RNA–Protein interactions for RNA: ENST00000221232.9

CNOT3-201, Transcript of CCR4-NOT transcription complex subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CNOT3, Length 2,852 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT3-201ENST00000221232 NISCHQ9Y2I1 1504 aa30.08■■■□□ 2.41
CNOT3-201ENST00000221232 SHROOM4Q9ULL8 1493 aa26.17■■□□□ 1.78
CNOT3-201ENST00000221232 SUPT5HO00267 1087 aaKnown RBP25.68■■□□□ 1.7
CNOT3-201ENST00000221232 DCAF8L2P0C7V8 631 aa25.66■■□□□ 1.7
CNOT3-201ENST00000221232 ZCCHC6Q5VYS8 1495 aaKnown RBP25.37■■□□□ 1.65
CNOT3-201ENST00000221232 CCDC180Q9P1Z9 1646 aa25.29■■□□□ 1.64
CNOT3-201ENST00000221232 CHIC1Q5VXU3 224 aa24.71■■□□□ 1.55
CNOT3-201ENST00000221232 MYO15BQ96JP2 1530 aa24.53■■□□□ 1.52
CNOT3-201ENST00000221232 DCAF1Q9Y4B6 1507 aa24.43■■□□□ 1.5
CNOT3-201ENST00000221232 LOC105371045A0A1W2PR82 267 aa24.21■■□□□ 1.47
CNOT3-201ENST00000221232 SCRIBQ14160 1630 aa24.11■■□□□ 1.45
CNOT3-201ENST00000221232 PCGF6Q9BYE7 350 aa24.1■■□□□ 1.45
CNOT3-201ENST00000221232 ABCC9O60706 1549 aa24.03■■□□□ 1.44
CNOT3-201ENST00000221232 RSF1Q96T23 1441 aaPredicted RBP23.91■■□□□ 1.42
CNOT3-201ENST00000221232 HRCP23327 699 aa23.85■■□□□ 1.41
CNOT3-201ENST00000221232 FAM9AQ8IZU1 332 aaPredicted RBP23.81■■□□□ 1.4
CNOT3-201ENST00000221232 EHMT2Q96KQ7 1210 aa23.81■■□□□ 1.4
CNOT3-201ENST00000221232 TRIM41Q8WV44 630 aa23.77■■□□□ 1.4
CNOT3-201ENST00000221232 CECR2Q9BXF3 1484 aa23.67■■□□□ 1.38
CNOT3-201ENST00000221232 PPARGC1BQ86YN6 1023 aaKnown RBP23.64■■□□□ 1.38
CNOT3-201ENST00000221232 RB1CC1Q8TDY2 1594 aa23.61■■□□□ 1.37
CNOT3-201ENST00000221232 NACADO15069 1562 aa23.55■■□□□ 1.36
CNOT3-201ENST00000221232 MROH2BQ7Z745 1585 aa23.49■■□□□ 1.35
CNOT3-201ENST00000221232 TRIM26Q12899 539 aaPredicted RBP23.43■■□□□ 1.34
CNOT3-201ENST00000221232 WIZO95785 1651 aa23.34■■□□□ 1.33
CNOT3-201ENST00000221232 PABPN1Q86U42 306 aaKnown RBP eCLIP23.2■■□□□ 1.3
CNOT3-201ENST00000221232 BAZ1AQ9NRL2 1556 aaPredicted RBP23.06■■□□□ 1.28
CNOT3-201ENST00000221232 TTBK1Q5TCY1 1321 aaPredicted RBP22.97■■□□□ 1.27
CNOT3-201ENST00000221232 CCDC88BA6NC98 1476 aa22.92■■□□□ 1.26
CNOT3-201ENST00000221232 ABCC8Q09428 1581 aa22.91■■□□□ 1.26
CNOT3-201ENST00000221232 SMARCA4P51532 1647 aa22.86■■□□□ 1.25
CNOT3-201ENST00000221232 TOP2AP11388 1531 aaKnown RBP22.83■■□□□ 1.25
CNOT3-201ENST00000221232 UNC13AQ9UPW8 1703 aa22.8■■□□□ 1.24
CNOT3-201ENST00000221232 ZEB1P37275 1124 aaPredicted RBP22.78■■□□□ 1.24
CNOT3-201ENST00000221232 SMARCA2P51531 1590 aa22.75■■□□□ 1.23
CNOT3-201ENST00000221232 SOGA1O94964 1423 aa22.75■■□□□ 1.23
CNOT3-201ENST00000221232 EIF4G1Q04637 1599 aaKnown RBP22.75■■□□□ 1.23
CNOT3-201ENST00000221232 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.73■■□□□ 1.23
CNOT3-201ENST00000221232 UBTFP17480 764 aaKnown RBP22.73■■□□□ 1.23
CNOT3-201ENST00000221232 RUSC2Q8N2Y8 1516 aa22.66■■□□□ 1.22
CNOT3-201ENST00000221232 CSRNP3Q8WYN3 585 aa22.65■■□□□ 1.22
CNOT3-201ENST00000221232 BICRAQ9NZM4 1560 aa22.62■■□□□ 1.21
CNOT3-201ENST00000221232 CCER1Q8TC90 406 aaPredicted RBP22.61■■□□□ 1.21
CNOT3-201ENST00000221232 RANGAP1P46060 587 aaPredicted RBP22.55■■□□□ 1.2
CNOT3-201ENST00000221232 CEP162Q5TB80 1403 aa22.55■■□□□ 1.2
CNOT3-201ENST00000221232 WRNQ14191 1432 aaPredicted RBP eCLIP22.47■■□□□ 1.19
CNOT3-201ENST00000221232 TNIKQ9UKE5 1360 aa22.44■■□□□ 1.18
CNOT3-201ENST00000221232 ATAD2BQ9ULI0 1458 aa22.4■■□□□ 1.18
CNOT3-201ENST00000221232 BAZ1BQ9UIG0 1483 aaKnown RBP22.36■■□□□ 1.17
CNOT3-201ENST00000221232 EEA1Q15075 1411 aa22.33■■□□□ 1.16
CNOT3-201ENST00000221232 GOLGA3Q08378 1498 aa22.3■■□□□ 1.16
CNOT3-201ENST00000221232 SYNJ1O43426 1573 aa22.29■■□□□ 1.16
CNOT3-201ENST00000221232 PEG3Q9GZU2 1588 aa22.27■■□□□ 1.15
CNOT3-201ENST00000221232 HNRNPUL2Q1KMD3 747 aaKnown RBP22.26■■□□□ 1.15
CNOT3-201ENST00000221232 CEP164Q9UPV0 1460 aa22.15■■□□□ 1.14
CNOT3-201ENST00000221232 CLIP1P30622 1438 aa22.15■■□□□ 1.14
CNOT3-201ENST00000221232 APLP2Q06481 763 aa22.15■■□□□ 1.14
CNOT3-201ENST00000221232 RAPGEF2Q9Y4G8 1499 aa22.13■■□□□ 1.13
CNOT3-201ENST00000221232 DIEXFQ68CQ4 756 aaKnown RBP22.07■■□□□ 1.12
CNOT3-201ENST00000221232 SCAF1Q9H7N4 1312 aaKnown RBP22.04■■□□□ 1.12
CNOT3-201ENST00000221232 KIF21BO75037 1637 aa21.97■■□□□ 1.11
CNOT3-201ENST00000221232 VPS8Q8N3P4 1428 aa21.96■■□□□ 1.11
CNOT3-201ENST00000221232 TOP2BQ02880 1626 aa21.91■■□□□ 1.1
CNOT3-201ENST00000221232 NCAPD3P42695 1498 aa21.9■■□□□ 1.1
CNOT3-201ENST00000221232 NEUROD1Q13562 356 aa21.87■■□□□ 1.09
CNOT3-201ENST00000221232 KANK4Q5T7N3 995 aaPredicted RBP21.86■■□□□ 1.09
CNOT3-201ENST00000221232 ZNF316A6NFI3 1004 aaPredicted RBP21.86■■□□□ 1.09
CNOT3-201ENST00000221232 CUX1P39880 1505 aa21.83■■□□□ 1.09
CNOT3-201ENST00000221232 ACIN1Q9UKV3 1341 aaKnown RBP21.79■■□□□ 1.08
CNOT3-201ENST00000221232 ITGAEP38570 1179 aa21.78■■□□□ 1.08
CNOT3-201ENST00000221232 PRXQ9BXM0 1461 aa21.77■■□□□ 1.08
CNOT3-201ENST00000221232 YTHDC1Q96MU7 727 aaKnown RBP21.77■■□□□ 1.08
CNOT3-201ENST00000221232 KIF27Q86VH2 1401 aa21.77■■□□□ 1.08
CNOT3-201ENST00000221232 HMGXB3Q12766 1538 aa21.75■■□□□ 1.07
CNOT3-201ENST00000221232 BIVM-ERCC5R4GMW8 1640 aa21.74■■□□□ 1.07
CNOT3-201ENST00000221232 CFTRP13569 1480 aa21.74■■□□□ 1.07
CNOT3-201ENST00000221232 ARAP1Q96P48 1450 aa21.71■■□□□ 1.07
CNOT3-201ENST00000221232 P3H3Q8IVL6 736 aa21.67■■□□□ 1.06
CNOT3-201ENST00000221232 CENPBP07199 599 aaPredicted RBP21.66■■□□□ 1.06
CNOT3-201ENST00000221232 MIER1Q8N108 512 aa21.66■■□□□ 1.06
CNOT3-201ENST00000221232 ATP1B4Q9UN42 357 aaPredicted RBP21.66■■□□□ 1.06
CNOT3-201ENST00000221232 GTF3C3Q9Y5Q9 886 aa21.65■■□□□ 1.06
CNOT3-201ENST00000221232 CUX2O14529 1486 aa21.65■■□□□ 1.06
CNOT3-201ENST00000221232 ERICH3Q5RHP9 1530 aa21.63■■□□□ 1.05
CNOT3-201ENST00000221232 IGF1RP08069 1367 aa21.61■■□□□ 1.05
CNOT3-201ENST00000221232 CADPSQ9ULU8 1353 aa21.61■■□□□ 1.05
CNOT3-201ENST00000221232 ARHGAP35Q9NRY4 1499 aa21.56■■□□□ 1.04
CNOT3-201ENST00000221232 CARMIL1Q5VZK9 1371 aa21.53■■□□□ 1.04
CNOT3-201ENST00000221232 DHX57Q6P158 1386 aaKnown RBP21.51■■□□□ 1.03
CNOT3-201ENST00000221232 FGD5Q6ZNL6 1462 aa21.5■■□□□ 1.03
CNOT3-201ENST00000221232 CCNB3Q8WWL7 1395 aa21.45■■□□□ 1.02
CNOT3-201ENST00000221232 FAM50AQ14320 339 aaKnown RBP21.44■■□□□ 1.02
CNOT3-201ENST00000221232 CC2D2AQ9P2K1 1620 aa21.42■■□□□ 1.02
CNOT3-201ENST00000221232 RAD54L2Q9Y4B4 1467 aa21.41■■□□□ 1.02
CNOT3-201ENST00000221232 PELP1Q8IZL8 1130 aaKnown RBP21.4■■□□□ 1.02
CNOT3-201ENST00000221232 FANCD2Q9BXW9 1451 aa21.39■■□□□ 1.02
CNOT3-201ENST00000221232 RRBP1Q9P2E9 1410 aaKnown RBP21.39■■□□□ 1.01
CNOT3-201ENST00000221232 NESP48681 1621 aa21.39■■□□□ 1.01
CNOT3-201ENST00000221232 DNAJC5BQ9UF47 199 aa21.35■■□□□ 1.01
CNOT3-201ENST00000221232 CLSPNQ9HAW4 1339 aa21.31■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms