RNA–Protein interactions for RNA: ENST00000319854.7

SHROOM1-201, Transcript of shroom family member 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHROOM1, Length 3,190 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-201ENST00000319854 NISCHQ9Y2I1 1504 aa32.21■■■□□ 2.75
SHROOM1-201ENST00000319854 SHROOM4Q9ULL8 1493 aa27.89■■■□□ 2.06
SHROOM1-201ENST00000319854 DCAF8L2P0C7V8 631 aa27.58■■■□□ 2.01
SHROOM1-201ENST00000319854 SUPT5HO00267 1087 aaKnown RBP27.25■■□□□ 1.95
SHROOM1-201ENST00000319854 CCDC180Q9P1Z9 1646 aa27.23■■□□□ 1.95
SHROOM1-201ENST00000319854 ZCCHC6Q5VYS8 1495 aaKnown RBP27.12■■□□□ 1.93
SHROOM1-201ENST00000319854 DCAF1Q9Y4B6 1507 aa26.14■■□□□ 1.77
SHROOM1-201ENST00000319854 ABCC9O60706 1549 aa26.07■■□□□ 1.76
SHROOM1-201ENST00000319854 CHIC1Q5VXU3 224 aa26.06■■□□□ 1.76
SHROOM1-201ENST00000319854 SCRIBQ14160 1630 aa25.93■■□□□ 1.74
SHROOM1-201ENST00000319854 HRCP23327 699 aa25.85■■□□□ 1.73
SHROOM1-201ENST00000319854 MYO15BQ96JP2 1530 aa25.84■■□□□ 1.73
SHROOM1-201ENST00000319854 LOC105371045A0A1W2PR82 267 aa25.53■■□□□ 1.68
SHROOM1-201ENST00000319854 RSF1Q96T23 1441 aaPredicted RBP25.5■■□□□ 1.67
SHROOM1-201ENST00000319854 PPARGC1BQ86YN6 1023 aaKnown RBP25.48■■□□□ 1.67
SHROOM1-201ENST00000319854 PCGF6Q9BYE7 350 aa25.42■■□□□ 1.66
SHROOM1-201ENST00000319854 NACADO15069 1562 aa25.37■■□□□ 1.65
SHROOM1-201ENST00000319854 CECR2Q9BXF3 1484 aa25.35■■□□□ 1.65
SHROOM1-201ENST00000319854 EHMT2Q96KQ7 1210 aa25.33■■□□□ 1.65
SHROOM1-201ENST00000319854 FAM9AQ8IZU1 332 aaPredicted RBP25.3■■□□□ 1.64
SHROOM1-201ENST00000319854 TRIM41Q8WV44 630 aa25.23■■□□□ 1.63
SHROOM1-201ENST00000319854 RB1CC1Q8TDY2 1594 aa25.21■■□□□ 1.63
SHROOM1-201ENST00000319854 MROH2BQ7Z745 1585 aa25.15■■□□□ 1.62
SHROOM1-201ENST00000319854 PABPN1Q86U42 306 aaKnown RBP eCLIP25.08■■□□□ 1.61
SHROOM1-201ENST00000319854 WIZO95785 1651 aa24.99■■□□□ 1.59
SHROOM1-201ENST00000319854 BAZ1AQ9NRL2 1556 aaPredicted RBP24.73■■□□□ 1.55
SHROOM1-201ENST00000319854 UNC13AQ9UPW8 1703 aa24.66■■□□□ 1.54
SHROOM1-201ENST00000319854 PELP1Q8IZL8 1130 aaKnown RBP24.61■■□□□ 1.53
SHROOM1-201ENST00000319854 SMARCA4P51532 1647 aa24.56■■□□□ 1.52
SHROOM1-201ENST00000319854 TRIM26Q12899 539 aaPredicted RBP24.54■■□□□ 1.52
SHROOM1-201ENST00000319854 CCDC88BA6NC98 1476 aa24.5■■□□□ 1.51
SHROOM1-201ENST00000319854 SCAF1Q9H7N4 1312 aaKnown RBP24.48■■□□□ 1.51
SHROOM1-201ENST00000319854 ABCC8Q09428 1581 aa24.46■■□□□ 1.51
SHROOM1-201ENST00000319854 TOP2AP11388 1531 aaKnown RBP24.44■■□□□ 1.5
SHROOM1-201ENST00000319854 BICRAQ9NZM4 1560 aa24.43■■□□□ 1.5
SHROOM1-201ENST00000319854 TTBK1Q5TCY1 1321 aaPredicted RBP24.38■■□□□ 1.49
SHROOM1-201ENST00000319854 SMARCA2P51531 1590 aa24.35■■□□□ 1.49
SHROOM1-201ENST00000319854 EIF4G1Q04637 1599 aaKnown RBP24.24■■□□□ 1.47
SHROOM1-201ENST00000319854 SOGA1O94964 1423 aa24.21■■□□□ 1.47
SHROOM1-201ENST00000319854 ZEB1P37275 1124 aaPredicted RBP24.19■■□□□ 1.46
SHROOM1-201ENST00000319854 UBTFP17480 764 aaKnown RBP24.17■■□□□ 1.46
SHROOM1-201ENST00000319854 RUSC2Q8N2Y8 1516 aa24.12■■□□□ 1.45
SHROOM1-201ENST00000319854 ATAD2BQ9ULI0 1458 aa24.08■■□□□ 1.45
SHROOM1-201ENST00000319854 RANGAP1P46060 587 aaPredicted RBP24.08■■□□□ 1.45
SHROOM1-201ENST00000319854 BAZ1BQ9UIG0 1483 aaKnown RBP24.07■■□□□ 1.44
SHROOM1-201ENST00000319854 CSRNP3Q8WYN3 585 aa24.06■■□□□ 1.44
SHROOM1-201ENST00000319854 WRNQ14191 1432 aaPredicted RBP eCLIP24.01■■□□□ 1.43
SHROOM1-201ENST00000319854 CEP162Q5TB80 1403 aa23.9■■□□□ 1.42
SHROOM1-201ENST00000319854 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.9■■□□□ 1.42
SHROOM1-201ENST00000319854 PEG3Q9GZU2 1588 aa23.89■■□□□ 1.42
SHROOM1-201ENST00000319854 NEUROD1Q13562 356 aa23.85■■□□□ 1.41
SHROOM1-201ENST00000319854 ACIN1Q9UKV3 1341 aaKnown RBP23.83■■□□□ 1.41
SHROOM1-201ENST00000319854 SYNJ1O43426 1573 aa23.83■■□□□ 1.4
SHROOM1-201ENST00000319854 TNIKQ9UKE5 1360 aa23.77■■□□□ 1.4
SHROOM1-201ENST00000319854 CCER1Q8TC90 406 aaPredicted RBP23.76■■□□□ 1.39
SHROOM1-201ENST00000319854 EEA1Q15075 1411 aa23.72■■□□□ 1.39
SHROOM1-201ENST00000319854 GOLGA3Q08378 1498 aa23.7■■□□□ 1.38
SHROOM1-201ENST00000319854 GTF3C3Q9Y5Q9 886 aa23.67■■□□□ 1.38
SHROOM1-201ENST00000319854 RAPGEF2Q9Y4G8 1499 aa23.58■■□□□ 1.37
SHROOM1-201ENST00000319854 CEP164Q9UPV0 1460 aa23.57■■□□□ 1.36
SHROOM1-201ENST00000319854 NCAPD3P42695 1498 aa23.56■■□□□ 1.36
SHROOM1-201ENST00000319854 CLIP1P30622 1438 aa23.54■■□□□ 1.36
SHROOM1-201ENST00000319854 HNRNPUL2Q1KMD3 747 aaKnown RBP23.54■■□□□ 1.36
SHROOM1-201ENST00000319854 MYT1Q01538 1121 aa23.54■■□□□ 1.36
SHROOM1-201ENST00000319854 APLP2Q06481 763 aa23.52■■□□□ 1.36
SHROOM1-201ENST00000319854 DIEXFQ68CQ4 756 aaKnown RBP23.47■■□□□ 1.35
SHROOM1-201ENST00000319854 HMGXB3Q12766 1538 aa23.43■■□□□ 1.34
SHROOM1-201ENST00000319854 TOP2BQ02880 1626 aa23.43■■□□□ 1.34
SHROOM1-201ENST00000319854 CENPBP07199 599 aaPredicted RBP23.42■■□□□ 1.34
SHROOM1-201ENST00000319854 CUX1P39880 1505 aa23.39■■□□□ 1.33
SHROOM1-201ENST00000319854 KIF21BO75037 1637 aa23.37■■□□□ 1.33
SHROOM1-201ENST00000319854 CFTRP13569 1480 aa23.34■■□□□ 1.33
SHROOM1-201ENST00000319854 VPS8Q8N3P4 1428 aa23.29■■□□□ 1.32
SHROOM1-201ENST00000319854 KIF27Q86VH2 1401 aa23.28■■□□□ 1.32
SHROOM1-201ENST00000319854 BIVM-ERCC5R4GMW8 1640 aa23.25■■□□□ 1.31
SHROOM1-201ENST00000319854 CADPSQ9ULU8 1353 aa23.25■■□□□ 1.31
SHROOM1-201ENST00000319854 CC2D2AQ9P2K1 1620 aa23.23■■□□□ 1.31
SHROOM1-201ENST00000319854 CUX2O14529 1486 aa23.2■■□□□ 1.3
SHROOM1-201ENST00000319854 PRXQ9BXM0 1461 aa23.19■■□□□ 1.3
SHROOM1-201ENST00000319854 KANK4Q5T7N3 995 aaPredicted RBP23.19■■□□□ 1.3
SHROOM1-201ENST00000319854 P3H3Q8IVL6 736 aa23.16■■□□□ 1.3
SHROOM1-201ENST00000319854 DNAJC5BQ9UF47 199 aa23.16■■□□□ 1.3
SHROOM1-201ENST00000319854 ITGAEP38570 1179 aa23.15■■□□□ 1.3
SHROOM1-201ENST00000319854 ATP1B4Q9UN42 357 aaPredicted RBP23.15■■□□□ 1.3
SHROOM1-201ENST00000319854 YTHDC1Q96MU7 727 aaKnown RBP23.14■■□□□ 1.3
SHROOM1-201ENST00000319854 NESP48681 1621 aa23.11■■□□□ 1.29
SHROOM1-201ENST00000319854 ARAP1Q96P48 1450 aa23.09■■□□□ 1.29
SHROOM1-201ENST00000319854 FGD5Q6ZNL6 1462 aa23.08■■□□□ 1.29
SHROOM1-201ENST00000319854 IGF1RP08069 1367 aa23.07■■□□□ 1.28
SHROOM1-201ENST00000319854 FANCD2Q9BXW9 1451 aa23.04■■□□□ 1.28
SHROOM1-201ENST00000319854 ERICH3Q5RHP9 1530 aa23.04■■□□□ 1.28
SHROOM1-201ENST00000319854 CARMIL1Q5VZK9 1371 aa23.02■■□□□ 1.28
SHROOM1-201ENST00000319854 ZNF316A6NFI3 1004 aaPredicted RBP23.02■■□□□ 1.28
SHROOM1-201ENST00000319854 RAD54L2Q9Y4B4 1467 aa23■■□□□ 1.27
SHROOM1-201ENST00000319854 ARHGAP35Q9NRY4 1499 aa22.95■■□□□ 1.26
SHROOM1-201ENST00000319854 MIER1Q8N108 512 aa22.95■■□□□ 1.26
SHROOM1-201ENST00000319854 PRDM2Q13029 1718 aa22.85■■□□□ 1.25
SHROOM1-201ENST00000319854 TDRD9Q8NDG6 1382 aaKnown RBP22.84■■□□□ 1.25
SHROOM1-201ENST00000319854 POLA1P09884 1462 aaPredicted RBP22.82■■□□□ 1.24
SHROOM1-201ENST00000319854 TOPBP1Q92547 1522 aa22.81■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms