Protein–RNA interactions for Protein: Q9CQD0

Rpl39l, RIKEN cDNA 4930517K11, mousemouse

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rpl39lQ9CQD0 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
Rpl39lQ9CQD0 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
Rpl39lQ9CQD0 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Rpl39lQ9CQD0 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Rpl39lQ9CQD0 Psd-208ENSMUST00000224556 2034 ntBASIC21.03■□□□□ 0.96
Rpl39lQ9CQD0 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Rpl39lQ9CQD0 Gm25239-201ENSMUST00000174915 86 ntBASIC20.58■□□□□ 0.89
Rpl39lQ9CQD0 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Rpl39lQ9CQD0 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Rpl39lQ9CQD0 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Rpl39lQ9CQD0 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Rpl39lQ9CQD0 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Rpl39lQ9CQD0 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
Rpl39lQ9CQD0 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Rpl39lQ9CQD0 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Rpl39lQ9CQD0 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Rpl39lQ9CQD0 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
Rpl39lQ9CQD0 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Rpl39lQ9CQD0 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC19.37■□□□□ 0.69
Rpl39lQ9CQD0 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC19.34■□□□□ 0.69
Rpl39lQ9CQD0 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Rpl39lQ9CQD0 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Rpl39lQ9CQD0 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
Rpl39lQ9CQD0 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Rpl39lQ9CQD0 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Rpl39lQ9CQD0 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Rpl39lQ9CQD0 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Rpl39lQ9CQD0 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
Rpl39lQ9CQD0 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC19.06■□□□□ 0.64
Rpl39lQ9CQD0 Gm42596-201ENSMUST00000196305 1958 ntBASIC19.03■□□□□ 0.64
Rpl39lQ9CQD0 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
Rpl39lQ9CQD0 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC19.03■□□□□ 0.64
Rpl39lQ9CQD0 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Rpl39lQ9CQD0 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Rpl39lQ9CQD0 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Rpl39lQ9CQD0 Gm15042-201ENSMUST00000120212 883 ntBASIC18.85■□□□□ 0.61
Rpl39lQ9CQD0 Gm10524-201ENSMUST00000181931 1893 ntBASIC18.8■□□□□ 0.6
Rpl39lQ9CQD0 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Rpl39lQ9CQD0 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Rpl39lQ9CQD0 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Rpl39lQ9CQD0 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Rpl39lQ9CQD0 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC18.72■□□□□ 0.59
Rpl39lQ9CQD0 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Rpl39lQ9CQD0 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
Rpl39lQ9CQD0 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Rpl39lQ9CQD0 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
Rpl39lQ9CQD0 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC18.64■□□□□ 0.57
Rpl39lQ9CQD0 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Rpl39lQ9CQD0 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC18.57■□□□□ 0.56
Rpl39lQ9CQD0 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Rpl39lQ9CQD0 Gm15045-201ENSMUST00000117359 883 ntBASIC18.54■□□□□ 0.56
Rpl39lQ9CQD0 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Rpl39lQ9CQD0 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Rpl39lQ9CQD0 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
Rpl39lQ9CQD0 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Rpl39lQ9CQD0 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Rpl39lQ9CQD0 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC18.41■□□□□ 0.54
Rpl39lQ9CQD0 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
Rpl39lQ9CQD0 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Rpl39lQ9CQD0 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
Rpl39lQ9CQD0 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
Rpl39lQ9CQD0 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Rpl39lQ9CQD0 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
Rpl39lQ9CQD0 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Rpl39lQ9CQD0 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Rpl39lQ9CQD0 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Rpl39lQ9CQD0 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Rpl39lQ9CQD0 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Rpl39lQ9CQD0 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Rpl39lQ9CQD0 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Rpl39lQ9CQD0 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Rpl39lQ9CQD0 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Rpl39lQ9CQD0 CT025624.2-201ENSMUST00000223609 1909 ntBASIC18.08■□□□□ 0.49
Rpl39lQ9CQD0 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
Rpl39lQ9CQD0 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Rpl39lQ9CQD0 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Rpl39lQ9CQD0 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Rpl39lQ9CQD0 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
Rpl39lQ9CQD0 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC18.02■□□□□ 0.48
Rpl39lQ9CQD0 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Rpl39lQ9CQD0 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
Rpl39lQ9CQD0 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Rpl39lQ9CQD0 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC17.92■□□□□ 0.46
Rpl39lQ9CQD0 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Rpl39lQ9CQD0 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Rpl39lQ9CQD0 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Rpl39lQ9CQD0 Zswim6-201ENSMUST00000105097 5456 ntTSL 5 BASIC17.87■□□□□ 0.45
Rpl39lQ9CQD0 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
Rpl39lQ9CQD0 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
Rpl39lQ9CQD0 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC17.84■□□□□ 0.45
Rpl39lQ9CQD0 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
Rpl39lQ9CQD0 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Rpl39lQ9CQD0 Ctbp1-206ENSMUST00000201575 2091 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Rpl39lQ9CQD0 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Rpl39lQ9CQD0 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Rpl39lQ9CQD0 Cadm4-201ENSMUST00000068023 2161 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Rpl39lQ9CQD0 Orai1-202ENSMUST00000121652 1875 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Rpl39lQ9CQD0 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Rpl39lQ9CQD0 Cnnm3-202ENSMUST00000097776 5292 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Rpl39lQ9CQD0 Dlg1-203ENSMUST00000100001 4711 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 15.5 ms