RNA–Protein interactions for RNA: ENST00000221232.9

CNOT3-201, Transcript of CCR4-NOT transcription complex subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CNOT3, Length 2,852 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT3-201ENST00000221232 IFT140Q96RY7 1462 aa20.42■□□□□ 0.86
CNOT3-201ENST00000221232 PRG4Q92954 1404 aaPredicted RBP20.42■□□□□ 0.86
CNOT3-201ENST00000221232 NBPF8Q3BBV2 869 aa20.41■□□□□ 0.86
CNOT3-201ENST00000221232 NEFLP07196 543 aa20.41■□□□□ 0.86
CNOT3-201ENST00000221232 MIA2Q96PC5 1412 aa20.41■□□□□ 0.86
CNOT3-201ENST00000221232 DISP1Q96F81 1524 aa20.4■□□□□ 0.86
CNOT3-201ENST00000221232 KDM5BQ9UGL1 1544 aa20.4■□□□□ 0.86
CNOT3-201ENST00000221232 ERCC6Q03468 1493 aa20.4■□□□□ 0.86
CNOT3-201ENST00000221232 KIAA0586Q9BVV6 1533 aa20.39■□□□□ 0.86
CNOT3-201ENST00000221232 POLR3GLQ9BT43 218 aa20.39■□□□□ 0.85
CNOT3-201ENST00000221232 CCDC184Q52MB2 194 aa20.39■□□□□ 0.85
CNOT3-201ENST00000221232 ABCC5O15440 1437 aa20.38■□□□□ 0.85
CNOT3-201ENST00000221232 DAPK1P53355 1430 aa20.38■□□□□ 0.85
CNOT3-201ENST00000221232 NUP153P49790 1475 aaKnown RBP20.38■□□□□ 0.85
CNOT3-201ENST00000221232 IRX6P78412 446 aaPredicted RBP20.37■□□□□ 0.85
CNOT3-201ENST00000221232 JPH4Q96JJ6 628 aa20.36■□□□□ 0.85
CNOT3-201ENST00000221232 PLB1Q6P1J6 1458 aa20.35■□□□□ 0.85
CNOT3-201ENST00000221232 GRIN2AQ12879 1464 aa20.35■□□□□ 0.85
CNOT3-201ENST00000221232 FAM9BQ8IZU0 186 aa20.32■□□□□ 0.84
CNOT3-201ENST00000221232 ANKRD30BQ9BXX2 1392 aa20.31■□□□□ 0.84
CNOT3-201ENST00000221232 KIAA0556O60303 1618 aa20.31■□□□□ 0.84
CNOT3-201ENST00000221232 PKD2Q13563 968 aa20.28■□□□□ 0.84
CNOT3-201ENST00000221232 AKNAQ7Z591 1439 aa20.27■□□□□ 0.84
CNOT3-201ENST00000221232 GCC2Q8IWJ2 1684 aa20.27■□□□□ 0.84
CNOT3-201ENST00000221232 PLEKHD1A6NEE1 506 aa20.27■□□□□ 0.83
CNOT3-201ENST00000221232 EIF4G3O43432 1585 aaKnown RBP20.27■□□□□ 0.83
CNOT3-201ENST00000221232 SENP3-EIF4A1A0A087X0R7 540 aa20.26■□□□□ 0.83
CNOT3-201ENST00000221232 ROCK1Q13464 1354 aa20.25■□□□□ 0.83
CNOT3-201ENST00000221232 RAPGEF6Q8TEU7 1601 aa20.25■□□□□ 0.83
CNOT3-201ENST00000221232 TROQ12816 1431 aaPredicted RBP20.24■□□□□ 0.83
CNOT3-201ENST00000221232 MRS2Q9HD23 443 aa20.23■□□□□ 0.83
CNOT3-201ENST00000221232 CCDC7Q96M83 1385 aa20.23■□□□□ 0.83
CNOT3-201ENST00000221232 KDM2AQ9Y2K7 1162 aa20.22■□□□□ 0.83
CNOT3-201ENST00000221232 HNRNPMP52272 730 aaKnown RBP eCLIP20.21■□□□□ 0.835e-9■■■■■ 30.5
CNOT3-201ENST00000221232 PRKRIP1Q9H875 184 aaPredicted RBP20.21■□□□□ 0.83
CNOT3-201ENST00000221232 KIF7Q2M1P5 1343 aa20.21■□□□□ 0.83
CNOT3-201ENST00000221232 CAMSAP2Q08AD1 1489 aa20.2■□□□□ 0.82
CNOT3-201ENST00000221232 RPRD2Q5VT52 1461 aaKnown RBP20.2■□□□□ 0.82
CNOT3-201ENST00000221232 GPATCH8Q9UKJ3 1502 aaKnown RBP20.2■□□□□ 0.82
CNOT3-201ENST00000221232 NCOA1Q15788 1441 aa20.19■□□□□ 0.82
CNOT3-201ENST00000221232 CEP170Q5SW79 1584 aa20.19■□□□□ 0.82
CNOT3-201ENST00000221232 CARMIL2Q6F5E8 1435 aa20.18■□□□□ 0.82
CNOT3-201ENST00000221232 DNMT1P26358 1616 aaKnown RBP20.18■□□□□ 0.82
CNOT3-201ENST00000221232 CNTLNQ9NXG0 1405 aa20.18■□□□□ 0.82
CNOT3-201ENST00000221232 SYNJ2O15056 1496 aa20.17■□□□□ 0.82
CNOT3-201ENST00000221232 KIF14Q15058 1648 aa20.16■□□□□ 0.82
CNOT3-201ENST00000221232 TSPY4P0CV99 314 aa20.15■□□□□ 0.82
CNOT3-201ENST00000221232 TSPY10P0CW01 314 aa20.15■□□□□ 0.82
CNOT3-201ENST00000221232 NUP155O75694 1391 aa20.15■□□□□ 0.82
CNOT3-201ENST00000221232 PZPP20742 1482 aa20.14■□□□□ 0.81
CNOT3-201ENST00000221232 MAGI1Q96QZ7 1491 aaPredicted RBP20.14■□□□□ 0.81
CNOT3-201ENST00000221232 ANKRD30AQ9BXX3 1397 aa20.13■□□□□ 0.81
CNOT3-201ENST00000221232 TEX14Q8IWB6 1497 aa20.13■□□□□ 0.81
CNOT3-201ENST00000221232 ANKRD50Q9ULJ7 1429 aa20.1■□□□□ 0.81
CNOT3-201ENST00000221232 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.08■□□□□ 0.813e-9■■■□□ 16.4
CNOT3-201ENST00000221232 KIAA1107Q9UPP5 1409 aa20.08■□□□□ 0.8
CNOT3-201ENST00000221232 ATP10BO94823 1461 aa20.08■□□□□ 0.8
CNOT3-201ENST00000221232 DCAF11Q8TEB1 546 aa20.07■□□□□ 0.8
CNOT3-201ENST00000221232 CARD11Q9BXL7 1154 aa20.07■□□□□ 0.8
CNOT3-201ENST00000221232 RBM19Q9Y4C8 960 aaKnown RBP20.07■□□□□ 0.8
CNOT3-201ENST00000221232 SPATA31E1Q6ZUB1 1445 aa20.06■□□□□ 0.8
CNOT3-201ENST00000221232 USP47Q96K76 1375 aa20.06■□□□□ 0.8
CNOT3-201ENST00000221232 RGL3Q3MIN7 710 aa20.05■□□□□ 0.8
CNOT3-201ENST00000221232 NUP160Q12769 1436 aa20.04■□□□□ 0.8
CNOT3-201ENST00000221232 C9orf84Q5VXU9 1444 aa20.02■□□□□ 0.8
CNOT3-201ENST00000221232 PTPRGP23470 1445 aa20.02■□□□□ 0.8
CNOT3-201ENST00000221232 ST20-MTHFSA0A0A6YYL1 179 aa20.01■□□□□ 0.79
CNOT3-201ENST00000221232 BCL11AQ9H165 835 aa20■□□□□ 0.79
CNOT3-201ENST00000221232 KIF15Q9NS87 1388 aa19.99■□□□□ 0.79
CNOT3-201ENST00000221232 B4GALNT3Q6L9W6 998 aa19.97■□□□□ 0.79
CNOT3-201ENST00000221232 ITSN2Q9NZM3 1697 aa19.95■□□□□ 0.78
CNOT3-201ENST00000221232 ADGRL2O95490 1459 aa19.95■□□□□ 0.78
CNOT3-201ENST00000221232 PRKCSHP14314 528 aaPredicted RBP19.94■□□□□ 0.78
CNOT3-201ENST00000221232 ABCC10Q5T3U5 1492 aa19.94■□□□□ 0.78
CNOT3-201ENST00000221232 ZBED9Q6R2W3 1325 aa19.93■□□□□ 0.78
CNOT3-201ENST00000221232 TMC1Q8TDI8 760 aa19.93■□□□□ 0.78
CNOT3-201ENST00000221232 DHX29Q7Z478 1369 aaKnown RBP19.92■□□□□ 0.78
CNOT3-201ENST00000221232 SALL2Q9Y467 1007 aaPredicted RBP19.92■□□□□ 0.78
CNOT3-201ENST00000221232 ABCA8O94911 1581 aa19.92■□□□□ 0.78
CNOT3-201ENST00000221232 NBPF1Q3BBV0 1214 aa19.9■□□□□ 0.78
CNOT3-201ENST00000221232 ADGBQ8N7X0 1667 aa19.89■□□□□ 0.77
CNOT3-201ENST00000221232 MBD5Q9P267 1494 aa19.89■□□□□ 0.77
CNOT3-201ENST00000221232 CDC42BPAQ5VT25 1732 aa19.89■□□□□ 0.77
CNOT3-201ENST00000221232 BCORL1Q5H9F3 1711 aa19.88■□□□□ 0.77
CNOT3-201ENST00000221232 PPP4R2Q9NY27 417 aa19.88■□□□□ 0.77
CNOT3-201ENST00000221232 ANP32EQ9BTT0 268 aa19.88■□□□□ 0.77
CNOT3-201ENST00000221232 ADCY10Q96PN6 1610 aa19.88■□□□□ 0.77
CNOT3-201ENST00000221232 ROCK2O75116 1388 aaKnown RBP19.87■□□□□ 0.77
CNOT3-201ENST00000221232 CROCC2H7BZ55 1655 aa19.84■□□□□ 0.77
CNOT3-201ENST00000221232 PNISRQ8TF01 805 aaKnown RBP19.82■□□□□ 0.76
CNOT3-201ENST00000221232 CCDC141Q6ZP82 1450 aa19.79■□□□□ 0.76
CNOT3-201ENST00000221232 SHANK2Q9UPX8 1470 aa19.79■□□□□ 0.76
CNOT3-201ENST00000221232 KDM5CP41229 1560 aa19.78■□□□□ 0.76
CNOT3-201ENST00000221232 CCDC144AA2RUR9 1427 aa19.78■□□□□ 0.76
CNOT3-201ENST00000221232 ARHGAP5Q13017 1502 aa19.78■□□□□ 0.76
CNOT3-201ENST00000221232 UHRF1BP1Q6BDS2 1440 aa19.78■□□□□ 0.76
CNOT3-201ENST00000221232 CC2D1BQ5T0F9 858 aaKnown RBP19.77■□□□□ 0.76
CNOT3-201ENST00000221232 RSPH4AQ5TD94 716 aa19.77■□□□□ 0.76
CNOT3-201ENST00000221232 RALGAPBQ86X10 1494 aa19.77■□□□□ 0.76
CNOT3-201ENST00000221232 MSH5O43196 834 aa19.77■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms