438 ZFYVE16Q7Z3T8 1539 aa8.85□□□□□ -0.99
CSDE1-202ENST00000339438 JPH4Q96JJ6 628 aa8.84□□□□□ -0.99
CSDE1-202ENST00000339438 MBD5Q9P267 1494 aa8.84□□□□□ -0.99
CSDE1-202ENST00000339438 KDM6BO15054 1643 aa8.84□□□□□ -0.99
CSDE1-202ENST00000339438 CAMSAP2Q08AD1 1489 aa8.84□□□□□ -0.99
CSDE1-202ENST00000339438 C3P01024 1663 aa8.83□□□□□ -1
CSDE1-202ENST00000339438 NEO1Q92859 1461 aa8.83□□□□□ -1
CSDE1-202ENST00000339438 PIK3C2BO00750 1634 aa8.82□□□□□ -1
CSDE1-202ENST00000339438 SETD1AO15047 1707 aaKnown RBP8.82□□□□□ -1
CSDE1-202ENST00000339438 AGLP35573 1532 aa8.82□□□□□ -1
CSDE1-202ENST00000339438 ZEB1P37275 1124 aaPredicted RBP8.82□□□□□ -1
CSDE1-202ENST00000339438 DNMT1P26358 1616 aaKnown RBP8.82□□□□□ -1
CSDE1-202ENST00000339438 ZC3H13Q5T200 1668 aaKnown RBP8.82□□□□□ -1
CSDE1-202ENST00000339438 CCDC18Q5T9S5 1454 aa8.81□□□□□ -1
CSDE1-202ENST00000339438 FHOD3Q2V2M9 1422 aa8.81□□□□□ -1
CSDE1-202ENST00000339438 HECW2Q9P2P5 1572 aa8.81□□□□□ -1
CSDE1-202ENST00000339438 GCC2Q8IWJ2 1684 aa8.81□□□□□ -1
CSDE1-202ENST00000339438 IFT172Q9UG01 1749 aa8.81□□□□□ -1
CSDE1-202ENST00000339438 EHBP1L1Q8N3D4 1523 aa8.8□□□□□ -1
CSDE1-202ENST00000339438 FAM135AQ9P2D6 1515 aa8.8□□□□□ -1
CSDE1-202ENST00000339438 UNC13BO14795 1591 aa8.79□□□□□ -1
CSDE1-202ENST00000339438 XIRP1Q702N8 1843 aaKnown RBP8.79□□□□□ -1
CSDE1-202ENST00000339438 KDM5DQ9BY66 1539 aa8.79□□□□□ -1
CSDE1-202ENST00000339438 GTF3C3Q9Y5Q9 886 aa8.78□□□□□ -1
CSDE1-202ENST00000339438 ZNF518AQ6AHZ1 1483 aa8.76□□□□□ -1.01
CSDE1-202ENST00000339438 GPATCH8Q9UKJ3 1502 aaKnown RBP8.76□□□□□ -1.01
CSDE1-202ENST00000339438 CEP162Q5TB80 1403 aa8.76□□□□□ -1.01
CSDE1-202ENST00000339438 TTBK1Q5TCY1 1321 aaPredicted RBP8.76□□□□□ -1.01
CSDE1-202ENST00000339438 PTPRGP23470 1445 aa8.75□□□□□ -1.01
CSDE1-202ENST00000339438 CARMIL2Q6F5E8 1435 aa8.75□□□□□ -1.01
CSDE1-202ENST00000339438 LOC105371045A0A1W2PR82 267 aa8.75□□□□□ -1.01
CSDE1-202ENST00000339438 MLH3Q9UHC1 1453 aa8.74□□□□□ -1.01
CSDE1-202ENST00000339438 CSRNP3Q8WYN3 585 aa8.74□□□□□ -1.01
CSDE1-202ENST00000339438 PRDM15P57071 1507 aaPredicted RBP8.74□□□□□ -1.01
CSDE1-202ENST00000339438 PLCH2O75038 1416 aa8.74□□□□□ -1.01
CSDE1-202ENST00000339438 STRCP1A6NGW2 1772 aa8.73□□□□□ -1.01
CSDE1-202ENST00000339438 PREX1Q8TCU6 1659 aa8.73□□□□□ -1.01
CSDE1-202ENST00000339438 CLIP1P30622 1438 aa8.72□□□□□ -1.01
CSDE1-202ENST00000339438 POGZQ7Z3K3 1410 aa8.72□□□□□ -1.01
CSDE1-202ENST00000339438 MADDQ8WXG6 1647 aa8.72□□□□□ -1.01
CSDE1-202ENST00000339438 CHMP7Q8WUX9 453 aaPredicted RBP8.72□□□□□ -1.01
CSDE1-202ENST00000339438 ALKQ9UM73 1620 aa8.72□□□□□ -1.01
CSDE1-202ENST00000339438 LRRC9Q6ZRR7 1453 aa8.71□□□□□ -1.01
CSDE1-202ENST00000339438 TROQ12816 1431 aaPredicted RBP8.71□□□□□ -1.01
CSDE1-202ENST00000339438 ADGRL2O95490 1459 aa8.71□□□□□ -1.02
CSDE1-202ENST00000339438 FMN1Q68DA7 1419 aa8.71□□□□□ -1.02
CSDE1-202ENST00000339438 LMTK2Q8IWU2 1503 aa8.7□□□□□ -1.02
CSDE1-202ENST00000339438 SHANK2Q9UPX8 1470 aa8.7□□□□□ -1.02
CSDE1-202ENST00000339438 DENND4BO75064 1496 aaPredicted RBP8.7□□□□□ -1.02
CSDE1-202ENST00000339438 PTPN23Q9H3S7 1636 aa8.69□□□□□ -1.02
CSDE1-202ENST00000339438 POLR1AO95602 1720 aaPredicted RBP8.69□□□□□ -1.02
CSDE1-202ENST00000339438 NEURL4Q96JN8 1562 aa8.69□□□□□ -1.02
CSDE1-202ENST00000339438 IQGAP3Q86VI3 1631 aa8.69□□□□□ -1.02
CSDE1-202ENST00000339438 MYO3AQ8NEV4 1616 aa8.69□□□□□ -1.02
CSDE1-202ENST00000339438 CEP152O94986 1710 aa8.69□□□□□ -1.02
CSDE1-202ENST00000339438 MYO5BQ9ULV0 1848 aa8.68□□□□□ -1.02
CSDE1-202ENST00000339438 CAMSAP1Q5T5Y3 1602 aa8.68□□□□□ -1.02
CSDE1-202ENST00000339438 KIAA1107Q9UPP5 1409 aa8.68□□□□□ -1.02
CSDE1-202ENST00000339438 VPS8Q8N3P4 1428 aa8.68□□□□□ -1.02
CSDE1-202ENST00000339438 UBR1Q8IWV7 1749 aa8.67□□□□□ -1.02
CSDE1-202ENST00000339438 BCL11AQ9H165 835 aa8.67□□□□□ -1.02
CSDE1-202ENST00000339438 PHLDB1Q86UU1 1377 aa8.66□□□□□ -1.02
CSDE1-202ENST00000339438 TEX14Q8IWB6 1497 aa8.66□□□□□ -1.02
CSDE1-202ENST00000339438 FAM9AQ8IZU1 332 aaPredicted RBP8.66□□□□□ -1.02
CSDE1-202ENST00000339438 E9PCH4 1651 aa8.66□□□□□ -1.02
CSDE1-202ENST00000339438 SYCP2Q9BX26 1530 aa8.65□□□□□ -1.02
CSDE1-202ENST00000339438 NRXN3Q9Y4C0 1643 aa8.65□□□□□ -1.02
CSDE1-202ENST00000339438 CLTCQ00610 1675 aaKnown RBP8.65□□□□□ -1.02
CSDE1-202ENST00000339438 SPATA31D1Q6ZQQ2 1576 aa8.64□□□□□ -1.03
CSDE1-202ENST00000339438 ATP7AQ04656 1500 aa8.64□□□□□ -1.03
CSDE1-202ENST00000339438 RIMS1Q86UR5 1692 aaKnown RBP8.63□□□□□ -1.03
CSDE1-202ENST00000339438 SYNMO15061 1565 aa8.63□□□□□ -1.03
CSDE1-202ENST00000339438 LAMC1P11047 1609 aa8.62□□□□□ -1.03
CSDE1-202ENST00000339438 CEP170BQ9Y4F5 1589 aaPredicted RBP8.61□□□□□ -1.03
CSDE1-202ENST00000339438 RTEL1-TNFRSF6BF6WH68 1400 aa8.61□□□□□ -1.03
CSDE1-202ENST00000339438 EFCAB6Q5THR3 1501 aa8.6□□□□□ -1.03
CSDE1-202ENST00000339438 FANCAO15360 1455 aa8.6□□□□□ -1.03
CSDE1-202ENST00000339438 UGGT1Q9NYU2 1555 aa8.6□□□□□ -1.03
CSDE1-202ENST00000339438 NCOA2Q15596 1464 aa8.6□□□□□ -1.03
CSDE1-202ENST00000339438 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP8.6□□□□□ -1.03
CSDE1-202ENST00000339438 TET3O43151 1660 aa8.59□□□□□ -1.03
CSDE1-202ENST00000339438 PTPRKQ15262 1439 aa8.59□□□□□ -1.03
CSDE1-202ENST00000339438 LMTK3Q96Q04 1460 aa8.59□□□□□ -1.03
CSDE1-202ENST00000339438 AKNAQ7Z591 1439 aa8.58□□□□□ -1.04
CSDE1-202ENST00000339438 RRBP1Q9P2E9 1410 aaKnown RBP8.58□□□□□ -1.04
CSDE1-202ENST00000339438 TRAPPC8Q9Y2L5 1435 aa8.58□□□□□ -1.04
CSDE1-202ENST00000339438 CENPBP07199 599 aaPredicted RBP8.57□□□□□ -1.04
CSDE1-202ENST00000339438 CD109Q6YHK3 1445 aa8.57□□□□□ -1.04
CSDE1-202ENST00000339438 SPHKAPQ2M3C7 1700 aa8.57□□□□□ -1.04
CSDE1-202ENST00000339438 MIA2Q96PC5 1412 aa8.57□□□□□ -1.04
CSDE1-202ENST00000339438 TMEM131LA2VDJ0 1609 aa8.56□□□□□ -1.04
CSDE1-202ENST00000339438 YEATS2Q9ULM3 1422 aa8.56□□□□□ -1.04
CSDE1-202ENST00000339438 ADGRL1O94910 1474 aa8.56□□□□□ -1.04
CSDE1-202ENST00000339438 PPLO60437 1756 aa8.55□□□□□ -1.04
CSDE1-202ENST00000339438 PRKCSHP14314 528 aaPredicted RBP8.55□□□□□ -1.04
CSDE1-202ENST00000339438 NWD1Q149M9 1564 aa8.54□□□□□ -1.04
CSDE1-202ENST00000339438 DIEXFQ68CQ4 756 aaKnown RBP8.54□□□□□ -1.04
CSDE1-202ENST00000339438 TRIM41Q8WV44 630 aa8.54□□□□□ -1.04
CSDE1-202ENST00000339438 CYB5RLQ6IPT4 315 aa8.54□□□□□ -1.04
CSDE1-202ENST00000339438 EHMT2Q96KQ7 1210 aa8.54□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms