RNA–Protein interactions for RNA: ENST00000339438.10

CSDE1-202, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 4,006 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-202ENST00000339438 NISCHQ9Y2I1 1504 aa13.9□□□□□ -0.18
CSDE1-202ENST00000339438 CCDC180Q9P1Z9 1646 aa12.81□□□□□ -0.36
CSDE1-202ENST00000339438 UNC13AQ9UPW8 1703 aa12.07□□□□□ -0.48
CSDE1-202ENST00000339438 MYO15BQ96JP2 1530 aa11.99□□□□□ -0.49
CSDE1-202ENST00000339438 DCAF1Q9Y4B6 1507 aa11.89□□□□□ -0.51
CSDE1-202ENST00000339438 ZCCHC6Q5VYS8 1495 aaKnown RBP11.74□□□□□ -0.53
CSDE1-202ENST00000339438 BICRAQ9NZM4 1560 aa11.7□□□□□ -0.54
CSDE1-202ENST00000339438 NACADO15069 1562 aa11.65□□□□□ -0.54
CSDE1-202ENST00000339438 RB1CC1Q8TDY2 1594 aa11.5□□□□□ -0.57
CSDE1-202ENST00000339438 ABCC9O60706 1549 aa11.47□□□□□ -0.57
CSDE1-202ENST00000339438 SHROOM4Q9ULL8 1493 aa11.44□□□□□ -0.58
CSDE1-202ENST00000339438 PEG3Q9GZU2 1588 aa11.17□□□□□ -0.62
CSDE1-202ENST00000339438 SCRIBQ14160 1630 aa11.02□□□□□ -0.64
CSDE1-202ENST00000339438 EIF4G1Q04637 1599 aaKnown RBP10.99□□□□□ -0.65
CSDE1-202ENST00000339438 CC2D2AQ9P2K1 1620 aa10.93□□□□□ -0.66
CSDE1-202ENST00000339438 SMARCA4P51532 1647 aa10.9□□□□□ -0.67
CSDE1-202ENST00000339438 PRDM2Q13029 1718 aa10.89□□□□□ -0.67
CSDE1-202ENST00000339438 HMGXB3Q12766 1538 aa10.83□□□□□ -0.68
CSDE1-202ENST00000339438 SMARCA2P51531 1590 aa10.77□□□□□ -0.69
CSDE1-202ENST00000339438 DNAJC5BQ9UF47 199 aa10.75□□□□□ -0.69
CSDE1-202ENST00000339438 NCAPD3P42695 1498 aa10.69□□□□□ -0.7
CSDE1-202ENST00000339438 CECR2Q9BXF3 1484 aa10.68□□□□□ -0.7
CSDE1-202ENST00000339438 MROH2BQ7Z745 1585 aa10.67□□□□□ -0.7
CSDE1-202ENST00000339438 BAZ1AQ9NRL2 1556 aaPredicted RBP10.67□□□□□ -0.7
CSDE1-202ENST00000339438 THOC2Q8NI27 1593 aaKnown RBP10.64□□□□□ -0.71
CSDE1-202ENST00000339438 WIZO95785 1651 aa10.64□□□□□ -0.71
CSDE1-202ENST00000339438 ATAD2BQ9ULI0 1458 aa10.61□□□□□ -0.71
CSDE1-202ENST00000339438 KIF21AQ7Z4S6 1674 aa10.55□□□□□ -0.72
CSDE1-202ENST00000339438 WDR97A6NE52 1622 aa10.51□□□□□ -0.73
CSDE1-202ENST00000339438 TOP2AP11388 1531 aaKnown RBP10.51□□□□□ -0.73
CSDE1-202ENST00000339438 LAMC3Q9Y6N6 1575 aa10.46□□□□□ -0.74
CSDE1-202ENST00000339438 RSF1Q96T23 1441 aaPredicted RBP10.42□□□□□ -0.74
CSDE1-202ENST00000339438 WDR62O43379 1518 aa10.38□□□□□ -0.75
CSDE1-202ENST00000339438 PABPN1Q86U42 306 aaKnown RBP eCLIP10.35□□□□□ -0.75
CSDE1-202ENST00000339438 TARBP1Q13395 1621 aaKnown RBP10.31□□□□□ -0.76
CSDE1-202ENST00000339438 CFTRP13569 1480 aa10.31□□□□□ -0.76
CSDE1-202ENST00000339438 BIVM-ERCC5R4GMW8 1640 aa10.28□□□□□ -0.76
CSDE1-202ENST00000339438 NESP48681 1621 aa10.22□□□□□ -0.77
CSDE1-202ENST00000339438 BAZ1BQ9UIG0 1483 aaKnown RBP10.21□□□□□ -0.77
CSDE1-202ENST00000339438 CCDC88BA6NC98 1476 aa10.19□□□□□ -0.78
CSDE1-202ENST00000339438 CUX2O14529 1486 aa10.18□□□□□ -0.78
CSDE1-202ENST00000339438 URB2Q14146 1524 aaKnown RBP10.16□□□□□ -0.78
CSDE1-202ENST00000339438 ABCA5Q8WWZ7 1642 aa10.15□□□□□ -0.78
CSDE1-202ENST00000339438 PBRM1Q86U86 1689 aa10.09□□□□□ -0.79
CSDE1-202ENST00000339438 DNMBPQ6XZF7 1577 aa10.08□□□□□ -0.8
CSDE1-202ENST00000339438 TOP2BQ02880 1626 aa10.06□□□□□ -0.8
CSDE1-202ENST00000339438 CUX1P39880 1505 aa10.05□□□□□ -0.8
CSDE1-202ENST00000339438 SHROOM2Q13796 1616 aa10.03□□□□□ -0.8
CSDE1-202ENST00000339438 CADPSQ9ULU8 1353 aa10.03□□□□□ -0.8
CSDE1-202ENST00000339438 SYNJ1O43426 1573 aa10.02□□□□□ -0.81
CSDE1-202ENST00000339438 EIF4G3O43432 1585 aaKnown RBP10.02□□□□□ -0.81
CSDE1-202ENST00000339438 MRC2Q9UBG0 1479 aa10.01□□□□□ -0.81
CSDE1-202ENST00000339438 CHD1O14646 1710 aa9.98□□□□□ -0.81
CSDE1-202ENST00000339438 CLASP1Q7Z460 1538 aa9.98□□□□□ -0.81
CSDE1-202ENST00000339438 TOPBP1Q92547 1522 aa9.97□□□□□ -0.81
CSDE1-202ENST00000339438 FANCD2Q9BXW9 1451 aa9.95□□□□□ -0.82
CSDE1-202ENST00000339438 CEP164Q9UPV0 1460 aa9.87□□□□□ -0.83
CSDE1-202ENST00000339438 ABCA10Q8WWZ4 1543 aa9.87□□□□□ -0.83
CSDE1-202ENST00000339438 POLA1P09884 1462 aaPredicted RBP9.86□□□□□ -0.83
CSDE1-202ENST00000339438 ADAMTS12P58397 1594 aa9.85□□□□□ -0.83
CSDE1-202ENST00000339438 ABCC8Q09428 1581 aa9.83□□□□□ -0.84
CSDE1-202ENST00000339438 PDS5BQ9NTI5 1447 aa9.82□□□□□ -0.84
CSDE1-202ENST00000339438 ZNF608Q9ULD9 1512 aaPredicted RBP9.8□□□□□ -0.84
CSDE1-202ENST00000339438 RUSC2Q8N2Y8 1516 aa9.79□□□□□ -0.84
CSDE1-202ENST00000339438 IFT140Q96RY7 1462 aa9.78□□□□□ -0.84
CSDE1-202ENST00000339438 CEP170Q5SW79 1584 aa9.78□□□□□ -0.84
CSDE1-202ENST00000339438 DCAF8L2P0C7V8 631 aa9.78□□□□□ -0.84
CSDE1-202ENST00000339438 ERICH3Q5RHP9 1530 aa9.76□□□□□ -0.85
CSDE1-202ENST00000339438 LRRIQ1Q96JM4 1722 aa9.74□□□□□ -0.85
CSDE1-202ENST00000339438 CUL7Q14999 1698 aa9.74□□□□□ -0.85
CSDE1-202ENST00000339438 FGD5Q6ZNL6 1462 aa9.73□□□□□ -0.85
CSDE1-202ENST00000339438 RIMBP3CA6NJZ7 1639 aa9.73□□□□□ -0.85
CSDE1-202ENST00000339438 RIMBP3BA6NNM3 1639 aa9.73□□□□□ -0.85
CSDE1-202ENST00000339438 RIMBP3Q9UFD9 1639 aa9.73□□□□□ -0.85
CSDE1-202ENST00000339438 CTTNBP2Q8WZ74 1663 aa9.72□□□□□ -0.85
CSDE1-202ENST00000339438 KIF13AQ9H1H9 1805 aa9.69□□□□□ -0.86
CSDE1-202ENST00000339438 PPRC1Q5VV67 1664 aaKnown RBP9.68□□□□□ -0.86
CSDE1-202ENST00000339438 NUP160Q12769 1436 aa9.67□□□□□ -0.86
CSDE1-202ENST00000339438 MAGI1Q96QZ7 1491 aaPredicted RBP9.65□□□□□ -0.86
CSDE1-202ENST00000339438 SAMD9Q5K651 1589 aa9.65□□□□□ -0.87
CSDE1-202ENST00000339438 RAD54L2Q9Y4B4 1467 aa9.63□□□□□ -0.87
CSDE1-202ENST00000339438 ERCC6L2Q5T890 1561 aa9.62□□□□□ -0.87
CSDE1-202ENST00000339438 HRCP23327 699 aa9.62□□□□□ -0.87
CSDE1-202ENST00000339438 DNAJC5Q9H3Z4 198 aa9.59□□□□□ -0.87
CSDE1-202ENST00000339438 ERCC6Q03468 1493 aa9.58□□□□□ -0.88
CSDE1-202ENST00000339438 KIF21BO75037 1637 aa9.56□□□□□ -0.88
CSDE1-202ENST00000339438 SYNJ2O15056 1496 aa9.56□□□□□ -0.88
CSDE1-202ENST00000339438 ADCY10Q96PN6 1610 aa9.55□□□□□ -0.88
CSDE1-202ENST00000339438 PRXQ9BXM0 1461 aa9.53□□□□□ -0.88
CSDE1-202ENST00000339438 SNAPC4Q5SXM2 1469 aa9.53□□□□□ -0.88
CSDE1-202ENST00000339438 GRIN2AQ12879 1464 aa9.52□□□□□ -0.88
CSDE1-202ENST00000339438 PELP1Q8IZL8 1130 aaKnown RBP9.52□□□□□ -0.89
CSDE1-202ENST00000339438 GRIN2BQ13224 1484 aa9.52□□□□□ -0.89
CSDE1-202ENST00000339438 UGGT2Q9NYU1 1516 aa9.52□□□□□ -0.89
CSDE1-202ENST00000339438 ARHGEF11O15085 1522 aa9.51□□□□□ -0.89
CSDE1-202ENST00000339438 KDM5BQ9UGL1 1544 aa9.51□□□□□ -0.89
CSDE1-202ENST00000339438 WRNQ14191 1432 aaPredicted RBP eCLIP9.5□□□□□ -0.892e-7■□□□□ 9.9
CSDE1-202ENST00000339438 ARAP1Q96P48 1450 aa9.5□□□□□ -0.89
CSDE1-202ENST00000339438 AQRO60306 1485 aaKnown RBP eCLIP9.49□□□□□ -0.892e-7■■■■□ 24.7
CSDE1-202ENST00000339438 DISP1Q96F81 1524 aa9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms