RNA–Protein interactions for RNA: ENST00000319854.7

SHROOM1-201, Transcript of shroom family member 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHROOM1, Length 3,190 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-201ENST00000319854 ARHGEF11O15085 1522 aa21.79■■□□□ 1.08
SHROOM1-201ENST00000319854 SLC4A1APQ9BWU0 796 aaKnown RBP21.78■■□□□ 1.08
SHROOM1-201ENST00000319854 MSH5O43196 834 aa21.77■■□□□ 1.08
SHROOM1-201ENST00000319854 ANP32CO43423 234 aa21.74■■□□□ 1.07
SHROOM1-201ENST00000319854 L3MBTL2Q969R5 705 aa21.74■■□□□ 1.07
SHROOM1-201ENST00000319854 SYNJ2O15056 1496 aa21.74■■□□□ 1.07
SHROOM1-201ENST00000319854 CEP170Q5SW79 1584 aa21.74■■□□□ 1.07
SHROOM1-201ENST00000319854 CNGB1Q14028 1251 aaPredicted RBP21.73■■□□□ 1.07
SHROOM1-201ENST00000319854 ZNF326Q5BKZ1 582 aaKnown RBP21.73■■□□□ 1.07
SHROOM1-201ENST00000319854 MIA2Q96PC5 1412 aa21.72■■□□□ 1.07
SHROOM1-201ENST00000319854 TCOF1Q13428 1488 aaKnown RBP21.72■■□□□ 1.07
SHROOM1-201ENST00000319854 PLEKHD1A6NEE1 506 aa21.71■■□□□ 1.07
SHROOM1-201ENST00000319854 MAGI1Q96QZ7 1491 aaPredicted RBP21.71■■□□□ 1.07
SHROOM1-201ENST00000319854 DAPK1P53355 1430 aa21.71■■□□□ 1.07
SHROOM1-201ENST00000319854 RAPGEF6Q8TEU7 1601 aa21.7■■□□□ 1.06
SHROOM1-201ENST00000319854 ABCC5O15440 1437 aa21.7■■□□□ 1.06
SHROOM1-201ENST00000319854 HSPA5P11021 654 aaKnown RBP21.69■■□□□ 1.06
SHROOM1-201ENST00000319854 CARMIL2Q6F5E8 1435 aa21.69■■□□□ 1.06
SHROOM1-201ENST00000319854 DENND4BO75064 1496 aaPredicted RBP21.67■■□□□ 1.06
SHROOM1-201ENST00000319854 TROQ12816 1431 aaPredicted RBP21.64■■□□□ 1.06
SHROOM1-201ENST00000319854 NEFLP07196 543 aa21.64■■□□□ 1.05
SHROOM1-201ENST00000319854 POLR3GLQ9BT43 218 aa21.64■■□□□ 1.05
SHROOM1-201ENST00000319854 PRKCSHP14314 528 aaPredicted RBP21.64■■□□□ 1.05
SHROOM1-201ENST00000319854 HNRNPMP52272 730 aaKnown RBP eCLIP21.61■■□□□ 1.05
SHROOM1-201ENST00000319854 EIF4G2P78344 907 aaKnown RBP eCLIP21.6■■□□□ 1.05
SHROOM1-201ENST00000319854 KIF14Q15058 1648 aa21.6■■□□□ 1.05
SHROOM1-201ENST00000319854 NBPF8Q3BBV2 869 aa21.59■■□□□ 1.05
SHROOM1-201ENST00000319854 CAMSAP2Q08AD1 1489 aa21.58■■□□□ 1.05
SHROOM1-201ENST00000319854 GPATCH8Q9UKJ3 1502 aaKnown RBP21.57■■□□□ 1.04
SHROOM1-201ENST00000319854 WASHC2AQ641Q2 1341 aa21.57■■□□□ 1.04
SHROOM1-201ENST00000319854 PKD2Q13563 968 aa21.57■■□□□ 1.04
SHROOM1-201ENST00000319854 NUP160Q12769 1436 aa21.57■■□□□ 1.04
SHROOM1-201ENST00000319854 GCC2Q8IWJ2 1684 aa21.56■■□□□ 1.04
SHROOM1-201ENST00000319854 C11orf95C9JLR9 678 aaPredicted RBP21.55■■□□□ 1.04
SHROOM1-201ENST00000319854 KDM5BQ9UGL1 1544 aa21.54■■□□□ 1.04
SHROOM1-201ENST00000319854 PTPRGP23470 1445 aa21.53■■□□□ 1.04
SHROOM1-201ENST00000319854 TSPY4P0CV99 314 aa21.53■■□□□ 1.04
SHROOM1-201ENST00000319854 TSPY10P0CW01 314 aa21.53■■□□□ 1.04
SHROOM1-201ENST00000319854 ANKRD30BQ9BXX2 1392 aa21.53■■□□□ 1.04
SHROOM1-201ENST00000319854 AKNAQ7Z591 1439 aa21.52■■□□□ 1.04
SHROOM1-201ENST00000319854 ROCK1Q13464 1354 aa21.52■■□□□ 1.03
SHROOM1-201ENST00000319854 ATP10BO94823 1461 aa21.51■■□□□ 1.03
SHROOM1-201ENST00000319854 DNMT1P26358 1616 aaKnown RBP21.51■■□□□ 1.03
SHROOM1-201ENST00000319854 NCOA1Q15788 1441 aa21.5■■□□□ 1.03
SHROOM1-201ENST00000319854 KDM2AQ9Y2K7 1162 aa21.5■■□□□ 1.03
SHROOM1-201ENST00000319854 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.47■■□□□ 1.033e-8■■■■□ 21
SHROOM1-201ENST00000319854 ANKRD30AQ9BXX3 1397 aa21.47■■□□□ 1.03
SHROOM1-201ENST00000319854 NUP155O75694 1391 aa21.47■■□□□ 1.03
SHROOM1-201ENST00000319854 IRX6P78412 446 aaPredicted RBP21.46■■□□□ 1.03
SHROOM1-201ENST00000319854 HNRNPUQ00839 825 aaKnown RBP eCLIP21.46■■□□□ 1.03
SHROOM1-201ENST00000319854 CCER2I3L3R5 266 aa21.45■■□□□ 1.02
SHROOM1-201ENST00000319854 FANCIQ9NVI1 1328 aa21.43■■□□□ 1.02
SHROOM1-201ENST00000319854 ANKRD50Q9ULJ7 1429 aa21.43■■□□□ 1.02
SHROOM1-201ENST00000319854 CCDC184Q52MB2 194 aa21.43■■□□□ 1.02
SHROOM1-201ENST00000319854 SENP3-EIF4A1A0A087X0R7 540 aa21.42■■□□□ 1.02
SHROOM1-201ENST00000319854 RPRD2Q5VT52 1461 aaKnown RBP21.41■■□□□ 1.02
SHROOM1-201ENST00000319854 PZPP20742 1482 aa21.4■■□□□ 1.02
SHROOM1-201ENST00000319854 FAM9BQ8IZU0 186 aa21.4■■□□□ 1.02
SHROOM1-201ENST00000319854 C9orf84Q5VXU9 1444 aa21.39■■□□□ 1.01
SHROOM1-201ENST00000319854 RGL3Q3MIN7 710 aa21.37■■□□□ 1.01
SHROOM1-201ENST00000319854 ABCA8O94911 1581 aa21.36■■□□□ 1.01
SHROOM1-201ENST00000319854 ERICH6Q7L0X2 663 aa21.36■■□□□ 1.01
SHROOM1-201ENST00000319854 KIF15Q9NS87 1388 aa21.36■■□□□ 1.01
SHROOM1-201ENST00000319854 ITSN2Q9NZM3 1697 aa21.35■■□□□ 1.01
SHROOM1-201ENST00000319854 KIF7Q2M1P5 1343 aa21.34■■□□□ 1.01
SHROOM1-201ENST00000319854 CCDC7Q96M83 1385 aa21.34■■□□□ 1.01
SHROOM1-201ENST00000319854 DCAF11Q8TEB1 546 aa21.34■■□□□ 1.01
SHROOM1-201ENST00000319854 TEX14Q8IWB6 1497 aa21.33■■□□□ 1.01
SHROOM1-201ENST00000319854 KIAA1107Q9UPP5 1409 aa21.33■■□□□ 1
SHROOM1-201ENST00000319854 ABCC10Q5T3U5 1492 aa21.32■■□□□ 1
SHROOM1-201ENST00000319854 ERCC6L2Q5T890 1561 aa21.31■■□□□ 1
SHROOM1-201ENST00000319854 MRS2Q9HD23 443 aa21.31■■□□□ 1
SHROOM1-201ENST00000319854 CDC42BPAQ5VT25 1732 aa21.3■■□□□ 1
SHROOM1-201ENST00000319854 CARD11Q9BXL7 1154 aa21.28■■□□□ 1
SHROOM1-201ENST00000319854 CHD1O14646 1710 aa21.28■■□□□ 1
SHROOM1-201ENST00000319854 PRKRIP1Q9H875 184 aaPredicted RBP21.27■■□□□ 1
SHROOM1-201ENST00000319854 DEKP35659 375 aaKnown RBP21.26■□□□□ 0.99
SHROOM1-201ENST00000319854 CNTLNQ9NXG0 1405 aa21.26■□□□□ 0.99
SHROOM1-201ENST00000319854 USP47Q96K76 1375 aa21.25■□□□□ 0.99
SHROOM1-201ENST00000319854 ADCY10Q96PN6 1610 aa21.25■□□□□ 0.99
SHROOM1-201ENST00000319854 ADGRL2O95490 1459 aa21.24■□□□□ 0.99
SHROOM1-201ENST00000319854 MYT1LQ9UL68 1186 aa21.24■□□□□ 0.99
SHROOM1-201ENST00000319854 ARHGAP5Q13017 1502 aa21.23■□□□□ 0.99
SHROOM1-201ENST00000319854 ADGBQ8N7X0 1667 aa21.22■□□□□ 0.99
SHROOM1-201ENST00000319854 ST20-MTHFSA0A0A6YYL1 179 aa21.2■□□□□ 0.98
SHROOM1-201ENST00000319854 MBD5Q9P267 1494 aa21.2■□□□□ 0.98
SHROOM1-201ENST00000319854 CROCC2H7BZ55 1655 aa21.18■□□□□ 0.98
SHROOM1-201ENST00000319854 SYCP2Q9BX26 1530 aa21.18■□□□□ 0.98
SHROOM1-201ENST00000319854 CCDC141Q6ZP82 1450 aa21.17■□□□□ 0.98
SHROOM1-201ENST00000319854 SPATA31E1Q6ZUB1 1445 aa21.17■□□□□ 0.98
SHROOM1-201ENST00000319854 SAMD9LQ8IVG5 1584 aa21.16■□□□□ 0.98
SHROOM1-201ENST00000319854 TTC37Q6PGP7 1564 aa21.14■□□□□ 0.98
SHROOM1-201ENST00000319854 AFAP1Q8N556 730 aa21.14■□□□□ 0.98
SHROOM1-201ENST00000319854 NBPF1Q3BBV0 1214 aa21.13■□□□□ 0.97
SHROOM1-201ENST00000319854 B4GALNT3Q6L9W6 998 aa21.12■□□□□ 0.97
SHROOM1-201ENST00000319854 PPP4R2Q9NY27 417 aa21.12■□□□□ 0.97
SHROOM1-201ENST00000319854 CDC42BPBQ9Y5S2 1711 aa21.12■□□□□ 0.97
SHROOM1-201ENST00000319854 SHANK2Q9UPX8 1470 aa21.11■□□□□ 0.97
SHROOM1-201ENST00000319854 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.1■□□□□ 0.97
SHROOM1-201ENST00000319854 NBR1Q14596 966 aa21.1■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms