RNA–Protein interactions for RNA: ENST00000295522.3

CLDN1-201, Transcript of claudin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLDN1, Length 3,481 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN1-201ENST00000295522 KIF7Q2M1P5 1343 aa13.38□□□□□ -0.27
CLDN1-201ENST00000295522 LRRC9Q6ZRR7 1453 aa13.37□□□□□ -0.27
CLDN1-201ENST00000295522 HSP90AA1P07900 732 aaKnown RBP13.37□□□□□ -0.27
CLDN1-201ENST00000295522 GZF1Q9H116 711 aaPredicted RBP13.37□□□□□ -0.27
CLDN1-201ENST00000295522 PNNQ9H307 717 aaKnown RBP13.37□□□□□ -0.27
CLDN1-201ENST00000295522 PRXQ9BXM0 1461 aa13.36□□□□□ -0.27
CLDN1-201ENST00000295522 MS4A1P11836 297 aa13.35□□□□□ -0.27
CLDN1-201ENST00000295522 POGKQ9P215 609 aa13.35□□□□□ -0.27
CLDN1-201ENST00000295522 CRBNQ96SW2 442 aa13.34□□□□□ -0.27
CLDN1-201ENST00000295522 CARMIL1Q5VZK9 1371 aa13.34□□□□□ -0.27
CLDN1-201ENST00000295522 RRAGDQ9NQL2 400 aaPredicted RBP13.33□□□□□ -0.27
CLDN1-201ENST00000295522 MTUS2Q5JR59 1369 aa13.33□□□□□ -0.28
CLDN1-201ENST00000295522 PLEKHG5O94827 1062 aa13.33□□□□□ -0.28
CLDN1-201ENST00000295522 PODXL2Q9NZ53 605 aa13.33□□□□□ -0.28
CLDN1-201ENST00000295522 CADPSQ9ULU8 1353 aa13.33□□□□□ -0.28
CLDN1-201ENST00000295522 SPRYD3Q8NCJ5 442 aa13.32□□□□□ -0.28
CLDN1-201ENST00000295522 CDCA7LQ96GN5 454 aa13.32□□□□□ -0.28
CLDN1-201ENST00000295522 TIAM1Q13009 1591 aa13.31□□□□□ -0.28
CLDN1-201ENST00000295522 UACAQ9BZF9 1416 aa13.31□□□□□ -0.28
CLDN1-201ENST00000295522 NBPF8Q3BBV2 869 aa13.3□□□□□ -0.28
CLDN1-201ENST00000295522 ERICH3Q5RHP9 1530 aa13.29□□□□□ -0.28
CLDN1-201ENST00000295522 TOP2BQ02880 1626 aa13.29□□□□□ -0.28
CLDN1-201ENST00000295522 A0A0U1RQG5 324 aaPredicted RBP13.28□□□□□ -0.28
CLDN1-201ENST00000295522 PNISRQ8TF01 805 aaKnown RBP13.28□□□□□ -0.28
CLDN1-201ENST00000295522 IGF1RP08069 1367 aa13.28□□□□□ -0.28
CLDN1-201ENST00000295522 RNF123Q5XPI4 1314 aa13.28□□□□□ -0.28
CLDN1-201ENST00000295522 FHOD3Q2V2M9 1422 aa13.28□□□□□ -0.28
CLDN1-201ENST00000295522 MPHOSPH9Q99550 1183 aa13.27□□□□□ -0.28
CLDN1-201ENST00000295522 CFTRP13569 1480 aa13.27□□□□□ -0.29
CLDN1-201ENST00000295522 CUX1P39880 1505 aa13.27□□□□□ -0.29
CLDN1-201ENST00000295522 AQRO60306 1485 aaKnown RBP eCLIP13.27□□□□□ -0.29
CLDN1-201ENST00000295522 ARID3AQ99856 593 aa13.26□□□□□ -0.29
CLDN1-201ENST00000295522 FMN1Q68DA7 1419 aa13.25□□□□□ -0.29
CLDN1-201ENST00000295522 FAM161AQ3B820 660 aa13.25□□□□□ -0.29
CLDN1-201ENST00000295522 L1TD1Q5T7N2 865 aaKnown RBP13.25□□□□□ -0.29
CLDN1-201ENST00000295522 SLC4A1APQ9BWU0 796 aaKnown RBP13.24□□□□□ -0.29
CLDN1-201ENST00000295522 NCOA1Q15788 1441 aa13.24□□□□□ -0.29
CLDN1-201ENST00000295522 C20orf194Q5TEA3 1177 aa13.23□□□□□ -0.29
CLDN1-201ENST00000295522 KDM2AQ9Y2K7 1162 aa13.23□□□□□ -0.29
CLDN1-201ENST00000295522 FGD6Q6ZV73 1430 aa13.21□□□□□ -0.29
CLDN1-201ENST00000295522 NCOA2Q15596 1464 aa13.21□□□□□ -0.29
CLDN1-201ENST00000295522 GOLGA6L3A6NEY3 463 aa13.21□□□□□ -0.29
CLDN1-201ENST00000295522 PTPRKQ15262 1439 aa13.21□□□□□ -0.29
CLDN1-201ENST00000295522 PANK2Q9BZ23 570 aa13.21□□□□□ -0.3
CLDN1-201ENST00000295522 FANCD2Q9BXW9 1451 aa13.2□□□□□ -0.3
CLDN1-201ENST00000295522 BECN1Q14457 450 aa13.19□□□□□ -0.3
CLDN1-201ENST00000295522 CC2D1BQ5T0F9 858 aaKnown RBP13.19□□□□□ -0.3
CLDN1-201ENST00000295522 TRIM44Q96DX7 344 aaPredicted RBP13.18□□□□□ -0.3
CLDN1-201ENST00000295522 HFM1A2PYH4 1435 aa13.18□□□□□ -0.3
CLDN1-201ENST00000295522 NAIPQ13075 1403 aa13.18□□□□□ -0.3
CLDN1-201ENST00000295522 RRP9O43818 475 aaKnown RBP13.18□□□□□ -0.3
CLDN1-201ENST00000295522 CARD11Q9BXL7 1154 aa13.16□□□□□ -0.3
CLDN1-201ENST00000295522 MAP3K1Q13233 1512 aa13.16□□□□□ -0.3
CLDN1-201ENST00000295522 KTN1Q86UP2 1357 aaKnown RBP13.15□□□□□ -0.3
CLDN1-201ENST00000295522 C8orf34Q49A92 452 aa13.15□□□□□ -0.3
CLDN1-201ENST00000295522 CENPQQ7L2Z9 268 aaPredicted RBP13.15□□□□□ -0.3
CLDN1-201ENST00000295522 USP47Q96K76 1375 aa13.14□□□□□ -0.31
CLDN1-201ENST00000295522 XRCC6P12956 609 aaKnown RBP eCLIP13.14□□□□□ -0.31
CLDN1-201ENST00000295522 CANXP27824 592 aaKnown RBP13.14□□□□□ -0.31
CLDN1-201ENST00000295522 MYBBP1AQ9BQG0 1328 aaKnown RBP13.13□□□□□ -0.31
CLDN1-201ENST00000295522 UPF2Q9HAU5 1272 aaKnown RBP13.13□□□□□ -0.31
CLDN1-201ENST00000295522 ZNF777Q9ULD5 760 aaPredicted RBP13.12□□□□□ -0.31
CLDN1-201ENST00000295522 FGD5Q6ZNL6 1462 aa13.12□□□□□ -0.31
CLDN1-201ENST00000295522 MYH16Q9H6N6 1097 aa13.12□□□□□ -0.31
CLDN1-201ENST00000295522 RAD54L2Q9Y4B4 1467 aa13.12□□□□□ -0.31
CLDN1-201ENST00000295522 PCF11O94913 1555 aaKnown RBP13.11□□□□□ -0.31
CLDN1-201ENST00000295522 DHX29Q7Z478 1369 aaKnown RBP13.11□□□□□ -0.31
CLDN1-201ENST00000295522 TDRD9Q8NDG6 1382 aaKnown RBP13.11□□□□□ -0.31
CLDN1-201ENST00000295522 PTPN23Q9H3S7 1636 aa13.11□□□□□ -0.31
CLDN1-201ENST00000295522 RBM10P98175 930 aaKnown RBP13.11□□□□□ -0.31
CLDN1-201ENST00000295522 PDE3BQ13370 1112 aa13.1□□□□□ -0.31
CLDN1-201ENST00000295522 ST20-MTHFSA0A0A6YYL1 179 aa13.1□□□□□ -0.31
CLDN1-201ENST00000295522 PDS5BQ9NTI5 1447 aa13.1□□□□□ -0.31
CLDN1-201ENST00000295522 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.09□□□□□ -0.31
CLDN1-201ENST00000295522 ERCC6Q03468 1493 aa13.09□□□□□ -0.31
CLDN1-201ENST00000295522 NLRP13Q86W25 1043 aa13.09□□□□□ -0.31
CLDN1-201ENST00000295522 KIF15Q9NS87 1388 aa13.09□□□□□ -0.31
CLDN1-201ENST00000295522 BIVM-ERCC5R4GMW8 1640 aa13.08□□□□□ -0.31
CLDN1-201ENST00000295522 CLCN1P35523 988 aa13.08□□□□□ -0.32
CLDN1-201ENST00000295522 KDM5BQ9UGL1 1544 aa13.08□□□□□ -0.32
CLDN1-201ENST00000295522 RALBP1Q15311 655 aa13.08□□□□□ -0.32
CLDN1-201ENST00000295522 SEC24BO95487 1268 aa13.07□□□□□ -0.32
CLDN1-201ENST00000295522 LAMC3Q9Y6N6 1575 aa13.07□□□□□ -0.32
CLDN1-201ENST00000295522 ESPNB1AK53 854 aa13.06□□□□□ -0.32
CLDN1-201ENST00000295522 ZBTB7CA1YPR0 619 aa13.06□□□□□ -0.32
CLDN1-201ENST00000295522 FAM13BQ9NYF5 915 aa13.05□□□□□ -0.32
CLDN1-201ENST00000295522 KIF21AQ7Z4S6 1674 aa13.05□□□□□ -0.32
CLDN1-201ENST00000295522 WDR43Q15061 677 aaKnown RBP eCLIP13.05□□□□□ -0.32
CLDN1-201ENST00000295522 BRD4O60885 1362 aaPredicted RBP13.04□□□□□ -0.32
CLDN1-201ENST00000295522 TRAK2O60296 914 aa13.03□□□□□ -0.32
CLDN1-201ENST00000295522 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.03□□□□□ -0.32
CLDN1-201ENST00000295522 MYOM3Q5VTT5 1437 aa13.03□□□□□ -0.32
CLDN1-201ENST00000295522 URB2Q14146 1524 aaKnown RBP13.02□□□□□ -0.32
CLDN1-201ENST00000295522 KIAA1211Q6ZU35 1233 aa13.02□□□□□ -0.33
CLDN1-201ENST00000295522 TOPBP1Q92547 1522 aa13.01□□□□□ -0.33
CLDN1-201ENST00000295522 KDM2BQ8NHM5 1336 aa13□□□□□ -0.33
CLDN1-201ENST00000295522 MCM4P33991 863 aa13□□□□□ -0.33
CLDN1-201ENST00000295522 CCDC146Q8IYE0 955 aa13□□□□□ -0.33
CLDN1-201ENST00000295522 MRE11P49959 708 aa13□□□□□ -0.33
CLDN1-201ENST00000295522 FBLN2P98095 1184 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 85 ms