RNA–Protein interactions for RNA: ENST00000263187.3

MSH4-201, Transcript of mutS homolog 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH4, Length 3,266 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4-201ENST00000263187 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.65□□□□□ -0.39
MSH4-201ENST00000263187 MRS2Q9HD23 443 aa12.64□□□□□ -0.39
MSH4-201ENST00000263187 MAGI3Q5TCQ9 1506 aa12.64□□□□□ -0.39
MSH4-201ENST00000263187 NBPF8Q3BBV2 869 aa12.64□□□□□ -0.39
MSH4-201ENST00000263187 SLC4A1APQ9BWU0 796 aaKnown RBP12.63□□□□□ -0.39
MSH4-201ENST00000263187 CDK13Q14004 1512 aaKnown RBP12.63□□□□□ -0.39
MSH4-201ENST00000263187 LRRIQ1Q96JM4 1722 aa12.62□□□□□ -0.39
MSH4-201ENST00000263187 FBLN2P98095 1184 aa12.62□□□□□ -0.39
MSH4-201ENST00000263187 KDM6BO15054 1643 aa12.62□□□□□ -0.39
MSH4-201ENST00000263187 B4GALNT3Q6L9W6 998 aa12.61□□□□□ -0.39
MSH4-201ENST00000263187 MSH5O43196 834 aa12.59□□□□□ -0.39
MSH4-201ENST00000263187 DENND4BO75064 1496 aaPredicted RBP12.58□□□□□ -0.4
MSH4-201ENST00000263187 CHMP7Q8WUX9 453 aaPredicted RBP12.58□□□□□ -0.4
MSH4-201ENST00000263187 IQGAP2Q13576 1575 aa12.58□□□□□ -0.4
MSH4-201ENST00000263187 KIAA0586Q9BVV6 1533 aa12.58□□□□□ -0.4
MSH4-201ENST00000263187 CDK11AQ9UQ88 783 aaPredicted RBP12.58□□□□□ -0.4
MSH4-201ENST00000263187 PRKRIP1Q9H875 184 aaPredicted RBP12.57□□□□□ -0.4
MSH4-201ENST00000263187 KDM5BQ9UGL1 1544 aa12.57□□□□□ -0.4
MSH4-201ENST00000263187 SUPT6HQ7KZ85 1726 aaKnown RBP12.57□□□□□ -0.4
MSH4-201ENST00000263187 EHBP1L1Q8N3D4 1523 aa12.55□□□□□ -0.4
MSH4-201ENST00000263187 UGGT2Q9NYU1 1516 aa12.55□□□□□ -0.4
MSH4-201ENST00000263187 SAMD9Q5K651 1589 aa12.54□□□□□ -0.4
MSH4-201ENST00000263187 EPRSP07814 1512 aaKnown RBP12.54□□□□□ -0.4
MSH4-201ENST00000263187 KDM2AQ9Y2K7 1162 aa12.54□□□□□ -0.4
MSH4-201ENST00000263187 KIF7Q2M1P5 1343 aa12.53□□□□□ -0.4
MSH4-201ENST00000263187 CCDC7Q96M83 1385 aa12.53□□□□□ -0.4
MSH4-201ENST00000263187 OSCARQ8IYS5 282 aa12.53□□□□□ -0.4
MSH4-201ENST00000263187 SALL2Q9Y467 1007 aaPredicted RBP12.52□□□□□ -0.4
MSH4-201ENST00000263187 ERICH6Q7L0X2 663 aa12.51□□□□□ -0.41
MSH4-201ENST00000263187 CFDP1Q9UEE9 299 aaPredicted RBP12.51□□□□□ -0.41
MSH4-201ENST00000263187 CNTLNQ9NXG0 1405 aa12.51□□□□□ -0.41
MSH4-201ENST00000263187 KIAA0556O60303 1618 aa12.49□□□□□ -0.41
MSH4-201ENST00000263187 ERCC6L2Q5T890 1561 aa12.49□□□□□ -0.41
MSH4-201ENST00000263187 DISP1Q96F81 1524 aa12.49□□□□□ -0.41
MSH4-201ENST00000263187 PKD2Q13563 968 aa12.49□□□□□ -0.41
MSH4-201ENST00000263187 RIMBP3CA6NJZ7 1639 aa12.49□□□□□ -0.41
MSH4-201ENST00000263187 RIMBP3BA6NNM3 1639 aa12.49□□□□□ -0.41
MSH4-201ENST00000263187 RIMBP3Q9UFD9 1639 aa12.49□□□□□ -0.41
MSH4-201ENST00000263187 ANKRD30BQ9BXX2 1392 aa12.48□□□□□ -0.41
MSH4-201ENST00000263187 PPP4R2Q9NY27 417 aa12.47□□□□□ -0.41
MSH4-201ENST00000263187 PRG4Q92954 1404 aaPredicted RBP12.47□□□□□ -0.41
MSH4-201ENST00000263187 ABCC5O15440 1437 aa12.47□□□□□ -0.41
MSH4-201ENST00000263187 DAPK1P53355 1430 aa12.46□□□□□ -0.41
MSH4-201ENST00000263187 ARHGEF11O15085 1522 aa12.46□□□□□ -0.41
MSH4-201ENST00000263187 NCOA1Q15788 1441 aa12.45□□□□□ -0.42
MSH4-201ENST00000263187 HECW1Q76N89 1606 aa12.44□□□□□ -0.42
MSH4-201ENST00000263187 TCOF1Q13428 1488 aaKnown RBP12.44□□□□□ -0.42
MSH4-201ENST00000263187 AKNAQ7Z591 1439 aa12.44□□□□□ -0.42
MSH4-201ENST00000263187 ZBED9Q6R2W3 1325 aa12.42□□□□□ -0.42
MSH4-201ENST00000263187 MIA2Q96PC5 1412 aa12.42□□□□□ -0.42
MSH4-201ENST00000263187 CARD11Q9BXL7 1154 aa12.42□□□□□ -0.42
MSH4-201ENST00000263187 BCL11AQ9H165 835 aa12.42□□□□□ -0.42
MSH4-201ENST00000263187 RGL3Q3MIN7 710 aa12.41□□□□□ -0.42
MSH4-201ENST00000263187 TMC1Q8TDI8 760 aa12.41□□□□□ -0.42
MSH4-201ENST00000263187 JPH4Q96JJ6 628 aa12.41□□□□□ -0.42
MSH4-201ENST00000263187 RPRD2Q5VT52 1461 aaKnown RBP12.41□□□□□ -0.42
MSH4-201ENST00000263187 USP47Q96K76 1375 aa12.41□□□□□ -0.42
MSH4-201ENST00000263187 DCAF11Q8TEB1 546 aa12.4□□□□□ -0.42
MSH4-201ENST00000263187 PLB1Q6P1J6 1458 aa12.39□□□□□ -0.43
MSH4-201ENST00000263187 HNRNPMP52272 730 aaKnown RBP eCLIP12.39□□□□□ -0.43
MSH4-201ENST00000263187 NUP153P49790 1475 aaKnown RBP12.39□□□□□ -0.43
MSH4-201ENST00000263187 ST20-MTHFSA0A0A6YYL1 179 aa12.39□□□□□ -0.43
MSH4-201ENST00000263187 NBR1Q14596 966 aa12.39□□□□□ -0.43
MSH4-201ENST00000263187 GCC2Q8IWJ2 1684 aa12.39□□□□□ -0.43
MSH4-201ENST00000263187 CCDC136Q96JN2 1154 aa12.38□□□□□ -0.43
MSH4-201ENST00000263187 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.38□□□□□ -0.43
MSH4-201ENST00000263187 TEX14Q8IWB6 1497 aa12.38□□□□□ -0.43
MSH4-201ENST00000263187 NUP155O75694 1391 aa12.38□□□□□ -0.43
MSH4-201ENST00000263187 SPATA31E1Q6ZUB1 1445 aa12.36□□□□□ -0.43
MSH4-201ENST00000263187 CARMIL2Q6F5E8 1435 aa12.36□□□□□ -0.43
MSH4-201ENST00000263187 FANCIQ9NVI1 1328 aa12.35□□□□□ -0.43
MSH4-201ENST00000263187 ABCA8O94911 1581 aa12.34□□□□□ -0.43
MSH4-201ENST00000263187 PZPP20742 1482 aa12.34□□□□□ -0.43
MSH4-201ENST00000263187 ROCK1Q13464 1354 aa12.34□□□□□ -0.43
MSH4-201ENST00000263187 PLEKHD1A6NEE1 506 aa12.34□□□□□ -0.43
MSH4-201ENST00000263187 DHX29Q7Z478 1369 aaKnown RBP12.34□□□□□ -0.43
MSH4-201ENST00000263187 ADCY10Q96PN6 1610 aa12.33□□□□□ -0.43
MSH4-201ENST00000263187 CAMSAP2Q08AD1 1489 aa12.33□□□□□ -0.44
MSH4-201ENST00000263187 PAK3O75914 559 aaPredicted RBP12.33□□□□□ -0.44
MSH4-201ENST00000263187 NUDCQ9Y266 331 aa12.33□□□□□ -0.44
MSH4-201ENST00000263187 TSPY4P0CV99 314 aa12.33□□□□□ -0.44
MSH4-201ENST00000263187 TSPY10P0CW01 314 aa12.33□□□□□ -0.44
MSH4-201ENST00000263187 NPM2Q86SE8 214 aaKnown RBP12.33□□□□□ -0.44
MSH4-201ENST00000263187 PNISRQ8TF01 805 aaKnown RBP12.32□□□□□ -0.44
MSH4-201ENST00000263187 UHRF1BP1LA0JNW5 1464 aa12.31□□□□□ -0.44
MSH4-201ENST00000263187 CC2D1BQ5T0F9 858 aaKnown RBP12.31□□□□□ -0.44
MSH4-201ENST00000263187 RAPGEF6Q8TEU7 1601 aa12.31□□□□□ -0.44
MSH4-201ENST00000263187 ANKRD50Q9ULJ7 1429 aa12.31□□□□□ -0.44
MSH4-201ENST00000263187 KIAA1107Q9UPP5 1409 aa12.31□□□□□ -0.44
MSH4-201ENST00000263187 GPATCH8Q9UKJ3 1502 aaKnown RBP12.3□□□□□ -0.44
MSH4-201ENST00000263187 ANKRD30AQ9BXX3 1397 aa12.3□□□□□ -0.44
MSH4-201ENST00000263187 NBPF1Q3BBV0 1214 aa12.3□□□□□ -0.44
MSH4-201ENST00000263187 TROQ12816 1431 aaPredicted RBP12.3□□□□□ -0.44
MSH4-201ENST00000263187 DNMT1P26358 1616 aaKnown RBP12.3□□□□□ -0.44
MSH4-201ENST00000263187 KIF14Q15058 1648 aa12.29□□□□□ -0.44
MSH4-201ENST00000263187 SKAP1Q86WV1 359 aa12.29□□□□□ -0.44
MSH4-201ENST00000263187 ABCC2Q92887 1545 aa12.29□□□□□ -0.44
MSH4-201ENST00000263187 ERICH6BQ5W0A0 696 aa12.29□□□□□ -0.44
MSH4-201ENST00000263187 BCORL1Q5H9F3 1711 aa12.28□□□□□ -0.44
MSH4-201ENST00000263187 PLIN1O60240 522 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms