RNA–Protein interactions for RNA: YPR110C

RPC40, Transcript of RNA polymerase subunit AC40, yeastyeast

Gene RPC40, Length 1,008 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RPC40YPR110C MTC1P47018 478 aaKnown RBP10.39□□□□□ -0.75
RPC40YPR110C FAP1P53971 965 aa9.66□□□□□ -0.86
RPC40YPR110C DRS1P32892 752 aaKnown RBP9.5□□□□□ -0.89
RPC40YPR110C PRY3P47033 881 aa9.12□□□□□ -0.95
RPC40YPR110C PRI1P10363 409 aa8.9□□□□□ -0.98
RPC40YPR110C AAD16Q02895 342 aa8.86□□□□□ -0.99
RPC40YPR110C YCK3P39962 524 aa8.69□□□□□ -1.02
RPC40YPR110C RPG1P38249 964 aaKnown RBP8.61□□□□□ -1.03
RPC40YPR110C ISW2Q08773 1120 aa8.61□□□□□ -1.03
RPC40YPR110C TSR3Q12094 313 aaKnown RBP8.47□□□□□ -1.05
RPC40YPR110C HAA1Q12753 694 aaKnown RBP8.44□□□□□ -1.06
RPC40YPR110C DIP2Q12220 943 aaPredicted RBP8.38□□□□□ -1.07
RPC40YPR110C BFR2Q06631 534 aaKnown RBP8.29□□□□□ -1.08
RPC40YPR110C RSE1Q04693 1361 aaKnown RBP8.15□□□□□ -1.1
RPC40YPR110C AVT3P36062 692 aa8.04□□□□□ -1.12
RPC40YPR110C MRPL32P25348 183 aa8.03□□□□□ -1.12
RPC40YPR110C TFA1P36100 482 aa7.98□□□□□ -1.13
RPC40YPR110C RPL17AP05740 184 aaKnown RBP7.96□□□□□ -1.14
RPC40YPR110C RPL17BP46990 184 aaKnown RBP7.96□□□□□ -1.14
RPC40YPR110C REB1P21538 810 aa7.91□□□□□ -1.14
RPC40YPR110C YGL015CP33199 130 aa7.74□□□□□ -1.17
RPC40YPR110C CDC27P38042 758 aa7.7□□□□□ -1.18
RPC40YPR110C SPT21P35209 758 aa7.6□□□□□ -1.19
RPC40YPR110C YKR023WP36119 530 aaKnown RBP7.59□□□□□ -1.19
RPC40YPR110C DCD1P06773 312 aa7.48□□□□□ -1.21
RPC40YPR110C HOP09932 586 aa7.46□□□□□ -1.22
RPC40YPR110C MAP2P38174 421 aaKnown RBP7.46□□□□□ -1.22
RPC40YPR110C TFC8Q12308 588 aa7.4□□□□□ -1.22
RPC40YPR110C UBP10P53874 792 aaPredicted RBP7.38□□□□□ -1.23
RPC40YPR110C SCY1P53009 804 aa7.26□□□□□ -1.25
RPC40YPR110C BUD31P25337 157 aaPredicted RBP7.25□□□□□ -1.25
RPC40YPR110C RIM101P33400 625 aa7.24□□□□□ -1.25
RPC40YPR110C BCH2P36122 765 aa7.17□□□□□ -1.26
RPC40YPR110C SLX5P32828 619 aaKnown RBP7.12□□□□□ -1.27
RPC40YPR110C OXP1P28273 1286 aa7.05□□□□□ -1.28
RPC40YPR110C TIF4632P39936 914 aaKnown RBP7.05□□□□□ -1.28
RPC40YPR110C TGL3P40308 642 aa7.04□□□□□ -1.28
RPC40YPR110C EPS1P40557 701 aa6.97□□□□□ -1.29
RPC40YPR110C BDF1P35817 686 aa6.94□□□□□ -1.3
RPC40YPR110C RQC2Q12532 1038 aaKnown RBP6.91□□□□□ -1.3
RPC40YPR110C PTP3P40048 928 aa6.9□□□□□ -1.3
RPC40YPR110C SIS1P25294 352 aaKnown RBP6.87□□□□□ -1.31
RPC40YPR110C UBP9P39967 754 aa6.86□□□□□ -1.31
RPC40YPR110C YIL055CP40523 627 aaKnown RBP6.85□□□□□ -1.31
RPC40YPR110C YAH1Q12184 172 aaKnown RBP6.82□□□□□ -1.32
RPC40YPR110C RSM7P47150 247 aa6.78□□□□□ -1.32
RPC40YPR110C AI2P03876 854 aa6.76□□□□□ -1.33
RPC40YPR110C YBL029C-AQ3E756 94 aa6.75□□□□□ -1.33
RPC40YPR110C MST1P07236 462 aa6.73□□□□□ -1.33
RPC40YPR110C SSP1P38871 571 aa6.73□□□□□ -1.33
RPC40YPR110C BBC1P47068 1157 aa6.71□□□□□ -1.34
RPC40YPR110C YOR238WQ08634 303 aa6.69□□□□□ -1.34
RPC40YPR110C YLR271WQ06152 274 aa6.67□□□□□ -1.34
RPC40YPR110C NSR1P27476 414 aaKnown RBP RIP-Chip data6.63□□□□□ -1.35not detected
RPC40YPR110C YAP5P40574 245 aa6.62□□□□□ -1.35
RPC40YPR110C VNX1P42839 908 aa6.61□□□□□ -1.35
RPC40YPR110C WSC3Q12215 556 aa6.61□□□□□ -1.35
RPC40YPR110C ARP8Q12386 881 aaKnown RBP RIP-Chip data6.6□□□□□ -1.35not detected
RPC40YPR110C DMA1P38823 416 aa6.58□□□□□ -1.36
RPC40YPR110C PSD2P53037 1138 aaKnown RBP6.57□□□□□ -1.36
RPC40YPR110C PIB1Q06651 286 aa6.57□□□□□ -1.36
RPC40YPR110C SPP1Q03012 353 aa6.55□□□□□ -1.36
RPC40YPR110C MRM1P25270 412 aa6.53□□□□□ -1.36
RPC40YPR110C GTT3P39996 337 aa6.48□□□□□ -1.37
RPC40YPR110C MGA2P40578 1113 aa6.48□□□□□ -1.37
RPC40YPR110C TIF11P38912 153 aaKnown RBP6.46□□□□□ -1.38
RPC40YPR110C CST9Q06032 482 aa6.45□□□□□ -1.38
RPC40YPR110C AIR2Q12476 344 aaKnown RBP6.44□□□□□ -1.38
RPC40YPR110C FKH1P40466 484 aa6.42□□□□□ -1.38
RPC40YPR110C LDB19Q12502 818 aa6.39□□□□□ -1.39
RPC40YPR110C VPS29P38759 282 aa6.38□□□□□ -1.39
RPC40YPR110C YFR006WP43590 535 aa6.38□□□□□ -1.39
RPC40YPR110C ULI1P43604 169 aa6.38□□□□□ -1.39
RPC40YPR110C IOC2Q12072 812 aa6.37□□□□□ -1.39
RPC40YPR110C DBP1P24784 617 aaKnown RBP6.34□□□□□ -1.39
RPC40YPR110C RCR1P38212 213 aa6.34□□□□□ -1.39
RPC40YPR110C STS1P38637 319 aa6.34□□□□□ -1.39
RPC40YPR110C SET4P42948 560 aa6.33□□□□□ -1.4
RPC40YPR110C YMR1P47147 688 aaKnown RBP RIP-Chip data6.32□□□□□ -1.4not detected
RPC40YPR110C YOL036WQ08206 761 aa6.32□□□□□ -1.4
RPC40YPR110C YJL171CP46992 396 aa6.31□□□□□ -1.4
RPC40YPR110C RTG3P38165 486 aa6.3□□□□□ -1.4
RPC40YPR110C TRP5P00931 707 aaKnown RBP6.28□□□□□ -1.4
RPC40YPR110C VMA1P17255 1071 aaKnown RBP6.27□□□□□ -1.41
RPC40YPR110C SAS10Q12136 610 aaPredicted RBP6.27□□□□□ -1.41
RPC40YPR110C MSB4Q12317 492 aa6.27□□□□□ -1.41
RPC40YPR110C RTG1P32607 177 aa6.25□□□□□ -1.41
RPC40YPR110C BMT6Q12291 365 aa6.25□□□□□ -1.41
RPC40YPR110C EAP1P36041 632 aaKnown RBP6.23□□□□□ -1.41
RPC40YPR110C RAM2P29703 316 aa6.21□□□□□ -1.42
RPC40YPR110C SAM3Q08986 587 aa6.21□□□□□ -1.42
RPC40YPR110C YNL035CP53962 389 aaKnown RBP6.17□□□□□ -1.42
RPC40YPR110C NCR1Q12200 1170 aa6.17□□□□□ -1.42
RPC40YPR110C LEO1P38439 464 aa6.14□□□□□ -1.43
RPC40YPR110C GYP5Q12344 894 aa6.13□□□□□ -1.43
RPC40YPR110C SEC61P32915 480 aa6.12□□□□□ -1.43
RPC40YPR110C DCW1P36091 449 aa6.12□□□□□ -1.43
RPC40YPR110C DAN4P47179 1161 aa6.12□□□□□ -1.43
RPC40YPR110C LEU3P08638 886 aa6.11□□□□□ -1.43
RPC40YPR110C MAK11P20484 414 aaKnown RBP6.11□□□□□ -1.43
Retrieved 100 of 5,963 RNA–protein pairs in 12.4 ms