RNA–Protein interactions for RNA: YFL009W

CDC4, Transcript of F-box protein required for both the G1/S and G2/M phase transitions, yeast

Gene CDC4, Length 2,340 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CDC4	YFL009W	MDM36	Q06820	579 aa		5.1	□□□□□ -1.59
CDC4	YFL009W	FMP25	Q08023	583 aa		5.1	□□□□□ -1.59
CDC4	YFL009W	SNX3	Q08826	162 aa	Known RBP	5.1	□□□□□ -1.59
CDC4	YFL009W	YOR289W	Q12012	251 aa	Predicted RBP	5.1	□□□□□ -1.59
CDC4	YFL009W	CBF1	P17106	351 aa		5.09	□□□□□ -1.59
CDC4	YFL009W	SPO16	P17122	198 aa		5.09	□□□□□ -1.59
CDC4	YFL009W	RPB4	P20433	221 aa	Predicted RBP	5.09	□□□□□ -1.59
CDC4	YFL009W	DBP5	P20449	482 aa	Known RBP	5.09	□□□□□ -1.59
CDC4	YFL009W	BLI1	P35727	113 aa		5.09	□□□□□ -1.59
CDC4	YFL009W	RPH1	P39956	796 aa		5.09	□□□□□ -1.59
CDC4	YFL009W	FTR1	P40088	404 aa		5.09	□□□□□ -1.59
CDC4	YFL009W	DPH1	P40487	425 aa	Known RBP	5.09	□□□□□ -1.59
CDC4	YFL009W	SLS1	P42900	643 aa		5.09	□□□□□ -1.59
CDC4	YFL009W	YGR153W	P48238	217 aa		5.09	□□□□□ -1.59
CDC4	YFL009W	RNR4	P49723	345 aa	Known RBP	5.09	□□□□□ -1.59
CDC4	YFL009W	IMD3	P50095	523 aa	Known RBP	5.09	□□□□□ -1.59
CDC4	YFL009W	ATP22	P50273	684 aa	Predicted RBP	5.09	□□□□□ -1.59
CDC4	YFL009W	DIP5	P53388	608 aa		5.09	□□□□□ -1.59
CDC4	YFL009W	DCP2	P53550	970 aa	Known RBP	5.09	□□□□□ -1.59
CDC4	YFL009W	ABZ2	Q03266	374 aa		5.09	□□□□□ -1.59
CDC4	YFL009W	COA4	Q05809	96 aa		5.09	□□□□□ -1.59
CDC4	YFL009W	RSC2	Q06488	889 aa		5.09	□□□□□ -1.59
CDC4	YFL009W	RKM4	Q12504	494 aa		5.09	□□□□□ -1.59
CDC4	YFL009W	ARP6	Q12509	438 aa		5.09	□□□□□ -1.59
CDC4	YFL009W	RPS3	P05750	240 aa	Known RBP	5.09	□□□□□ -1.59
CDC4	YFL009W	HSP60	P19882	572 aa	Known RBP	5.09	□□□□□ -1.59
CDC4	YFL009W	PEX1	P24004	1043 aa		5.09	□□□□□ -1.59
CDC4	YFL009W	TRM2	P33753	639 aa		5.09	□□□□□ -1.59
CDC4	YFL009W	MOT2	P34909	587 aa	Known RBP	5.09	□□□□□ -1.59
CDC4	YFL009W	MYO3	P36006	1272 aa		5.09	□□□□□ -1.59
CDC4	YFL009W	ETR1	P38071	380 aa		5.09	□□□□□ -1.59
CDC4	YFL009W	ATP3	P38077	311 aa	Known RBP	5.09	□□□□□ -1.59
CDC4	YFL009W	SLM4	P38247	162 aa		5.09	□□□□□ -1.59
CDC4	YFL009W	YBR225W	P38321	900 aa		5.09	□□□□□ -1.59
CDC4	YFL009W	UBP5	P39944	805 aa		5.09	□□□□□ -1.59
CDC4	YFL009W	TY4A-J	P47023	414 aa		5.09	□□□□□ -1.59
CDC4	YFL009W	CWC25	P53854	179 aa	Known RBP	5.09	□□□□□ -1.59
CDC4	YFL009W	ORC3	P54790	616 aa		5.09	□□□□□ -1.59
CDC4	YFL009W	RRN11	Q04712	507 aa		5.09	□□□□□ -1.59
CDC4	YFL009W	BAG7	Q12128	409 aa		5.09	□□□□□ -1.59
CDC4	YFL009W	ACF2	Q12168	779 aa		5.09	□□□□□ -1.59
CDC4	YFL009W	HMG2	P12684	1045 aa		5.08	□□□□□ -1.6
CDC4	YFL009W	KIN2	P13186	1147 aa	Known RBP	5.08	□□□□□ -1.6
CDC4	YFL009W	MSS116	P15424	664 aa	Known RBP	5.08	□□□□□ -1.6
CDC4	YFL009W	PRP6	P19735	899 aa	Predicted RBP	5.08	□□□□□ -1.6
CDC4	YFL009W	NTR2	P36118	322 aa	Predicted RBP	5.08	□□□□□ -1.6
CDC4	YFL009W	VHC1	P38329	1120 aa		5.08	□□□□□ -1.6
CDC4	YFL009W	TRM5	P38793	499 aa		5.08	□□□□□ -1.6
CDC4	YFL009W	AVT6	P40074	448 aa		5.08	□□□□□ -1.6
CDC4	YFL009W	BRE2	P43132	505 aa		5.08	□□□□□ -1.6
CDC4	YFL009W	MTG1	Q03151	367 aa	Predicted RBP	5.08	□□□□□ -1.6
CDC4	YFL009W	YMR018W	Q04364	514 aa		5.08	□□□□□ -1.6
CDC4	YFL009W	VPS36	Q06696	566 aa		5.08	□□□□□ -1.6
CDC4	YFL009W	ATG11	Q12527	1178 aa		5.08	□□□□□ -1.6
CDC4	YFL009W	CAN1	P04817	590 aa		5.08	□□□□□ -1.6
CDC4	YFL009W	RED1	P14291	827 aa		5.08	□□□□□ -1.6
CDC4	YFL009W	HEM15	P16622	393 aa		5.08	□□□□□ -1.6
CDC4	YFL009W	KGD2	P19262	463 aa	Predicted RBP	5.08	□□□□□ -1.6
CDC4	YFL009W	ISY1	P21374	235 aa	Predicted RBP	5.08	□□□□□ -1.6
CDC4	YFL009W	NPP1	P25353	742 aa		5.08	□□□□□ -1.6
CDC4	YFL009W	ZIP1	P31111	875 aa		5.08	□□□□□ -1.6
CDC4	YFL009W	TFC4	P33339	1025 aa		5.08	□□□□□ -1.6
CDC4	YFL009W	CLG1	P35190	452 aa		5.08	□□□□□ -1.6
CDC4	YFL009W	RRT2	P38332	387 aa		5.08	□□□□□ -1.6
CDC4	YFL009W	TSC10	P38342	320 aa		5.08	□□□□□ -1.6
CDC4	YFL009W	RPT2	P40327	437 aa	Known RBP	5.08	□□□□□ -1.6
CDC4	YFL009W	GCD10	P41814	478 aa		5.08	□□□□□ -1.6
CDC4	YFL009W	IML2	P47031	731 aa		5.08	□□□□□ -1.6
CDC4	YFL009W	EMC2	P47133	292 aa	Known RBP	5.08	□□□□□ -1.6
CDC4	YFL009W	LYS5	P50113	272 aa		5.08	□□□□□ -1.6
CDC4	YFL009W	RTA1	P53047	317 aa		5.08	□□□□□ -1.6
CDC4	YFL009W	LIF1	P53150	421 aa		5.08	□□□□□ -1.6
CDC4	YFL009W	FYV6	P53913	173 aa		5.08	□□□□□ -1.6
CDC4	YFL009W	PNG1	Q02890	363 aa		5.08	□□□□□ -1.6
CDC4	YFL009W	CEF1	Q03654	590 aa	Predicted RBP	5.08	□□□□□ -1.6
CDC4	YFL009W	SYT1	Q06836	1226 aa		5.08	□□□□□ -1.6
CDC4	YFL009W	ADY3	Q07732	790 aa		5.08	□□□□□ -1.6
CDC4	YFL009W	RCN2	Q12044	265 aa		5.08	□□□□□ -1.6
CDC4	YFL009W	VPS54	Q12071	889 aa		5.08	□□□□□ -1.6
CDC4	YFL009W	NSI1	Q12457	570 aa		5.08	□□□□□ -1.6
CDC4	YFL009W	YDR461C-A	Q2V2P7	80 aa		5.08	□□□□□ -1.6
CDC4	YFL009W	URE2	P23202	354 aa	Known RBP	5.07	□□□□□ -1.6
CDC4	YFL009W	ICL1	P28240	557 aa	Predicted RBP	5.07	□□□□□ -1.6
CDC4	YFL009W	SBA1	P28707	216 aa	Known RBP	5.07	□□□□□ -1.6
CDC4	YFL009W	ACH1	P32316	526 aa		5.07	□□□□□ -1.6
CDC4	YFL009W	PRP19	P32523	503 aa	Known RBP	5.07	□□□□□ -1.6
CDC4	YFL009W	MSG5	P38590	489 aa		5.07	□□□□□ -1.6
CDC4	YFL009W	HIS2	P38635	335 aa		5.07	□□□□□ -1.6
CDC4	YFL009W	DIA4	P38705	446 aa	Predicted RBP	5.07	□□□□□ -1.6
CDC4	YFL009W	UTP9	P38882	575 aa	Known RBP	5.07	□□□□□ -1.6
CDC4	YFL009W	END3	P39013	349 aa		5.07	□□□□□ -1.6
CDC4	YFL009W	SAH1	P39954	449 aa	Known RBP	5.07	□□□□□ -1.6
CDC4	YFL009W	PFK26	P40433	827 aa	Known RBP	5.07	□□□□□ -1.6
CDC4	YFL009W	ASE1	P50275	885 aa		5.07	□□□□□ -1.6
CDC4	YFL009W	SCW11	P53189	542 aa		5.07	□□□□□ -1.6
CDC4	YFL009W	DAK1	P54838	584 aa	Known RBP	5.07	□□□□□ -1.6
CDC4	YFL009W	YDR476C	Q03362	224 aa		5.07	□□□□□ -1.6
CDC4	YFL009W	SMP3	Q04174	516 aa		5.07	□□□□□ -1.6
CDC4	YFL009W	SMD2	Q06217	110 aa	Known RBP	5.07	□□□□□ -1.6
CDC4	YFL009W	PUS7	Q08647	676 aa	Known RBP	5.07	□□□□□ -1.6

Retrieved 100 of 5,963 RNA–protein pairs in 102.3 ms