RNA–Protein interactions for RNA: ENSMUST00000005705.7

Trim28-201, Transcript of Transcription intermediary factor 1-beta, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Trim28, Length 3,245 nt, Biotype protein coding, Subcellular localisation Exosome .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28-201ENSMUST00000005705 Gm9767G3X930 207 aa11.34□□□□□ -0.59
Trim28-201ENSMUST00000005705 Klk11Q9QYN3 276 aa11.34□□□□□ -0.59
Trim28-201ENSMUST00000005705 Gm10577Q3UDV9 132 aa11.34□□□□□ -0.59
Trim28-201ENSMUST00000005705 4930546C10RikE9Q4Y3 121 aa11.33□□□□□ -0.6
Trim28-201ENSMUST00000005705 MplkipQ9D011 178 aa11.31□□□□□ -0.6
Trim28-201ENSMUST00000005705 Rpl28P41105 137 aaKnown RBP11.31□□□□□ -0.6
Trim28-201ENSMUST00000005705 Gm7138L7N2C3 230 aa11.31□□□□□ -0.6
Trim28-201ENSMUST00000005705 Gm3238W4VSP7 230 aa11.31□□□□□ -0.6
Trim28-201ENSMUST00000005705 CrygaP04345 174 aa11.3□□□□□ -0.6
Trim28-201ENSMUST00000005705 PrcdQ00LT2 53 aa11.3□□□□□ -0.6
Trim28-201ENSMUST00000005705 Cystm1Q8K353 104 aa11.3□□□□□ -0.6
Trim28-201ENSMUST00000005705 E130218I03RikA0A0U1RNU5 63 aa11.3□□□□□ -0.6
Trim28-201ENSMUST00000005705 Igkv4-54A0A0G2JES9 117 aa11.29□□□□□ -0.6
Trim28-201ENSMUST00000005705 Rpl18aP62717 176 aaKnown RBP11.29□□□□□ -0.6
Trim28-201ENSMUST00000005705 Gm10549Q3URY4 149 aa11.29□□□□□ -0.6
Trim28-201ENSMUST00000005705 Rnf152Q8BG47 203 aa11.29□□□□□ -0.6
Trim28-201ENSMUST00000005705 Srrm2Q8BTI8 2703 aaKnown RBP11.29□□□□□ -0.6
Trim28-201ENSMUST00000005705 Cd99Q8VCN6 175 aa11.29□□□□□ -0.6
Trim28-201ENSMUST00000005705 Rpl39lQ9CQD0 51 aa11.29□□□□□ -0.6
Trim28-201ENSMUST00000005705 Gm7137J3QMW1 236 aa11.28□□□□□ -0.6
Trim28-201ENSMUST00000005705 Defb50Q6TU36 73 aa11.27□□□□□ -0.61
Trim28-201ENSMUST00000005705 Tm2d2Q8R0I4 213 aa11.27□□□□□ -0.61
Trim28-201ENSMUST00000005705 Defa27F2Z403 93 aa11.27□□□□□ -0.61
Trim28-201ENSMUST00000005705 Gm10772F7AIG4 85 aa11.27□□□□□ -0.61
Trim28-201ENSMUST00000005705 VwfQ8CIZ8 2813 aa11.27□□□□□ -0.61
Trim28-201ENSMUST00000005705 Tmem258P61166 79 aa11.26□□□□□ -0.61
Trim28-201ENSMUST00000005705 Serp2Q6TAW2 65 aa11.26□□□□□ -0.61
Trim28-201ENSMUST00000005705 Higd2aQ9CQJ1 106 aa11.26□□□□□ -0.61
Trim28-201ENSMUST00000005705 Pkd1l1Q8R526 2615 aa11.25□□□□□ -0.61
Trim28-201ENSMUST00000005705 Gm5142Q8C5X9 133 aa11.25□□□□□ -0.61
Trim28-201ENSMUST00000005705 Igkv8-16A0A0G2JDG9 121 aa11.25□□□□□ -0.61
Trim28-201ENSMUST00000005705 Rps28P62858 69 aaKnown RBP11.25□□□□□ -0.61
Trim28-201ENSMUST00000005705 Zfand2aQ9JII7 171 aa11.25□□□□□ -0.61
Trim28-201ENSMUST00000005705 Ighv13-2A0A0A6YWN3 119 aa11.24□□□□□ -0.61
Trim28-201ENSMUST00000005705 4930519P11RikQ9CUJ8 166 aa11.24□□□□□ -0.61
Trim28-201ENSMUST00000005705 SnurfQ9WU12 71 aa11.24□□□□□ -0.61
Trim28-201ENSMUST00000005705 A830031A19RikQ8BNT5 113 aa11.24□□□□□ -0.61
Trim28-201ENSMUST00000005705 GhrhP16043 103 aa11.24□□□□□ -0.61
Trim28-201ENSMUST00000005705 Igkv4-53A0A0G2JFC6 119 aa11.23□□□□□ -0.61
Trim28-201ENSMUST00000005705 MobpQ9D2P8 170 aa11.22□□□□□ -0.61
Trim28-201ENSMUST00000005705 Krtap16-1A2A5X5 502 aa11.22□□□□□ -0.61
Trim28-201ENSMUST00000005705 Vpreb1P13372 142 aa11.22□□□□□ -0.61
Trim28-201ENSMUST00000005705 Gpha2Q925Q5 128 aa11.22□□□□□ -0.61
Trim28-201ENSMUST00000005705 9430015G10RikA2ASP7 199 aa11.21□□□□□ -0.61
Trim28-201ENSMUST00000005705 1810062G17RikG3X8Y2 129 aa11.21□□□□□ -0.61
Trim28-201ENSMUST00000005705 Acyp1P56376 99 aa11.21□□□□□ -0.61
Trim28-201ENSMUST00000005705 Igkv4-58A0A0G2JGI6 119 aa11.21□□□□□ -0.62
Trim28-201ENSMUST00000005705 Igkv8-24A0A140T8P5 121 aa11.21□□□□□ -0.62
Trim28-201ENSMUST00000005705 Gm28374F6SG70 93 aa11.21□□□□□ -0.62
Trim28-201ENSMUST00000005705 Fam19a1Q7TPG8 133 aa11.2□□□□□ -0.62
Trim28-201ENSMUST00000005705 Gm10518F6UQQ9 182 aa11.2□□□□□ -0.62
Trim28-201ENSMUST00000005705 Ifitm6A0A1B0GS75 124 aa11.19□□□□□ -0.62
Trim28-201ENSMUST00000005705 EnhoQ8K1D8 76 aa11.19□□□□□ -0.62
Trim28-201ENSMUST00000005705 Gm19935A0A1B0GSF9 52 aa11.19□□□□□ -0.62
Trim28-201ENSMUST00000005705 Krtap24-1G3X9A2 248 aa11.19□□□□□ -0.62
Trim28-201ENSMUST00000005705 Trav9n-4A0A075B631 113 aa11.18□□□□□ -0.62
Trim28-201ENSMUST00000005705 BikO70337 150 aa11.18□□□□□ -0.62
Trim28-201ENSMUST00000005705 Lyrm9Q3UN90 78 aa11.18□□□□□ -0.62
Trim28-201ENSMUST00000005705 Tmem223Q9CQE2 199 aaKnown RBP11.17□□□□□ -0.62
Trim28-201ENSMUST00000005705 Reg3dQ9QUS9 175 aa11.16□□□□□ -0.62
Trim28-201ENSMUST00000005705 Ighv2-9-1A0A075B697 116 aa11.16□□□□□ -0.62
Trim28-201ENSMUST00000005705 D730001G18RikA0A087WQU7 115 aa11.16□□□□□ -0.62
Trim28-201ENSMUST00000005705 CrygeQ03740 174 aa11.16□□□□□ -0.62
Trim28-201ENSMUST00000005705 Gm10845Q3UNY9 185 aa11.15□□□□□ -0.62
Trim28-201ENSMUST00000005705 Gm10337F7DEP7 55 aa11.14□□□□□ -0.63
Trim28-201ENSMUST00000005705 Igkv1-88A0A140T8N1 120 aa11.14□□□□□ -0.63
Trim28-201ENSMUST00000005705 Erdr1J3QMM0 206 aa11.14□□□□□ -0.63
Trim28-201ENSMUST00000005705 Znf414Q9DCK4 299 aa11.14□□□□□ -0.63
Trim28-201ENSMUST00000005705 Trbv13-2A0A140T8N6 113 aa11.14□□□□□ -0.63
Trim28-201ENSMUST00000005705 Tmem254aP0DN89 123 aa11.14□□□□□ -0.63
Trim28-201ENSMUST00000005705 Tmem254bP0DN90 123 aa11.14□□□□□ -0.63
Trim28-201ENSMUST00000005705 Tmem254cP0DN91 123 aa11.14□□□□□ -0.63
Trim28-201ENSMUST00000005705 Dad1P61804 113 aa11.14□□□□□ -0.63
Trim28-201ENSMUST00000005705 Fam229bQ8CF36 80 aa11.14□□□□□ -0.63
Trim28-201ENSMUST00000005705 Ighv1-56A0A0A6YXG2 117 aa11.13□□□□□ -0.63
Trim28-201ENSMUST00000005705 Igkv8-18A0A0B4J1J3 123 aa11.13□□□□□ -0.63
Trim28-201ENSMUST00000005705 Igkv4-72A0A0B4J1I4 117 aa11.12□□□□□ -0.63
Trim28-201ENSMUST00000005705 Q9DAA7 145 aa11.12□□□□□ -0.63
Trim28-201ENSMUST00000005705 H2al1aQ5M8Q2 105 aa11.12□□□□□ -0.63
Trim28-201ENSMUST00000005705 Defa28D3Z1V9 94 aa11.11□□□□□ -0.63
Trim28-201ENSMUST00000005705 9530053A07RikE9PVG8 2581 aa11.11□□□□□ -0.63
Trim28-201ENSMUST00000005705 Gm10320E9PW43 113 aa11.1□□□□□ -0.63
Trim28-201ENSMUST00000005705 Defb37Q7TMD2 62 aa11.1□□□□□ -0.63
Trim28-201ENSMUST00000005705 Chchd7Q8K2Q5 85 aa11.1□□□□□ -0.63
Trim28-201ENSMUST00000005705 Lamtor3O88653 124 aa11.1□□□□□ -0.63
Trim28-201ENSMUST00000005705 Igkv3-1A0A075B5P1 119 aa11.08□□□□□ -0.64
Trim28-201ENSMUST00000005705 Rbm3O89086 153 aaKnown RBP11.08□□□□□ -0.64
Trim28-201ENSMUST00000005705 Gm5153P01627 120 aa11.08□□□□□ -0.64
Trim28-201ENSMUST00000005705 C530025M09RikF6RGA8 229 aa11.07□□□□□ -0.64
Trim28-201ENSMUST00000005705 CrygfQ9CXV3 174 aa11.07□□□□□ -0.64
Trim28-201ENSMUST00000005705 Igsf10Q3V1M1 2594 aa11.07□□□□□ -0.64
Trim28-201ENSMUST00000005705 E130208F15RikQ3UPV3 143 aa11.07□□□□□ -0.64
Trim28-201ENSMUST00000005705 Igkv3-9A0A140T8P4 119 aa11.06□□□□□ -0.64
Trim28-201ENSMUST00000005705 Odf3l2Q3TZ65 277 aa11.06□□□□□ -0.64
Trim28-201ENSMUST00000005705 Ubl5Q9EPV8 73 aa11.06□□□□□ -0.64
Trim28-201ENSMUST00000005705 Ormdl1Q921I0 153 aa11.06□□□□□ -0.64
Trim28-201ENSMUST00000005705 Igkv8-21A0A140T8P7 120 aa11.05□□□□□ -0.64
Trim28-201ENSMUST00000005705 Krtap11-1E9Q2E9 183 aa11.05□□□□□ -0.64
Trim28-201ENSMUST00000005705 Ube2d4D3YUH6 135 aa11.05□□□□□ -0.64
Trim28-201ENSMUST00000005705 Igkv8-27A0A0G2JF28 120 aa11.04□□□□□ -0.64
Retrieved 100 of 22,080 RNA–protein pairs in 165.8 ms