RNA–Protein interactions for RNA: ENST00000306177.9

USP42-201, Transcript of ubiquitin specific peptidase 42, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP42, Length 5,155 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-201ENST00000306177 DCAF8L2P0C7V8 631 aa27.89■■■□□ 2.05
USP42-201ENST00000306177 NISCHQ9Y2I1 1504 aa27.58■■■□□ 2.01
USP42-201ENST00000306177 SUPT5HO00267 1087 aaKnown RBP26.5■■□□□ 1.83
USP42-201ENST00000306177 SHROOM4Q9ULL8 1493 aa26.23■■□□□ 1.79
USP42-201ENST00000306177 EHMT2Q96KQ7 1210 aa25.41■■□□□ 1.66
USP42-201ENST00000306177 APLP2Q06481 763 aa25.08■■□□□ 1.61
USP42-201ENST00000306177 FAM9AQ8IZU1 332 aaPredicted RBP24.93■■□□□ 1.58
USP42-201ENST00000306177 PELP1Q8IZL8 1130 aaKnown RBP24.76■■□□□ 1.55
USP42-201ENST00000306177 PCGF6Q9BYE7 350 aa24.59■■□□□ 1.53
USP42-201ENST00000306177 TRIM41Q8WV44 630 aa24.59■■□□□ 1.53
USP42-201ENST00000306177 TTBK1Q5TCY1 1321 aaPredicted RBP24.57■■□□□ 1.52
USP42-201ENST00000306177 RANGAP1P46060 587 aaPredicted RBP24.38■■□□□ 1.49
USP42-201ENST00000306177 ZEB1P37275 1124 aaPredicted RBP24.28■■□□□ 1.48
USP42-201ENST00000306177 UBTFP17480 764 aaKnown RBP24.22■■□□□ 1.47
USP42-201ENST00000306177 CCER1Q8TC90 406 aaPredicted RBP24.19■■□□□ 1.46
USP42-201ENST00000306177 ATP1B4Q9UN42 357 aaPredicted RBP24.17■■□□□ 1.46
USP42-201ENST00000306177 CENPBP07199 599 aaPredicted RBP24.05■■□□□ 1.44
USP42-201ENST00000306177 PPARGC1BQ86YN6 1023 aaKnown RBP23.74■■□□□ 1.39
USP42-201ENST00000306177 CHIC1Q5VXU3 224 aa23.71■■□□□ 1.39
USP42-201ENST00000306177 TRIM26Q12899 539 aaPredicted RBP23.68■■□□□ 1.38
USP42-201ENST00000306177 ABCC9O60706 1549 aa23.67■■□□□ 1.38
USP42-201ENST00000306177 ERICH6Q7L0X2 663 aa23.64■■□□□ 1.37
USP42-201ENST00000306177 LOC105371045A0A1W2PR82 267 aa23.58■■□□□ 1.37
USP42-201ENST00000306177 NEFLP07196 543 aa23.54■■□□□ 1.36
USP42-201ENST00000306177 YTHDC1Q96MU7 727 aaKnown RBP23.51■■□□□ 1.35
USP42-201ENST00000306177 PABPN1Q86U42 306 aaKnown RBP eCLIP23.44■■□□□ 1.34
USP42-201ENST00000306177 ITGAEP38570 1179 aa23.37■■□□□ 1.33
USP42-201ENST00000306177 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.36■■□□□ 1.33
USP42-201ENST00000306177 HNRNPUL2Q1KMD3 747 aaKnown RBP23.36■■□□□ 1.33
USP42-201ENST00000306177 HRCP23327 699 aa23.33■■□□□ 1.33
USP42-201ENST00000306177 MYT1LQ9UL68 1186 aa23.21■■□□□ 1.31
USP42-201ENST00000306177 MYT1Q01538 1121 aa23.12■■□□□ 1.29
USP42-201ENST00000306177 POLR3GLQ9BT43 218 aa23.08■■□□□ 1.29
USP42-201ENST00000306177 ZCCHC6Q5VYS8 1495 aaKnown RBP22.86■■□□□ 1.25
USP42-201ENST00000306177 FAM50AQ14320 339 aaKnown RBP22.85■■□□□ 1.25
USP42-201ENST00000306177 CNGB1Q14028 1251 aaPredicted RBP22.8■■□□□ 1.24
USP42-201ENST00000306177 DAXXQ9UER7 740 aaPredicted RBP22.76■■□□□ 1.23
USP42-201ENST00000306177 SCRIBQ14160 1630 aa22.76■■□□□ 1.23
USP42-201ENST00000306177 DIEXFQ68CQ4 756 aaKnown RBP22.76■■□□□ 1.23
USP42-201ENST00000306177 TRIM52Q96A61 297 aa22.7■■□□□ 1.22
USP42-201ENST00000306177 CCDC180Q9P1Z9 1646 aa22.66■■□□□ 1.22
USP42-201ENST00000306177 CSRNP3Q8WYN3 585 aa22.64■■□□□ 1.22
USP42-201ENST00000306177 SLC4A1APQ9BWU0 796 aaKnown RBP22.64■■□□□ 1.22
USP42-201ENST00000306177 FBLN2P98095 1184 aa22.61■■□□□ 1.21
USP42-201ENST00000306177 NEUROD1Q13562 356 aa22.59■■□□□ 1.21
USP42-201ENST00000306177 P3H3Q8IVL6 736 aa22.48■■□□□ 1.19
USP42-201ENST00000306177 ZNF326Q5BKZ1 582 aaKnown RBP22.38■■□□□ 1.17
USP42-201ENST00000306177 ANP32CO43423 234 aa22.37■■□□□ 1.17
USP42-201ENST00000306177 ARID3CA6NKF2 412 aa22.35■■□□□ 1.17
USP42-201ENST00000306177 CLSPNQ9HAW4 1339 aa22.35■■□□□ 1.17
USP42-201ENST00000306177 ZNF316A6NFI3 1004 aaPredicted RBP22.31■■□□□ 1.16
USP42-201ENST00000306177 RB1CC1Q8TDY2 1594 aa22.22■■□□□ 1.15
USP42-201ENST00000306177 RTL5Q5HYW3 569 aaPredicted RBP22.21■■□□□ 1.15
USP42-201ENST00000306177 CDK11AQ9UQ88 783 aaPredicted RBP22.18■■□□□ 1.14
USP42-201ENST00000306177 ZNF777Q9ULD5 760 aaPredicted RBP22.16■■□□□ 1.14
USP42-201ENST00000306177 GTF3C3Q9Y5Q9 886 aa22.16■■□□□ 1.14
USP42-201ENST00000306177 BCANQ96GW7 911 aa22.14■■□□□ 1.13
USP42-201ENST00000306177 DCAF1Q9Y4B6 1507 aa22.1■■□□□ 1.13
USP42-201ENST00000306177 RSF1Q96T23 1441 aaPredicted RBP22.07■■□□□ 1.12
USP42-201ENST00000306177 NACADO15069 1562 aa22.04■■□□□ 1.12
USP42-201ENST00000306177 ZBTB47Q9UFB7 747 aaPredicted RBP21.99■■□□□ 1.11
USP42-201ENST00000306177 CANXP27824 592 aaKnown RBP21.95■■□□□ 1.1
USP42-201ENST00000306177 NEFMP07197 916 aa21.94■■□□□ 1.1
USP42-201ENST00000306177 TONSLQ96HA7 1378 aa21.94■■□□□ 1.1
USP42-201ENST00000306177 ACIN1Q9UKV3 1341 aaKnown RBP21.91■■□□□ 1.1
USP42-201ENST00000306177 CLIP1P30622 1438 aa21.87■■□□□ 1.09
USP42-201ENST00000306177 BAZ1BQ9UIG0 1483 aaKnown RBP21.83■■□□□ 1.09
USP42-201ENST00000306177 EEA1Q15075 1411 aa21.82■■□□□ 1.08
USP42-201ENST00000306177 SLC24A1O60721 1099 aa21.81■■□□□ 1.08
USP42-201ENST00000306177 CHIC2Q9UKJ5 165 aa21.81■■□□□ 1.08
USP42-201ENST00000306177 MTUS2Q5JR59 1369 aa21.8■■□□□ 1.08
USP42-201ENST00000306177 NPM1P06748 294 aaKnown RBP eCLIP21.79■■□□□ 1.08
USP42-201ENST00000306177 WRNQ14191 1432 aaPredicted RBP eCLIP21.79■■□□□ 1.08
USP42-201ENST00000306177 CHMP7Q8WUX9 453 aaPredicted RBP21.79■■□□□ 1.08
USP42-201ENST00000306177 ESF1Q9H501 851 aaKnown RBP21.78■■□□□ 1.08
USP42-201ENST00000306177 MYO15BQ96JP2 1530 aa21.77■■□□□ 1.08
USP42-201ENST00000306177 GOLGA3Q08378 1498 aa21.75■■□□□ 1.07
USP42-201ENST00000306177 CHGAP10645 457 aaKnown RBP21.73■■□□□ 1.07
USP42-201ENST00000306177 CEP162Q5TB80 1403 aa21.71■■□□□ 1.07
USP42-201ENST00000306177 DDX10Q13206 875 aaKnown RBP21.7■■□□□ 1.06
USP42-201ENST00000306177 BAZ1AQ9NRL2 1556 aaPredicted RBP21.7■■□□□ 1.06
USP42-201ENST00000306177 BCL11AQ9H165 835 aa21.69■■□□□ 1.06
USP42-201ENST00000306177 STAG3Q9UJ98 1225 aa21.69■■□□□ 1.06
USP42-201ENST00000306177 TSPY4P0CV99 314 aa21.67■■□□□ 1.06
USP42-201ENST00000306177 TSPY10P0CW01 314 aa21.67■■□□□ 1.06
USP42-201ENST00000306177 ANP32AP39687 249 aaKnown RBP21.66■■□□□ 1.06
USP42-201ENST00000306177 CECR2Q9BXF3 1484 aa21.65■■□□□ 1.06
USP42-201ENST00000306177 HNRNPUQ00839 825 aaKnown RBP eCLIP21.65■■□□□ 1.06
USP42-201ENST00000306177 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.65■■□□□ 1.06
USP42-201ENST00000306177 KIF27Q86VH2 1401 aa21.63■■□□□ 1.05
USP42-201ENST00000306177 FKBP8Q14318 412 aa21.61■■□□□ 1.05
USP42-201ENST00000306177 FAM9BQ8IZU0 186 aa21.6■■□□□ 1.05
USP42-201ENST00000306177 TNIKQ9UKE5 1360 aa21.56■■□□□ 1.04
USP42-201ENST00000306177 CEP164Q9UPV0 1460 aa21.56■■□□□ 1.04
USP42-201ENST00000306177 TMC1Q8TDI8 760 aa21.52■■□□□ 1.04
USP42-201ENST00000306177 RRP7BPQ9NSQ0 103 aa21.52■■□□□ 1.03
USP42-201ENST00000306177 NPM2Q86SE8 214 aaKnown RBP21.51■■□□□ 1.03
USP42-201ENST00000306177 KDM2AQ9Y2K7 1162 aa21.49■■□□□ 1.03
USP42-201ENST00000306177 PLEKHD1A6NEE1 506 aa21.48■■□□□ 1.03
USP42-201ENST00000306177 PLPPR3Q6T4P5 718 aa21.46■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 162.7 ms