RNA–Protein interactions for RNA: YPR110C

RPC40, Transcript of RNA polymerase subunit AC40, yeast

Gene RPC40, Length 1,008 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RPC40	YPR110C	MRE11	P32829	692 aa		3.2	□□□□□ -1.9
RPC40	YPR110C	SEF1	P34228	1148 aa		3.2	□□□□□ -1.9
RPC40	YPR110C	TCD2	P36101	447 aa	Known RBP	3.2	□□□□□ -1.9
RPC40	YPR110C	SRO77	P38163	1010 aa		3.2	□□□□□ -1.9
RPC40	YPR110C	CST26	P38226	397 aa		3.2	□□□□□ -1.9
RPC40	YPR110C	DBP8	P38719	431 aa		3.2	□□□□□ -1.9
RPC40	YPR110C	UBA4	P38820	440 aa		3.2	□□□□□ -1.9
RPC40	YPR110C	PHO90	P39535	881 aa		3.2	□□□□□ -1.9
RPC40	YPR110C	SGN1	P40561	250 aa	Known RBP RIP-Chip data	3.2	□□□□□ -1.9	not detected
RPC40	YPR110C	HXT9	P40885	567 aa		3.2	□□□□□ -1.9
RPC40	YPR110C	HOS2	P53096	452 aa	Predicted RBP	3.2	□□□□□ -1.9
RPC40	YPR110C	YNL144C	P53907	740 aa		3.2	□□□□□ -1.9
RPC40	YPR110C	LGE1	Q02796	332 aa	Known RBP	3.2	□□□□□ -1.9
RPC40	YPR110C	MSC1	Q03104	513 aa		3.2	□□□□□ -1.9
RPC40	YPR110C	ECM22	Q05958	814 aa	Predicted RBP	3.2	□□□□□ -1.9
RPC40	YPR110C	TEN1	Q07921	160 aa		3.2	□□□□□ -1.9
RPC40	YPR110C	RPS10A	Q08745	105 aa	Predicted RBP	3.2	□□□□□ -1.9
RPC40	YPR110C	MRP13	P12686	339 aa		3.19	□□□□□ -1.9
RPC40	YPR110C	RED1	P14291	827 aa		3.19	□□□□□ -1.9
RPC40	YPR110C	ART10	P18634	518 aa	Known RBP	3.19	□□□□□ -1.9
RPC40	YPR110C	AIM17	P23180	465 aa	Known RBP	3.19	□□□□□ -1.9
RPC40	YPR110C	WBP1	P33767	430 aa	Known RBP	3.19	□□□□□ -1.9
RPC40	YPR110C	RKM3	P38222	552 aa		3.19	□□□□□ -1.9
RPC40	YPR110C	MUM2	P38236	366 aa		3.19	□□□□□ -1.9
RPC40	YPR110C	VID24	P38263	362 aa		3.19	□□□□□ -1.9
RPC40	YPR110C	ALG5	P40350	334 aa		3.19	□□□□□ -1.9
RPC40	YPR110C	XBP1	P40489	647 aa		3.19	□□□□□ -1.9
RPC40	YPR110C	PTR3	P43606	678 aa		3.19	□□□□□ -1.9
RPC40	YPR110C	RPS10B	P46784	105 aa	Known RBP	3.19	□□□□□ -1.9
RPC40	YPR110C	PYK2	P52489	506 aa	Known RBP	3.19	□□□□□ -1.9
RPC40	YPR110C	RPL15B	P54780	204 aa	Predicted RBP	3.19	□□□□□ -1.9
RPC40	YPR110C	YML122C	Q03207	126 aa		3.19	□□□□□ -1.9
RPC40	YPR110C	SYF1	Q04048	859 aa	Predicted RBP	3.19	□□□□□ -1.9
RPC40	YPR110C	RPC11	Q04307	110 aa	Predicted RBP	3.19	□□□□□ -1.9
RPC40	YPR110C	MCP2	Q06567	569 aa		3.19	□□□□□ -1.9
RPC40	YPR110C	SEC39	Q12745	709 aa		3.19	□□□□□ -1.9
RPC40	YPR110C	SPT6	P23615	1451 aa	Known RBP	3.19	□□□□□ -1.9
RPC40	YPR110C	GAL80	P04387	435 aa		3.18	□□□□□ -1.9
RPC40	YPR110C	PMS1	P14242	873 aa		3.18	□□□□□ -1.9
RPC40	YPR110C	PDA1	P16387	420 aa	Known RBP	3.18	□□□□□ -1.9
RPC40	YPR110C	EST1	P17214	699 aa	Predicted RBP	3.18	□□□□□ -1.9
RPC40	YPR110C	RPB8	P20436	146 aa		3.18	□□□□□ -1.9
RPC40	YPR110C	NFU1	P32860	256 aa		3.18	□□□□□ -1.9
RPC40	YPR110C	SEC66	P33754	206 aa		3.18	□□□□□ -1.9
RPC40	YPR110C	YKL100C	P34248	587 aa		3.18	□□□□□ -1.9
RPC40	YPR110C	UBP11	P36026	717 aa		3.18	□□□□□ -1.9
RPC40	YPR110C	RPL32	P38061	130 aa	Known RBP	3.18	□□□□□ -1.9
RPC40	YPR110C	ICS2	P38284	255 aa		3.18	□□□□□ -1.9
RPC40	YPR110C	RFC1	P38630	861 aa	Known RBP	3.18	□□□□□ -1.9
RPC40	YPR110C	ANS1	P38832	159 aa		3.18	□□□□□ -1.9
RPC40	YPR110C	CIN4	P39110	191 aa		3.18	□□□□□ -1.9
RPC40	YPR110C	AFG3	P39925	761 aa		3.18	□□□□□ -1.9
RPC40	YPR110C	YIL060W	P40519	144 aa		3.18	□□□□□ -1.9
RPC40	YPR110C	NET1	P47035	1189 aa		3.18	□□□□□ -1.9
RPC40	YPR110C	VPS25	P47142	202 aa		3.18	□□□□□ -1.9
RPC40	YPR110C	YPT11	P48559	417 aa		3.18	□□□□□ -1.9
RPC40	YPR110C	IMD4	P50094	524 aa	Known RBP	3.18	□□□□□ -1.9
RPC40	YPR110C	ECI1	Q05871	280 aa		3.18	□□□□□ -1.9
RPC40	YPR110C	ECM30	Q06673	1274 aa		3.18	□□□□□ -1.9
RPC40	YPR110C	SPA2	P23201	1466 aa	Known RBP	3.17	□□□□□ -1.9
RPC40	YPR110C	YPR089W	O13585	888 aa		3.17	□□□□□ -1.9
RPC40	YPR110C	SNF3	P10870	884 aa		3.17	□□□□□ -1.9
RPC40	YPR110C	PTP1	P25044	335 aa		3.17	□□□□□ -1.9
RPC40	YPR110C	SMF1	P38925	575 aa		3.17	□□□□□ -1.9
RPC40	YPR110C	YMR124W	P39523	943 aa	Known RBP	3.17	□□□□□ -1.9
RPC40	YPR110C	PCL6	P40038	420 aa		3.17	□□□□□ -1.9
RPC40	YPR110C	LSM5	P40089	93 aa	Known RBP	3.17	□□□□□ -1.9
RPC40	YPR110C	VTC2	P43585	828 aa		3.17	□□□□□ -1.9
RPC40	YPR110C	PET130	P47065	347 aa		3.17	□□□□□ -1.9
RPC40	YPR110C	SGF73	P53165	657 aa		3.17	□□□□□ -1.9
RPC40	YPR110C	TWF1	P53250	332 aa		3.17	□□□□□ -1.9
RPC40	YPR110C	IPI3	P53877	555 aa		3.17	□□□□□ -1.9
RPC40	YPR110C	RSM23	Q01163	450 aa		3.17	□□□□□ -1.9
RPC40	YPR110C	CTL1	Q03220	320 aa	Known RBP	3.17	□□□□□ -1.9
RPC40	YPR110C	GIR2	Q03768	265 aa	Predicted RBP	3.17	□□□□□ -1.9
RPC40	YPR110C	MRPL1	Q04599	285 aa		3.17	□□□□□ -1.9
RPC40	YPR110C	RQC1	Q05468	723 aa	Known RBP	3.17	□□□□□ -1.9
RPC40	YPR110C	MRD1	Q06106	887 aa	Known RBP	3.17	□□□□□ -1.9
RPC40	YPR110C	CDC45	Q08032	650 aa		3.17	□□□□□ -1.9
RPC40	YPR110C	GSH2	Q08220	491 aa		3.17	□□□□□ -1.9
RPC40	YPR110C	RIM20	Q12033	661 aa		3.17	□□□□□ -1.9
RPC40	YPR110C	ATG29	Q12092	213 aa		3.17	□□□□□ -1.9
RPC40	YPR110C	YLR112W	Q12130	139 aa		3.17	□□□□□ -1.9
RPC40	YPR110C	NCE102	Q12207	173 aa	RIP-Chip data	3.17	□□□□□ -1.9	not detected
RPC40	YPR110C	RLM1	Q12224	676 aa		3.17	□□□□□ -1.9
RPC40	YPR110C	RTN2	Q12443	393 aa		3.17	□□□□□ -1.9
RPC40	YPR110C	MDM10	P18409	493 aa		3.16	□□□□□ -1.9
RPC40	YPR110C	YCP4	P25349	247 aa	Known RBP	3.16	□□□□□ -1.9
RPC40	YPR110C	ELO2	P25358	347 aa		3.16	□□□□□ -1.9
RPC40	YPR110C	CMC1	P36064	111 aa		3.16	□□□□□ -1.9
RPC40	YPR110C	MSR1	P38714	643 aa		3.16	□□□□□ -1.9
RPC40	YPR110C	SPC97	P38863	823 aa		3.16	□□□□□ -1.9
RPC40	YPR110C	FLO5	P38894	1075 aa		3.16	□□□□□ -1.9
RPC40	YPR110C	PCI8	P40512	444 aa		3.16	□□□□□ -1.9
RPC40	YPR110C	MAF1	P41910	395 aa		3.16	□□□□□ -1.9
RPC40	YPR110C	SOL4	P53315	255 aa		3.16	□□□□□ -1.9
RPC40	YPR110C	YGR250C	P53316	781 aa	Known RBP	3.16	□□□□□ -1.9
RPC40	YPR110C	STP1	Q00947	519 aa		3.16	□□□□□ -1.9
RPC40	YPR110C	YDR239C	Q03780	787 aa		3.16	□□□□□ -1.9
RPC40	YPR110C	FUR1	P18562	216 aa	Known RBP	3.15	□□□□□ -1.91

Retrieved 100 of 5,963 RNA–protein pairs in 101.6 ms