RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 CFDP1Q9UEE9 299 aaPredicted RBP29.55■■■□□ 2.32
TRIM28-201ENST00000253024 PRG4Q92954 1404 aaPredicted RBP29.5■■■□□ 2.31
TRIM28-201ENST00000253024 RBM19Q9Y4C8 960 aaKnown RBP29.49■■■□□ 2.31
TRIM28-201ENST00000253024 HECW1Q76N89 1606 aa29.48■■■□□ 2.31
TRIM28-201ENST00000253024 KDM2AQ9Y2K7 1162 aa29.47■■■□□ 2.31
TRIM28-201ENST00000253024 PBRM1Q86U86 1689 aa29.44■■■□□ 2.3
TRIM28-201ENST00000253024 CDK11AQ9UQ88 783 aaPredicted RBP29.43■■■□□ 2.3
TRIM28-201ENST00000253024 ARHGEF11O15085 1522 aa29.43■■■□□ 2.3
TRIM28-201ENST00000253024 DAPK1P53355 1430 aa29.43■■■□□ 2.3
TRIM28-201ENST00000253024 ABCC5O15440 1437 aa29.42■■■□□ 2.3
TRIM28-201ENST00000253024 PRKRIP1Q9H875 184 aaPredicted RBP29.42■■■□□ 2.3
TRIM28-201ENST00000253024 PKD2Q13563 968 aa29.4■■■□□ 2.3
TRIM28-201ENST00000253024 ADAMTS12P58397 1594 aa29.4■■■□□ 2.3
TRIM28-201ENST00000253024 WDR62O43379 1518 aa29.4■■■□□ 2.3
TRIM28-201ENST00000253024 MRC2Q9UBG0 1479 aa29.39■■■□□ 2.3
TRIM28-201ENST00000253024 KIF7Q2M1P5 1343 aa29.39■■■□□ 2.3
TRIM28-201ENST00000253024 PLB1Q6P1J6 1458 aa29.38■■■□□ 2.29
TRIM28-201ENST00000253024 TCOF1Q13428 1488 aaKnown RBP29.38■■■□□ 2.29
TRIM28-201ENST00000253024 CCDC7Q96M83 1385 aa29.38■■■□□ 2.29
TRIM28-201ENST00000253024 ANKRD30BQ9BXX2 1392 aa29.36■■■□□ 2.29
TRIM28-201ENST00000253024 NUP153P49790 1475 aaKnown RBP29.36■■■□□ 2.29
TRIM28-201ENST00000253024 B4GALNT3Q6L9W6 998 aa29.34■■■□□ 2.29
TRIM28-201ENST00000253024 MIA2Q96PC5 1412 aa29.33■■■□□ 2.29
TRIM28-201ENST00000253024 DISP1Q96F81 1524 aa29.32■■■□□ 2.28
TRIM28-201ENST00000253024 CNTLNQ9NXG0 1405 aa29.32■■■□□ 2.28
TRIM28-201ENST00000253024 ANP32EQ9BTT0 268 aa29.29■■■□□ 2.28
TRIM28-201ENST00000253024 ERCC6Q03468 1493 aa29.28■■■□□ 2.28
TRIM28-201ENST00000253024 JPH4Q96JJ6 628 aa29.28■■■□□ 2.28
TRIM28-201ENST00000253024 SALL2Q9Y467 1007 aaPredicted RBP29.28■■■□□ 2.28
TRIM28-201ENST00000253024 HNRNPMP52272 730 aaKnown RBP eCLIP29.27■■■□□ 2.283e-7■■■□□ 14.9
TRIM28-201ENST00000253024 GCC2Q8IWJ2 1684 aa29.25■■■□□ 2.27
TRIM28-201ENST00000253024 KIAA0586Q9BVV6 1533 aa29.23■■■□□ 2.27
TRIM28-201ENST00000253024 RPRD2Q5VT52 1461 aaKnown RBP29.21■■■□□ 2.27
TRIM28-201ENST00000253024 NCOA1Q15788 1441 aa29.21■■■□□ 2.27
TRIM28-201ENST00000253024 GRIN2AQ12879 1464 aa29.21■■■□□ 2.27
TRIM28-201ENST00000253024 RGL3Q3MIN7 710 aa29.2■■■□□ 2.27
TRIM28-201ENST00000253024 GRWD1Q9BQ67 446 aaKnown RBP eCLIP29.2■■■□□ 2.272e-10■■■□□ 15.8
TRIM28-201ENST00000253024 KIAA0556O60303 1618 aa29.2■■■□□ 2.27
TRIM28-201ENST00000253024 PLEKHD1A6NEE1 506 aa29.2■■■□□ 2.26
TRIM28-201ENST00000253024 IFT140Q96RY7 1462 aa29.18■■■□□ 2.26
TRIM28-201ENST00000253024 NUP155O75694 1391 aa29.18■■■□□ 2.26
TRIM28-201ENST00000253024 CAMSAP2Q08AD1 1489 aa29.17■■■□□ 2.26
TRIM28-201ENST00000253024 DCAF11Q8TEB1 546 aa29.16■■■□□ 2.26
TRIM28-201ENST00000253024 CARD11Q9BXL7 1154 aa29.16■■■□□ 2.26
TRIM28-201ENST00000253024 TEX14Q8IWB6 1497 aa29.15■■■□□ 2.26
TRIM28-201ENST00000253024 USP47Q96K76 1375 aa29.14■■■□□ 2.26
TRIM28-201ENST00000253024 AKNAQ7Z591 1439 aa29.14■■■□□ 2.26
TRIM28-201ENST00000253024 KIF14Q15058 1648 aa29.12■■■□□ 2.25
TRIM28-201ENST00000253024 RAPGEF6Q8TEU7 1601 aa29.12■■■□□ 2.25
TRIM28-201ENST00000253024 TROQ12816 1431 aaPredicted RBP29.12■■■□□ 2.25
TRIM28-201ENST00000253024 MSH5O43196 834 aa29.12■■■□□ 2.25
TRIM28-201ENST00000253024 ROCK1Q13464 1354 aa29.11■■■□□ 2.25
TRIM28-201ENST00000253024 PZPP20742 1482 aa29.11■■■□□ 2.25
TRIM28-201ENST00000253024 GPATCH8Q9UKJ3 1502 aaKnown RBP29.11■■■□□ 2.25
TRIM28-201ENST00000253024 TSPY4P0CV99 314 aa29.1■■■□□ 2.25
TRIM28-201ENST00000253024 TSPY10P0CW01 314 aa29.1■■■□□ 2.25
TRIM28-201ENST00000253024 EIF4G3O43432 1585 aaKnown RBP29.09■■■□□ 2.25
TRIM28-201ENST00000253024 ST20-MTHFSA0A0A6YYL1 179 aa29.09■■■□□ 2.25
TRIM28-201ENST00000253024 DNMT1P26358 1616 aaKnown RBP29.08■■■□□ 2.25
TRIM28-201ENST00000253024 ANKRD50Q9ULJ7 1429 aa29.05■■■□□ 2.24
TRIM28-201ENST00000253024 ANKRD30AQ9BXX3 1397 aa29.04■■■□□ 2.24
TRIM28-201ENST00000253024 TMC1Q8TDI8 760 aa29.04■■■□□ 2.24
TRIM28-201ENST00000253024 SPATA31E1Q6ZUB1 1445 aa29.02■■■□□ 2.24
TRIM28-201ENST00000253024 PPP4R2Q9NY27 417 aa29.01■■■□□ 2.24
TRIM28-201ENST00000253024 CEP170Q5SW79 1584 aa29■■■□□ 2.23
TRIM28-201ENST00000253024 ZBED9Q6R2W3 1325 aa29■■■□□ 2.23
TRIM28-201ENST00000253024 KIAA1107Q9UPP5 1409 aa29■■■□□ 2.23
TRIM28-201ENST00000253024 CARMIL2Q6F5E8 1435 aa28.96■■■□□ 2.23
TRIM28-201ENST00000253024 ERICH6Q7L0X2 663 aa28.94■■■□□ 2.22
TRIM28-201ENST00000253024 NBPF1Q3BBV0 1214 aa28.92■■■□□ 2.22
TRIM28-201ENST00000253024 DHX29Q7Z478 1369 aaKnown RBP28.92■■■□□ 2.22
TRIM28-201ENST00000253024 C9orf84Q5VXU9 1444 aa28.91■■■□□ 2.22
TRIM28-201ENST00000253024 KIF15Q9NS87 1388 aa28.9■■■□□ 2.22
TRIM28-201ENST00000253024 SYNJ2O15056 1496 aa28.89■■■□□ 2.22
TRIM28-201ENST00000253024 BCORL1Q5H9F3 1711 aa28.88■■■□□ 2.21
TRIM28-201ENST00000253024 ATP10BO94823 1461 aa28.87■■■□□ 2.21
TRIM28-201ENST00000253024 CC2D1BQ5T0F9 858 aaKnown RBP28.86■■■□□ 2.21
TRIM28-201ENST00000253024 ROCK2O75116 1388 aaKnown RBP28.84■■■□□ 2.21
TRIM28-201ENST00000253024 CCDC136Q96JN2 1154 aa28.83■■■□□ 2.21
TRIM28-201ENST00000253024 MAGI1Q96QZ7 1491 aaPredicted RBP28.81■■■□□ 2.2
TRIM28-201ENST00000253024 PNISRQ8TF01 805 aaKnown RBP28.81■■■□□ 2.2
TRIM28-201ENST00000253024 NUDCQ9Y266 331 aa28.79■■■□□ 2.2
TRIM28-201ENST00000253024 PTPRGP23470 1445 aa28.78■■■□□ 2.2
TRIM28-201ENST00000253024 MBD5Q9P267 1494 aa28.73■■■□□ 2.19
TRIM28-201ENST00000253024 ITSN2Q9NZM3 1697 aa28.71■■■□□ 2.19
TRIM28-201ENST00000253024 CDCA7LQ96GN5 454 aa28.69■■■□□ 2.18
TRIM28-201ENST00000253024 MYT1LQ9UL68 1186 aa28.69■■■□□ 2.18
TRIM28-201ENST00000253024 NUP160Q12769 1436 aa28.68■■■□□ 2.18
TRIM28-201ENST00000253024 ADGRL2O95490 1459 aa28.67■■■□□ 2.18
TRIM28-201ENST00000253024 NBR1Q14596 966 aa28.66■■■□□ 2.18
TRIM28-201ENST00000253024 CDC42BPAQ5VT25 1732 aa28.66■■■□□ 2.18
TRIM28-201ENST00000253024 ABCC10Q5T3U5 1492 aa28.66■■■□□ 2.18
TRIM28-201ENST00000253024 PLIN1O60240 522 aa28.65■■■□□ 2.18
TRIM28-201ENST00000253024 ADGBQ8N7X0 1667 aa28.65■■■□□ 2.18
TRIM28-201ENST00000253024 KDM5CP41229 1560 aa28.65■■■□□ 2.18
TRIM28-201ENST00000253024 SKAP1Q86WV1 359 aa28.65■■■□□ 2.18
TRIM28-201ENST00000253024 NPM2Q86SE8 214 aaKnown RBP28.64■■■□□ 2.17
TRIM28-201ENST00000253024 CCDC144AA2RUR9 1427 aa28.63■■■□□ 2.17
TRIM28-201ENST00000253024 EXOC6Q8TAG9 804 aa28.62■■■□□ 2.17
TRIM28-201ENST00000253024 MYBBP1AQ9BQG0 1328 aaKnown RBP28.61■■■□□ 2.17
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms