RNA–Protein interactions for RNA: YDR312W

SSF2, Transcript of Protein required for ribosomal large subunit maturation, yeast

Gene SSF2, Length 1,362 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SSF2	YDR312W	YER130C	P39959	443 aa		2.75	□□□□□ -1.97
SSF2	YDR312W	YJL070C	P40361	888 aa		2.75	□□□□□ -1.97
SSF2	YDR312W	YIR014W	P40570	242 aa		2.75	□□□□□ -1.97
SSF2	YDR312W	GUF1	P46943	645 aa		2.75	□□□□□ -1.97
SSF2	YDR312W	VPS72	Q03388	795 aa		2.75	□□□□□ -1.97
SSF2	YDR312W	BUD22	Q04347	519 aa	Known RBP	2.75	□□□□□ -1.97
SSF2	YDR312W	LUC7	Q07508	261 aa	Predicted RBP	2.75	□□□□□ -1.97
SSF2	YDR312W	SLM3	Q12093	417 aa		2.75	□□□□□ -1.97
SSF2	YDR312W	HUA2	Q12134	243 aa		2.75	□□□□□ -1.97
SSF2	YDR312W	TIP41	Q12199	356 aa		2.75	□□□□□ -1.97
SSF2	YDR312W	CSR2	Q12734	1121 aa		2.75	□□□□□ -1.97
SSF2	YDR312W	SEM1	O94742	89 aa		2.74	□□□□□ -1.97
SSF2	YDR312W	MF(ALPHA)1	P01149	165 aa		2.74	□□□□□ -1.97
SSF2	YDR312W	SGV1	P23293	657 aa	Known RBP	2.74	□□□□□ -1.97
SSF2	YDR312W	BUD5	P25300	642 aa	Predicted RBP	2.74	□□□□□ -1.97
SSF2	YDR312W	GFD2	P25370	566 aa	Known RBP	2.74	□□□□□ -1.97
SSF2	YDR312W	IMG1	P25626	169 aa		2.74	□□□□□ -1.97
SSF2	YDR312W	YIH1	P25637	258 aa		2.74	□□□□□ -1.97
SSF2	YDR312W	CMK1	P27466	446 aa	Known RBP	2.74	□□□□□ -1.97
SSF2	YDR312W	SSE2	P32590	693 aa	Known RBP	2.74	□□□□□ -1.97
SSF2	YDR312W	TRS65	P32893	560 aa		2.74	□□□□□ -1.97
SSF2	YDR312W	YBR144C	P34215	104 aa		2.74	□□□□□ -1.97
SSF2	YDR312W	YBL055C	P34220	418 aa	Predicted RBP	2.74	□□□□□ -1.97
SSF2	YDR312W	YKL100C	P34248	587 aa		2.74	□□□□□ -1.97
SSF2	YDR312W	UBP11	P36026	717 aa		2.74	□□□□□ -1.97
SSF2	YDR312W	SPC34	P36131	295 aa		2.74	□□□□□ -1.97
SSF2	YDR312W	CCT6	P39079	546 aa		2.74	□□□□□ -1.97
SSF2	YDR312W	NOP16	P40007	231 aa	Known RBP	2.74	□□□□□ -1.97
SSF2	YDR312W	PTR3	P43606	678 aa		2.74	□□□□□ -1.97
SSF2	YDR312W	CRZ1	P53968	678 aa		2.74	□□□□□ -1.97
SSF2	YDR312W	YVH1	Q02256	364 aa	Known RBP	2.74	□□□□□ -1.97
SSF2	YDR312W	MSC1	Q03104	513 aa		2.74	□□□□□ -1.97
SSF2	YDR312W	NOP58	Q12499	511 aa	Known RBP	2.74	□□□□□ -1.97
SSF2	YDR312W	YRF1-4	O13559	1382 aa		2.74	□□□□□ -1.97
SSF2	YDR312W	MHP1	P43638	1398 aa		2.74	□□□□□ -1.97
SSF2	YDR312W	ACH1	P32316	526 aa		2.74	□□□□□ -1.97
SSF2	YDR312W	ERG1	P32476	496 aa	Known RBP	2.74	□□□□□ -1.97
SSF2	YDR312W	SAC6	P32599	642 aa	Known RBP	2.74	□□□□□ -1.97
SSF2	YDR312W	ICS2	P38284	255 aa		2.74	□□□□□ -1.97
SSF2	YDR312W	AFG3	P39925	761 aa		2.74	□□□□□ -1.97
SSF2	YDR312W	AXL1	P40851	1208 aa		2.74	□□□□□ -1.97
SSF2	YDR312W	APT1	P49435	187 aa	Known RBP	2.74	□□□□□ -1.97
SSF2	YDR312W	DSD1	P53095	428 aa		2.74	□□□□□ -1.97
SSF2	YDR312W	YGR127W	P53275	312 aa		2.74	□□□□□ -1.97
SSF2	YDR312W	SMM1	P53720	384 aa	Known RBP	2.74	□□□□□ -1.97
SSF2	YDR312W	YPL014W	Q02606	381 aa		2.74	□□□□□ -1.97
SSF2	YDR312W	DIC1	Q06143	298 aa		2.74	□□□□□ -1.97
SSF2	YDR312W	SSK1	Q07084	712 aa		2.74	□□□□□ -1.97
SSF2	YDR312W	YDL121C	Q07541	149 aa		2.74	□□□□□ -1.97
SSF2	YDR312W	FMP45	Q07651	309 aa		2.74	□□□□□ -1.97
SSF2	YDR312W	ETT1	Q08421	412 aa	Known RBP	2.74	□□□□□ -1.97
SSF2	YDR312W	NMD4	Q12129	218 aa		2.74	□□□□□ -1.97
SSF2	YDR312W	BUG1	Q12191	341 aa		2.74	□□□□□ -1.97
SSF2	YDR312W	PDH1	Q12428	516 aa	Known RBP	2.74	□□□□□ -1.97
SSF2	YDR312W	YML002W	P0CF17	737 aa		2.73	□□□□□ -1.97
SSF2	YDR312W	MRP13	P12686	339 aa		2.73	□□□□□ -1.97
SSF2	YDR312W	PMS1	P14242	873 aa		2.73	□□□□□ -1.97
SSF2	YDR312W	EST1	P17214	699 aa	Predicted RBP	2.73	□□□□□ -1.97
SSF2	YDR312W	BOS1	P25385	244 aa		2.73	□□□□□ -1.97
SSF2	YDR312W	SNC1	P31109	117 aa		2.73	□□□□□ -1.97
SSF2	YDR312W	TIF3	P34167	436 aa	Known RBP	2.73	□□□□□ -1.97
SSF2	YDR312W	MIC60	P36112	540 aa		2.73	□□□□□ -1.97
SSF2	YDR312W	RPL32	P38061	130 aa	Known RBP	2.73	□□□□□ -1.97
SSF2	YDR312W	RIM2	P38127	377 aa		2.73	□□□□□ -1.97
SSF2	YDR312W	LAG1	P38703	411 aa		2.73	□□□□□ -1.97
SSF2	YDR312W	FLC2	P39719	783 aa		2.73	□□□□□ -1.97
SSF2	YDR312W	TMA108	P40462	946 aa		2.73	□□□□□ -1.97
SSF2	YDR312W	FAR3	P46671	204 aa		2.73	□□□□□ -1.97
SSF2	YDR312W	DUG3	P53871	357 aa		2.73	□□□□□ -1.97
SSF2	YDR312W	TDA7	P53882	636 aa	Predicted RBP	2.73	□□□□□ -1.97
SSF2	YDR312W	YMR160W	Q03823	816 aa		2.73	□□□□□ -1.97
SSF2	YDR312W	MSS11	Q03825	758 aa		2.73	□□□□□ -1.97
SSF2	YDR312W	RPC11	Q04307	110 aa	Predicted RBP	2.73	□□□□□ -1.97
SSF2	YDR312W	RBA50	Q04418	439 aa		2.73	□□□□□ -1.97
SSF2	YDR312W	YEH1	Q07804	573 aa		2.73	□□□□□ -1.97
SSF2	YDR312W	FMP40	Q08968	688 aa	Predicted RBP	2.73	□□□□□ -1.97
SSF2	YDR312W	SEC53	P07283	254 aa	Known RBP	2.72	□□□□□ -1.97
SSF2	YDR312W	TYR1	P20049	452 aa		2.72	□□□□□ -1.97
SSF2	YDR312W	SWE1	P32944	819 aa		2.72	□□□□□ -1.97
SSF2	YDR312W	SGN1	P40561	250 aa	Known RBP RIP-Chip data	2.72	□□□□□ -1.97	not detected
SSF2	YDR312W	MRX6	P48564	524 aa		2.72	□□□□□ -1.97
SSF2	YDR312W	BUD32	P53323	261 aa		2.72	□□□□□ -1.97
SSF2	YDR312W	YMR087W	Q04299	284 aa		2.72	□□□□□ -1.97
SSF2	YDR312W	DAP1	Q12091	152 aa		2.72	□□□□□ -1.97
SSF2	YDR312W	NCE102	Q12207	173 aa	RIP-Chip data	2.72	□□□□□ -1.97	not detected
SSF2	YDR312W	ARP6	Q12509	438 aa		2.72	□□□□□ -1.97
SSF2	YDR312W	YPT6	Q99260	215 aa		2.72	□□□□□ -1.97
SSF2	YDR312W	URB1	P34241	1764 aa	Known RBP	2.71	□□□□□ -1.98
SSF2	YDR312W	MRS3	P10566	314 aa		2.71	□□□□□ -1.98
SSF2	YDR312W	ART10	P18634	518 aa	Known RBP	2.71	□□□□□ -1.98
SSF2	YDR312W	OLE1	P21147	510 aa	Known RBP	2.71	□□□□□ -1.98
SSF2	YDR312W	SGF29	P25554	259 aa		2.71	□□□□□ -1.98
SSF2	YDR312W	DHH1	P39517	506 aa	Known RBP	2.71	□□□□□ -1.98
SSF2	YDR312W	YJL068C	P40363	299 aa		2.71	□□□□□ -1.98
SSF2	YDR312W	YIL089W	P40500	205 aa		2.71	□□□□□ -1.98
SSF2	YDR312W	SNG1	P46950	547 aa		2.71	□□□□□ -1.98
SSF2	YDR312W	DRN1	P53255	507 aa	Known RBP	2.71	□□□□□ -1.98
SSF2	YDR312W	IPI3	P53877	555 aa		2.71	□□□□□ -1.98
SSF2	YDR312W	RHO4	Q00246	291 aa		2.71	□□□□□ -1.98
SSF2	YDR312W	YDL057W	Q07379	328 aa		2.71	□□□□□ -1.98

Retrieved 100 of 5,963 RNA–protein pairs in 72.3 ms