RNA–Protein interactions for RNA: ENST00000306177.9

USP42-201, Transcript of ubiquitin specific peptidase 42, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP42, Length 5,155 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-201ENST00000306177 LMOD2Q6P5Q4 547 aa20.62■□□□□ 0.89
USP42-201ENST00000306177 RGS3P49796 1198 aa20.6■□□□□ 0.89
USP42-201ENST00000306177 SRPK2P78362 688 aaKnown RBP20.59■□□□□ 0.89
USP42-201ENST00000306177 JPH4Q96JJ6 628 aa20.58■□□□□ 0.89
USP42-201ENST00000306177 TRHP20396 242 aaPredicted RBP20.57■□□□□ 0.88
USP42-201ENST00000306177 MORC1Q86VD1 984 aa20.57■□□□□ 0.88
USP42-201ENST00000306177 CCDC18Q5T9S5 1454 aa20.57■□□□□ 0.88
USP42-201ENST00000306177 SAFB2Q14151 953 aaKnown RBP eCLIP20.56■□□□□ 0.88
USP42-201ENST00000306177 TRIM44Q96DX7 344 aaPredicted RBP20.55■□□□□ 0.88
USP42-201ENST00000306177 HNRNPMP52272 730 aaKnown RBP eCLIP20.54■□□□□ 0.881e-6■■■■□ 21.8
USP42-201ENST00000306177 KTN1Q86UP2 1357 aaKnown RBP20.54■□□□□ 0.88
USP42-201ENST00000306177 B4GALNT3Q6L9W6 998 aa20.53■□□□□ 0.88
USP42-201ENST00000306177 GLIPR1L2Q4G1C9 344 aa20.53■□□□□ 0.88
USP42-201ENST00000306177 ROCK2O75116 1388 aaKnown RBP20.52■□□□□ 0.88
USP42-201ENST00000306177 KIF3BO15066 747 aa20.49■□□□□ 0.87
USP42-201ENST00000306177 RSPH4AQ5TD94 716 aa20.49■□□□□ 0.87
USP42-201ENST00000306177 STK26Q9P289 416 aa20.49■□□□□ 0.87
USP42-201ENST00000306177 L3MBTL2Q969R5 705 aa20.47■□□□□ 0.87
USP42-201ENST00000306177 CDK11BP21127 795 aaKnown RBP20.46■□□□□ 0.87
USP42-201ENST00000306177 OS9Q13438 667 aaPredicted RBP20.46■□□□□ 0.87
USP42-201ENST00000306177 HDGFL2Q7Z4V5 671 aaPredicted RBP20.46■□□□□ 0.87
USP42-201ENST00000306177 SPAG9O60271 1321 aaKnown RBP20.46■□□□□ 0.87
USP42-201ENST00000306177 ZRSR1Q15695 479 aaKnown RBP20.45■□□□□ 0.86
USP42-201ENST00000306177 RALBP1Q15311 655 aa20.45■□□□□ 0.86
USP42-201ENST00000306177 NOP58Q9Y2X3 529 aaKnown RBP20.44■□□□□ 0.86
USP42-201ENST00000306177 FGD5Q6ZNL6 1462 aa20.44■□□□□ 0.86
USP42-201ENST00000306177 SOX12O15370 315 aa20.43■□□□□ 0.86
USP42-201ENST00000306177 IGF1RP08069 1367 aa20.4■□□□□ 0.86
USP42-201ENST00000306177 EIF3AQ14152 1382 aaKnown RBP20.4■□□□□ 0.86
USP42-201ENST00000306177 HSP90AB1P08238 724 aaKnown RBP20.4■□□□□ 0.86
USP42-201ENST00000306177 PTMAP06454 111 aaKnown RBP20.39■□□□□ 0.85
USP42-201ENST00000306177 RTF1Q92541 710 aaKnown RBP20.38■□□□□ 0.85
USP42-201ENST00000306177 GAPVD1Q14C86 1478 aa20.37■□□□□ 0.85
USP42-201ENST00000306177 PTPRGP23470 1445 aa20.37■□□□□ 0.85
USP42-201ENST00000306177 NCAPD3P42695 1498 aa20.36■□□□□ 0.85
USP42-201ENST00000306177 ERICH6BQ5W0A0 696 aa20.36■□□□□ 0.85
USP42-201ENST00000306177 DHX57Q6P158 1386 aaKnown RBP20.36■□□□□ 0.85
USP42-201ENST00000306177 RAD54L2Q9Y4B4 1467 aa20.35■□□□□ 0.85
USP42-201ENST00000306177 IPO8O15397 1037 aaKnown RBP20.35■□□□□ 0.85
USP42-201ENST00000306177 KCNJ4P48050 445 aa20.35■□□□□ 0.85
USP42-201ENST00000306177 U2AF1L5P0DN76 240 aaPredicted RBP20.34■□□□□ 0.85
USP42-201ENST00000306177 U2AF1Q01081 240 aaKnown RBP eCLIP20.34■□□□□ 0.85
USP42-201ENST00000306177 TPRNQ4KMQ1 711 aa20.34■□□□□ 0.85
USP42-201ENST00000306177 WASHC2CQ9Y4E1 1318 aa20.34■□□□□ 0.85
USP42-201ENST00000306177 FGD1P98174 961 aa20.33■□□□□ 0.85
USP42-201ENST00000306177 RCAN3Q9UKA8 241 aa20.33■□□□□ 0.85
USP42-201ENST00000306177 CALD1Q05682 793 aaKnown RBP20.33■□□□□ 0.84
USP42-201ENST00000306177 NPHP1O15259 732 aa20.33■□□□□ 0.84
USP42-201ENST00000306177 HSCBQ8IWL3 235 aa20.32■□□□□ 0.84
USP42-201ENST00000306177 CFAP44Q96MT7 982 aa20.31■□□□□ 0.84
USP42-201ENST00000306177 MCCP23508 829 aa20.27■□□□□ 0.84
USP42-201ENST00000306177 CCDC144AA2RUR9 1427 aa20.26■□□□□ 0.83
USP42-201ENST00000306177 NUTM2DQ5VT03 806 aaPredicted RBP20.25■□□□□ 0.83
USP42-201ENST00000306177 TERF2IPQ9NYB0 399 aa20.25■□□□□ 0.83
USP42-201ENST00000306177 GOLGA2Q08379 1002 aa20.25■□□□□ 0.83
USP42-201ENST00000306177 NLRP13Q86W25 1043 aa20.24■□□□□ 0.83
USP42-201ENST00000306177 PAK3O75914 559 aaPredicted RBP20.24■□□□□ 0.83
USP42-201ENST00000306177 DNTTIP2Q5QJE6 756 aaKnown RBP20.24■□□□□ 0.83
USP42-201ENST00000306177 RWDD1Q9H446 243 aaPredicted RBP20.23■□□□□ 0.83
USP42-201ENST00000306177 NAP1L2Q9ULW6 460 aaPredicted RBP20.22■□□□□ 0.83
USP42-201ENST00000306177 ITPRIPQ8IWB1 547 aa20.21■□□□□ 0.83
USP42-201ENST00000306177 RBM19Q9Y4C8 960 aaKnown RBP20.21■□□□□ 0.83
USP42-201ENST00000306177 ST20-MTHFSA0A0A6YYL1 179 aa20.2■□□□□ 0.82
USP42-201ENST00000306177 PLCB2Q00722 1185 aa20.2■□□□□ 0.82
USP42-201ENST00000306177 TAOK2Q9UL54 1235 aa20.2■□□□□ 0.82
USP42-201ENST00000306177 AQRO60306 1485 aaKnown RBP eCLIP20.18■□□□□ 0.823e-6■■■□□ 17.1
USP42-201ENST00000306177 TCERG1O14776 1098 aaKnown RBP20.18■□□□□ 0.82
USP42-201ENST00000306177 PDE3BQ13370 1112 aa20.18■□□□□ 0.82
USP42-201ENST00000306177 CHMP4AQ9BY43 222 aa20.18■□□□□ 0.82
USP42-201ENST00000306177 TRAK1Q9UPV9 953 aa20.18■□□□□ 0.82
USP42-201ENST00000306177 GOLGA6L4A6NEF3 574 aa20.17■□□□□ 0.82
USP42-201ENST00000306177 PHLDB1Q86UU1 1377 aa20.17■□□□□ 0.82
USP42-201ENST00000306177 KIF21BO75037 1637 aa20.17■□□□□ 0.82
USP42-201ENST00000306177 EID1Q9Y6B2 187 aa20.17■□□□□ 0.82
USP42-201ENST00000306177 MYOM3Q5VTT5 1437 aa20.16■□□□□ 0.82
USP42-201ENST00000306177 KIF15Q9NS87 1388 aa20.16■□□□□ 0.82
USP42-201ENST00000306177 APBB1O00213 710 aa20.16■□□□□ 0.82
USP42-201ENST00000306177 FGD6Q6ZV73 1430 aa20.16■□□□□ 0.82
USP42-201ENST00000306177 GOLGA6L6A8MZA4 724 aa20.15■□□□□ 0.82
USP42-201ENST00000306177 PMFBP1Q8TBY8 1022 aa20.15■□□□□ 0.82
USP42-201ENST00000306177 CSB-PGBD3P0DP91 1061 aa20.15■□□□□ 0.82
USP42-201ENST00000306177 OSCARQ8IYS5 282 aa20.15■□□□□ 0.82
USP42-201ENST00000306177 SMC4Q9NTJ3 1288 aa20.13■□□□□ 0.81
USP42-201ENST00000306177 UACAQ9BZF9 1416 aa20.13■□□□□ 0.81
USP42-201ENST00000306177 STK31Q9BXU1 1019 aa20.13■□□□□ 0.81
USP42-201ENST00000306177 CYB5RLQ6IPT4 315 aa20.12■□□□□ 0.81
USP42-201ENST00000306177 SPRYD3Q8NCJ5 442 aa20.12■□□□□ 0.81
USP42-201ENST00000306177 CFTRP13569 1480 aa20.12■□□□□ 0.81
USP42-201ENST00000306177 KIAA1211Q6ZU35 1233 aa20.12■□□□□ 0.81
USP42-201ENST00000306177 CCDC146Q8IYE0 955 aa20.12■□□□□ 0.81
USP42-201ENST00000306177 MYBBP1AQ9BQG0 1328 aaKnown RBP20.11■□□□□ 0.81
USP42-201ENST00000306177 CUX1P39880 1505 aa20.11■□□□□ 0.81
USP42-201ENST00000306177 ZNF644Q9H582 1327 aaPredicted RBP20.1■□□□□ 0.81
USP42-201ENST00000306177 LRRC9Q6ZRR7 1453 aa20.09■□□□□ 0.81
USP42-201ENST00000306177 USP47Q96K76 1375 aa20.09■□□□□ 0.81
USP42-201ENST00000306177 CENPJQ9HC77 1338 aaPredicted RBP20.09■□□□□ 0.81
USP42-201ENST00000306177 NRDCO43847 1150 aa20.09■□□□□ 0.81
USP42-201ENST00000306177 LMOD3Q0VAK6 560 aa20.09■□□□□ 0.81
USP42-201ENST00000306177 PANK3Q9H999 370 aa20.09■□□□□ 0.81
USP42-201ENST00000306177 L1TD1Q5T7N2 865 aaKnown RBP20.08■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms